Miyakogusa Predicted Gene

Lj2g3v1984660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984660.1 Non Chatacterized Hit- tr|D8SFY0|D8SFY0_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.09,4e-18,seg,NULL,CUFF.38220.1
         (661 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   117   2e-26
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   109   7e-24
AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    72   2e-12

>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 6/173 (3%)

Query: 385 ATGLVFPNVHPSWLGKFMIHKSEGIARNCDGFQAHLSSCASR---EVPDKXXXXXXXXXX 441
           +T    P     W G   + KS  ++    G QA+LS+ AS    EV  +          
Sbjct: 689 STTSAIPKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFPEKVTLNEV 748

Query: 442 XXXXXWPSQFIRSQVTEENISLYFFPKDVDSDGTDYRGLINCMINNDLALKGNLDGAELL 501
                WP+QF  +   E++++L+FF KD++S   +Y+ L++ MI  DLALKGNL+G ELL
Sbjct: 749 PRLSSWPAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKGNLEGVELL 808

Query: 502 IFPSNILPKRSQLWNQNMFLWGVFNAQ---VVNNSANTPVSNSVKQGNGDTVK 551
           IF SN LP+  Q WN   FLWGVF  +     N   NTP+  S    N DT +
Sbjct: 809 IFASNQLPQDCQRWNMLFFLWGVFRGKKESCSNPPKNTPLPASCVSPNRDTFR 861


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 397 WLGKFMIHKSEGIARNCDGFQAHLSSCAS---REVPDKXXXXXXXXXXXXXXXWPSQFIR 453
           W G   + K    +    G QAHLS+ AS    EV +K               WP+QF +
Sbjct: 838 WQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAEVVNKFPETFSLNEVPRKSTWPTQFEK 897

Query: 454 SQVTEENISLYFFPKDVDSDGTDYRGLINCMINNDLALKGNLDGAELLIFPSNILPKRSQ 513
               E +I+L+FF KD +S   +Y+ L++ MI NDLALKGNLD  +LLIF SN LP   Q
Sbjct: 898 LGTKEAHIALFFFAKDTESYERNYKPLVDNMIKNDLALKGNLDNVDLLIFASNQLPSNCQ 957

Query: 514 LWNQNMFLWGVFNAQV-VNNSANT--PVSN 540
            WN   FLWGVF  +   N   NT  P SN
Sbjct: 958 RWNMLYFLWGVFQGRKETNPQKNTSLPTSN 987


>AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16550257 FORWARD LENGTH=431
          Length = 431

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 395 PSWLGKFMIHKSEGIARNCDGFQAHLSSCASREVPDKXXXXXXXXXXX---XXXXWPSQF 451
           P W G  ++    G +   DG  AH+SS A  +V +                   WP  F
Sbjct: 291 PIWRG--LMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTF 348

Query: 452 IRSQ-VTEENISLYFFPKDVDSDGTDYRGLINCMINNDLALKGNLDGAELLIFPSNILPK 510
           +++    +E+++L+FFP    +D   +  L++ M  ND A++  L+ AELL+F S +LPK
Sbjct: 349 LKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPK 408

Query: 511 RSQLWNQNMFLWGVF 525
            S  +N   +LWGVF
Sbjct: 409 DSWTFNSKYYLWGVF 423