Miyakogusa Predicted Gene
- Lj2g3v1984660.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1984660.1 Non Chatacterized Hit- tr|D8SFY0|D8SFY0_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.09,4e-18,seg,NULL,CUFF.38220.1
(1986 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75931 similar to UniRef100_A7PB64 Cluster: Chromosome... 371 e-101
gnl|LJGI|TC77914 283 2e-75
gnl|LJGI|TC63383 homologue to UniRef100_Q7CTN6 Cluster: Transcri... 276 5e-73
gnl|LJGI|BW596591 similar to UniRef100_Q40458 Cluster: 23 kDa po... 210 2e-53
gnl|LJGI|BP058055 194 1e-48
>gnl|LJGI|TC75931 similar to UniRef100_A7PB64 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 998
Score = 371 bits (187), Expect = e-101
Identities = 247/267 (92%)
Strand = Plus / Plus
Query: 1426 gactatagaggattgataaattgcatgatcaataatgatttagctctgaaaggaaatttg 1485
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 102 gactatagaggattgatgaattacatgatcaataatgatttagctctgaaaggaaatttg 161
Query: 1486 gatggggctgagcttttaatttttccatccaacattctgcctaagagatcccagctttgg 1545
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 162 gatggggttgagcttttaatttttccatccaacattctgcctgagagatcccagctttgg 221
Query: 1546 aaccagaatatgttcctctggggagtattcaatgcacaagtggtgaataactcagcaaac 1605
||||||| |||||||||||||| |||||||| | ||| |||||||||||||||||||
Sbjct: 222 aaccagatgatgttcctctggggcgtattcaaagtgcaaaaggtgaataactcagcaaac 281
Query: 1606 acaccagtctcaaattctgttaagcaaggaaatggagatactgtgaaaaggagggaattt 1665
|||||||| ||||||||| | |||||||||||||||||||||||||||||| ||| | ||
Sbjct: 282 acaccagtgtcaaattctctgaagcaaggaaatggagatactgtgaaaaggggggcaatt 341
Query: 1666 gatctcaatgcttatcctgaagatgaa 1692
||||||||||| ||| |||||||||||
Sbjct: 342 gatctcaatgcatatactgaagatgaa 368
Score = 285 bits (144), Expect = 5e-76
Identities = 234/263 (88%), Gaps = 2/263 (0%)
Strand = Plus / Plus
Query: 1724 agcaaggaaatggagatactgtgaaaaaggggacaattgatctcagtgcatgtactgaag 1783
||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||
Sbjct: 304 agcaaggaaatggagatactgtgaaaaggggggcaattgatctcaatgcatatactgaag 363
Query: 1784 atgaaaatgttgacgcaggtgttaatcttgcagttgagggtagaagcacaacaccagaaa 1843
|||||||||||| | || | ||||||||||||| ||||||||||||||||||||||||
Sbjct: 364 atgaaaatgttggcacaaatcttaatcttgcagtgcagggtagaagcacaacaccagaaa 423
Query: 1844 atggttctgttaggactgagcaccatgttaaggagctaccaacatcactttctcctgcaa 1903
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 424 atggttctgttaggattgagcaccatgttaaggagctaccaacatcactctctccagcac 483
Query: 1904 tgctttcaactgtggaaaatatggacccgcgtgataggcacgccacagaatctttgattc 1963
|| |||||| ||||||||||||||||||||||| || |||| | ||| ||||| |||
Sbjct: 484 cgcgttcaac--tggaaaatatggacccgcgtgattgggacgctgcggaagctttggttc 541
Query: 1964 ttctctctaggggcagtttttga 1986
|||||||||| || || ||||||
Sbjct: 542 ttctctctagtgggaggttttga 564
>gnl|LJGI|TC77914
Length = 746
Score = 283 bits (143), Expect = 2e-75
Identities = 272/315 (86%)
Strand = Plus / Plus
Query: 341 gctctctttctgcaggctctctgttgaagtcaaattcttcaaaagctgcgaatttgaaac 400
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 404 gctctctttctgcaggctctctattgaagtcaaattcttccaaagctgcgaatttgaaac 463
Query: 401 ctaaaggacagaatgccaaggccggatgtttgcaaaagcagaaggtagagagaaatccag 460
||||||||||| || ||||| ||| ||||||||||||||||||| |||||| |||
Sbjct: 464 ctaaaggacagctagcaaaggctggacgtttgcaaaagcagaaggttgagagaggtccga 523
Query: 461 cttttcatgatgatagaaagggaaaaggccctatagcggtatctaaatctatgacatctg 520
|||||||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||
Sbjct: 524 cttttcatgatgatagaaagggaaaaggtcctaaaacggtatctaagtctatggcatctg 583
Query: 521 agagtgctttcttagaagaatcaaatgctactggttcgaaggttgtcctagcagatgctt 580
| |||| || | | | |||||||||||||||||||| |||||| ||||||| ||| | |
Sbjct: 584 attgtgcgttttcaaaggaatcaaatgctactggttctaaggttctcctagcggattcgt 643
Query: 581 atgagctaagtaattctccaatgcccttactagcttctgactctactgtaactacagaaa 640
||||||||| |||| ||||||| |||||||||||| || ||| ||||| || ||| ||
Sbjct: 644 atgagctaaataatcatccaatgagcttactagcttcggattctgctgtagctgcaggaa 703
Query: 641 agagtgaaaaagaaa 655
||| ||||||||||
Sbjct: 704 agaaggaaaaagaaa 718
Score = 71.9 bits (36), Expect = 1e-11
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 785 tagcggatgcttatgagctaaataatcctctaatgtcctcatttgcttctgattctgctg 844
|||||||| | |||||||||||||||| || |||| || | | ||||| ||||||||||
Sbjct: 632 tagcggattcgtatgagctaaataatcatccaatgagcttactagcttcggattctgctg 691
Query: 845 taactgcagaaaataatgaaaaggaaattatttctg 880
|| |||||| ||| || ||||| |||||||||||||
Sbjct: 692 tagctgcaggaaagaaggaaaaagaaattatttctg 727
>gnl|LJGI|TC63383 homologue to UniRef100_Q7CTN6 Cluster: Transcriptional regulator,
GntR family; n=1; Agrobacterium tumefaciens str.
C58|Rep: Transcriptional regulator, GntR family -
Agrobacterium tumefaciens (strain C58 / ATCC 33970),
partial (6%)
Length = 869
Score = 276 bits (139), Expect = 5e-73
Identities = 271/315 (86%)
Strand = Plus / Plus
Query: 341 gctctctttctgcaggctctctgttgaagtcaaattcttcaaaagctgcgaatttgaaac 400
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct: 171 gctctctttctgcaggctctctattgaagtcaaattcttccaaaactgcgaatttgaaac 230
Query: 401 ctaaaggacagaatgccaaggccggatgtttgcaaaagcagaaggtagagagaaatccag 460
||||||||||| || ||||| ||| ||||||||||||||||||| |||||| |||
Sbjct: 231 ctaaaggacagctagcaaaggctggacgtttgcaaaagcagaaggttgagagaggtccga 290
Query: 461 cttttcatgatgatagaaagggaaaaggccctatagcggtatctaaatctatgacatctg 520
|||||||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||
Sbjct: 291 cttttcatgatgatagaaagggaaaaggtcctaaaacggtatctaagtctatggcatctg 350
Query: 521 agagtgctttcttagaagaatcaaatgctactggttcgaaggttgtcctagcagatgctt 580
| |||| || | | | |||||||||||||||||||| |||||| ||||||| ||| | |
Sbjct: 351 attgtgcgttttcaaaggaatcaaatgctactggttctaaggttctcctagcggattcgt 410
Query: 581 atgagctaagtaattctccaatgcccttactagcttctgactctactgtaactacagaaa 640
||||||||| |||| ||||||| |||||||||||| || ||| ||||| || ||| ||
Sbjct: 411 atgagctaaataatcatccaatgagcttactagcttcggattctgctgtagctgcaggaa 470
Query: 641 agagtgaaaaagaaa 655
||| ||||||||||
Sbjct: 471 agaaggaaaaagaaa 485
Score = 165 bits (83), Expect = 1e-39
Identities = 188/223 (84%)
Strand = Plus / Plus
Query: 934 ctagcttcttattctgctgtaactgcagaaaagaatgaaaaggaaactagtcctggtggt 993
|||||||| ||||||||||| |||||| |||||| ||||| |||| || | |||||||
Sbjct: 440 ctagcttcggattctgctgtagctgcaggaaagaaggaaaaagaaattatttctggtggc 499
Query: 994 gagactttattttcaggatctcatttttgtaatcttgatgttgttggaagttcacgacaa 1053
|| |||| ||||||||||| | ||||||||||| ||||| ||||||||| ||| |||||
Sbjct: 500 gatacttatttttcaggatcccgtttttgtaatcctgatggtgttggaagatcaggacaa 559
Query: 1054 ctggatcatagatcacatgcaagcattcataacactcataaagactcaaactgtaccaat 1113
||||||||||||| |||||||| | || ||||| |||| ||||||| |||||||
Sbjct: 560 tcagatcatagatcacggccaagcatttacaaaactcacaaaggttcaaactctaccaat 619
Query: 1114 ataaagaagaaaaatgtgagccagcaagctgaacaccctgcaa 1156
| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 620 aaaaagaagaaaaatgtgagccaacaagctgaacgccctgcaa 662
Score = 131 bits (66), Expect = 2e-29
Identities = 106/118 (89%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 1159 ggccttgtcttcccaaatgttcatccttcatggctaggcaaatttatgatacacaaaagt 1218
||||||||| |||||||| | ||| ||||||||||||||||||| |||||||||| |||
Sbjct: 752 ggccttgtcgtcccaaatactgatcattcatggctaggcaaatttctgatacacaacagt 811
Query: 1219 gagggcattgcaaggaattgtgatgggtttcaagctcatttatcaagttgtgcatcac 1276
||||||||| || |||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 812 gagggcattccatggaattgtgatggggttctagctcatttatcaa-ttgtgcatcac 868
Score = 71.9 bits (36), Expect = 1e-11
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 785 tagcggatgcttatgagctaaataatcctctaatgtcctcatttgcttctgattctgctg 844
|||||||| | |||||||||||||||| || |||| || | | ||||| ||||||||||
Sbjct: 399 tagcggattcgtatgagctaaataatcatccaatgagcttactagcttcggattctgctg 458
Query: 845 taactgcagaaaataatgaaaaggaaattatttctg 880
|| |||||| ||| || ||||| |||||||||||||
Sbjct: 459 tagctgcaggaaagaaggaaaaagaaattatttctg 494
>gnl|LJGI|BW596591 similar to UniRef100_Q40458 Cluster: 23 kDa polypeptide of
water-oxidizing complex of photosystem II; n=1;
Nicotiana tabacum|Rep: 23 kDa polypeptide of
water-oxidizing complex of photosystem II - Nicotiana
tabacum (Common tobacco), partial (6%)
Length = 484
Score = 210 bits (106), Expect = 2e-53
Identities = 246/293 (83%), Gaps = 6/293 (2%)
Strand = Plus / Plus
Query: 341 gctctctttctgcaggctctctgttgaagtcaaattcttcaaaagctgcgaatttgaaac 400
|||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 12 gctctctttctggaggctctctgttgaagtcttactcttccgaagctgcgaatttgaaac 71
Query: 401 ctaaaggacagaatgccaaggccggatgtttgcaaaagcagaaggtagagagaaatccag 460
||||||||||| || |||| ||| ||||||||||||||||||| |||| | ||||
Sbjct: 72 ctaaaggacagctggcaaaggatggacgtttgcaaaagcagaaggttgagaaagatccgt 131
Query: 461 cttttcatgatgatagaaagggaaaaggccctatagcggtatctaaatctatgacatctg 520
|||||||||||||||||||||||||||| |||| | |||| ||||||| ||||||
Sbjct: 132 cttttcatgatgatagaaagggaaaaggtcctaaaacggt------atctatggcatctg 185
Query: 521 agagtgctttcttagaagaatcaaatgctactggttcgaaggttgtcctagcagatgctt 580
| |||| || | | | ||||||||||||| |||||| |||||| ||| ||||||||| |
Sbjct: 186 attgtgcgttttcaaaggaatcaaatgctattggttctaaggttctcccagcagatgcgt 245
Query: 581 atgagctaagtaattctccaatgcccttactagcttctgactctactgtaact 633
||| ||||| |||| |||||||| ||||||||||||||| ||| ||||||||
Sbjct: 246 atgtgctaaataatcctccaatgagcttactagcttctgattctgctgtaact 298
Score = 111 bits (56), Expect = 2e-23
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 934 ctagcttcttattctgctgtaactgcagaaaagaatgaaaaggaaactagtcctggtggt 993
||||||||| ||||||||||||||||| |||||| ||||| | ||||| | ||||||||
Sbjct: 275 ctagcttctgattctgctgtaactgcactaaagaaggaaaaaggaactatttctggtggt 334
Query: 994 gagactttattttcaggatctcatttttgtaatcttgatgttgttggaagttcacgacaa 1053
|| ||| ||||||||||| | ||||||||||| ||||||||||||| ||||| |||||
Sbjct: 335 gattcttatttttcaggatcccgtttttgtaatcctgatgttgttggaggttcaggacaa 394
Query: 1054 ctggatcatagatcac 1069
|||||||||||||
Sbjct: 395 tcagatcatagatcac 410
Score = 69.9 bits (35), Expect = 6e-11
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 697 aataatcctccgatgcccttactagcttctgattctgctataactacagcaaagaatgaa 756
||||||||||| ||| |||||||||||||||||||||| ||||| || |||||| |||
Sbjct: 254 aataatcctccaatgagcttactagcttctgattctgctgtaactgcactaaagaaggaa 313
Query: 757 gaagaaaccgtttctggtggtga 779
||| ||| |||||||||||||
Sbjct: 314 aaaggaactatttctggtggtga 336
Score = 67.9 bits (34), Expect = 2e-10
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 790 gatgcttatgagctaaataatcctctaatgtcctcatttgcttctgattctgctgtaact 849
||||| |||| |||||||||||||| |||| || | | |||||||||||||||||||||
Sbjct: 239 gatgcgtatgtgctaaataatcctccaatgagcttactagcttctgattctgctgtaact 298
Query: 850 gcagaaaataatgaaaaggaaattatttctgctggtga 887
||| ||| || ||||| | || |||||||| ||||||
Sbjct: 299 gcactaaagaaggaaaaaggaactatttctggtggtga 336
>gnl|LJGI|BP058055
Length = 470
Score = 194 bits (98), Expect = 1e-48
Identities = 140/154 (90%)
Strand = Plus / Minus
Query: 1820 agggtagaagcacaacaccagaaaatggttctgttaggactgagcaccatgttaaggagc 1879
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 agggtagaagcacaacaccagaaaatggttctgttaggattgagcaccatgttaaggagc 309
Query: 1880 taccaacatcactttctcctgcaatgctttcaactgtggaaaatatggacccgcgtgata 1939
||||||||||||| ||||||||| || |||||||||||||||||| |||| ||||||
Sbjct: 308 taccaacatcactctctcctgcaccgccttcaactgtggaaaatatagacctacgtgatt 249
Query: 1940 ggcacgccacagaatctttgattcttctctctag 1973
|| |||| | ||| |||||||||||||||||||
Sbjct: 248 gggacgctgcggaagctttgattcttctctctag 215
Score = 89.7 bits (45), Expect = 6e-17
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 1877 agctaccaacatcactttctcctgcaatgctttcaactgtggaaaatatggacccgcgtg 1936
|||||||||||||||| ||||||| | || ||||||||||||||||||||| | |||||
Sbjct: 470 agctaccaacatcactctctcctgtaccgccttcaactgtggaaaatatggatcggcgtg 411
Query: 1937 ataggcacgccacagaatctttgattcttctctctag 1973
|| || |||| | ||| |||||||||||||||||||
Sbjct: 410 attgggacgctgcggaagctttgattcttctctctag 374