Miyakogusa Predicted Gene
- Lj2g3v1880870.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1880870.1 tr|I1J980|I1J980_SOYBN DNA polymerase OS=Glycine
max GN=Gma.48317 PE=3 SV=1,73.88,0,coiled-coil,NULL;
DNAPOLB,DNA-directed DNA polymerase, family B; DNA polymerase type-B
family,DNA-di,CUFF.38013.1
(4080 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP076374 similar to UniRef100_A7PLB6 Cluster: DNA polym... 458 e-127
gnl|LJGI|TC67300 similar to UniRef100_A7PLB6 Cluster: DNA polyme... 357 4e-97
gnl|LJGI|TC70430 similar to UniRef100_A7PLB6 Cluster: DNA polyme... 329 8e-89
gnl|LJGI|AV777775 similar to UniRef100_Q892A6 Cluster: Single-st... 141 4e-32
gnl|LJGI|TC67710 similar to UniRef100_A7PLB6 Cluster: DNA polyme... 141 4e-32
>gnl|LJGI|BP076374 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (5%)
Length = 378
Score = 458 bits (231), Expect = e-127
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 1057 ctacaggtttcaaacttttctacacgctcagcttctcaaagggttagctggtgcaaattt 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctacaggtttcaaacttttctacacgctcagcttctcaaagggttagctggtgcaaattt 319
Query: 1117 gaagtgactgttgactctcctaaagacataaggatttctccaccttccttaaaaatcact 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaagtgactgttgactctcctaaagacataaggatttctccaccttccttaaaaatcact 259
Query: 1177 tgcgagatacctcctgttgttgtcgcggcgataaacttgaaaaccacctatgaaaagcag 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgcgagatacctcctgttgttgtcgcggcgataaacttgaaaaccacctatgaaaagcag 199
Query: 1237 aacataaatgaaattgtatccgcatccgttgtctgttgccatatggtcaag 1287
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aacataaatgaaattgtatccgcatccgttgtctgttgccatatggtcaag 148
>gnl|LJGI|TC67300 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (5%)
Length = 578
Score = 357 bits (180), Expect = 4e-97
Identities = 185/187 (98%)
Strand = Plus / Plus
Query: 1 atgttcacttcctcgaatttcaagaagaaaagggacgacaaggccagcgagagcatcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgttcacttcctcgaatttcaagaagaaaagggacgacaaggccagcgagagcatcgtt 451
Query: 61 gatgacgttattgcagagttcgcaccggatgagaacgataggctgaggcgcagaagggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gatgacgttattgcagagttcgcaccggatgagaacgataggctgaggcgcagaagggct 511
Query: 121 aagccatctgctgattctattagggcttctttggtgtctggaaattttgcaattgacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 aagccatctgctgattctattagggcttctttggtgtctggaaattttgncattgacaat 571
Query: 181 gccgagc 187
|||||||
Sbjct: 572 gccgagc 578
>gnl|LJGI|TC70430 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (5%)
Length = 583
Score = 329 bits (166), Expect = 8e-89
Identities = 199/210 (94%)
Strand = Plus / Plus
Query: 3850 agaaagtacactgaagcagacttgtacaagcaactctcatatttctgccatgtattcgac 3909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaaagtacactgaagcagacttgtacaagcaactctcatatttctgccatgtattcgat 60
Query: 3910 actgttagttgtatagataagttggaggcaaaatctaggataacggtagagaaagagttg 3969
|||| |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 61 actgctagttgtatagaaaagttggaggaaaaatctaggataccagtagagaaagagttg 120
Query: 3970 atcaaaattaggccgatagttgatccaatagcatcaacagtacagaagatcagggaccgt 4029
|||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 121 atcaaaattaggccaatagttgacccagtagcatcaacagtacagaagatgagggaccgt 180
Query: 4030 tgtgcctatggttgggtgaagttggaggac 4059
||||||||||||||||||||| ||||||||
Sbjct: 181 tgtgcctatggttgggtgaagctggaggac 210
>gnl|LJGI|AV777775 similar to UniRef100_Q892A6 Cluster: Single-stranded-DNA-specific
exonuclease recJ; n=1; Clostridium tetani|Rep:
Single-stranded-DNA-specific exonuclease recJ -
Clostridium tetani, partial (5%)
Length = 520
Score = 141 bits (71), Expect = 4e-32
Identities = 86/91 (94%)
Strand = Plus / Minus
Query: 3969 gatcaaaattaggccgatagttgatccaatagcatcaacagtacagaagatcagggaccg 4028
||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct: 520 gatcaaaattaggccaatagttgacccagtagcatcaacagtacagaagatgagggaccg 461
Query: 4029 ttgtgcctatggttgggtgaagttggaggac 4059
|||||||||||||||||||||| ||||||||
Sbjct: 460 ttgtgcctatggttgggtgaagctggaggac 430
>gnl|LJGI|TC67710 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis
vinifera|Rep: DNA polymerase - Vitis vinifera (Grape),
partial (8%)
Length = 963
Score = 141 bits (71), Expect = 4e-32
Identities = 104/115 (90%)
Strand = Plus / Plus
Query: 1 atgttcacttcctcgaatttcaagaagaaaagggacgacaaggccagcgagagcatcgtt 60
||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| |||
Sbjct: 499 atgttcacttcctcgaatttcaagaagaatagggatgagaaggctagtgagagcattgtt 558
Query: 61 gatgacgttattgcagagttcgcaccggatgagaacgataggctgaggcgcagaa 115
||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 559 gatgatgttattgcggagtttgcaccggatgagaatgataggctgaggcgaagaa 613
Score = 121 bits (61), Expect = 4e-26
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 298 agtagtgagggtttgagtgaggatagtgtggtgaaggatattgagatggaagaacgacca 357
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 871 agtaatgagggtttgagtgaggataaagtggtgaaggacattgagatggaagaaaaacca 930
Query: 358 gctccgaaaaaggaggttttcactttgaatgcg 390
|||| |||||| |||||||||||||||||||||
Sbjct: 931 gctctgaaaaaagaggttttcactttgaatgcg 963