Miyakogusa Predicted Gene

Lj2g3v1560900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1560900.1 tr|E6U290|E6U290_BACCJ Ribonuclease H OS=Bacillus
cellulosilyticus (strain ATCC 21833 / DSM 2522 /
F,30.84,0.0004,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RVT_3,NULL,CUFF.37509.1
         (153 letters)

Database: trembl 
           41,451,118 sequences; 13,208,986,710 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M1DNC4_SOLTU (tr|M1DNC4) Uncharacterized protein (Fragment) OS=S...    56   4e-06

>M1DNC4_SOLTU (tr|M1DNC4) Uncharacterized protein (Fragment) OS=Solanum tuberosum
           GN=PGSC0003DMG400041332 PE=4 SV=1
          Length = 178

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 51  WLKTGHEKFKLNLDGSNLGNPGN---------------AARAIFFGSCLNNEVELVAILE 95
           W K      KLN DGS L NP                  A AI  G+  NN+ EL A   
Sbjct: 1   WEKPSQPLLKLNTDGSALRNPRKIGGGGILRDHQGRMIYAFAIPLGTGTNNQAELQAASH 60

Query: 96  GLLVCKQLGYAGIDIECDSNVVVSWIRSPSCKLWYLWDFWESLKELLDVMD 146
           GL  C Q GY  I +E DS++V+ W+       W L  +   L+ L+  ++
Sbjct: 61  GLYWCIQHGYKKIHLEVDSDLVIKWLSKQITLPWNLQQYIRDLQNLVQKLE 111