Miyakogusa Predicted Gene

Lj2g3v1560900.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1560900.1 tr|E6U290|E6U290_BACCJ Ribonuclease H OS=Bacillus
cellulosilyticus (strain ATCC 21833 / DSM 2522 /
F,30.84,0.0004,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RVT_3,NULL,CUFF.37509.1
         (462 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77277                                                      246   1e-64
gnl|LJGI|BP062431 similar to UniRef100_A7QU48 Cluster: Chromosom...    76   2e-13

>gnl|LJGI|TC77277 
          Length = 657

 Score =  246 bits (124), Expect = 1e-64
 Identities = 197/220 (89%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                       
Query: 241 ggcagttgcttgaataatgaagttgagttagt-cgctattcttgaaggcttacttgtgtg 299
           ||||||||||  |||||||||| ||||||  | |||||||||||||||||||||||||||
Sbjct: 139 ggcagttgctcaaataatgaagctgagtttatgcgctattcttgaaggcttacttgtgtg 198

                                                                       
Query: 300 taagcaattggggtatgctggtatcgacattgaatgtgattctaatgttgttgttagctg 359
           ||||| |||||| |||| |||||| | ||||||||||||||||||| |||||||||||||
Sbjct: 199 taagccattgggttatgatggtattggcattgaatgtgattctaatattgttgttagctg 258

                                                                       
Query: 360 gattcggtctccttcttgcaaactttggtatctttgggacttttgggaatcccttaagga 419
           ||||||||||| ||||||| | |||||||||||||||||||| | || | | ||||||| 
Sbjct: 259 gattcggtctcgttcttgccagctttggtatctttgggacttctagggaccacttaaggg 318

                                                   
Query: 420 gttattggatgttatggataattctattcatcatattttt 459
           |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 319 gttattggatgttaaggattattctattcatcatattttt 358



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                       
Query: 147 aagatggcttaaaacggggcatgaaaaatttaagcttaatttggatgggagtaatcttgg 206
           ||||||||||||| ||| ||||| || ||||||||||||||| |||||||||| ||||||
Sbjct: 1   aagatggcttaaaccggtgcatggaagatttaagcttaattttgatgggagtagtcttgg 60

                          
Query: 207 caatcctggaaatgc 221
            |||| |||||||||
Sbjct: 61  aaatcgtggaaatgc 75


>gnl|LJGI|BP062431 similar to UniRef100_A7QU48 Cluster: Chromosome chr2 scaffold_176,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_176, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 482

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 245 gttgcttgaataatgaagttgagttagtcgctattcttgaaggcttacttgtgt 298
           |||||| ||||||||||| |||||||  ||||||||||||||||||||||||||
Sbjct: 389 gttgctcgaataatgaagctgagttacgcgctattcttgaaggcttacttgtgt 336