Miyakogusa Predicted Gene

Lj2g3v1550460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550460.1 Non Chatacterized Hit- tr|D8RDT7|D8RDT7_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,51.49,1e-18,UPF0114,Uncharacterised protein family UPF0114;
FAMILY NOT NAMED,NULL; seg,NULL,CUFF.37448.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19390.1 | Symbols:  | Uncharacterised protein family (UPF011...   217   7e-57
AT5G13720.1 | Symbols:  | Uncharacterised protein family (UPF011...   161   4e-40

>AT4G19390.1 | Symbols:  | Uncharacterised protein family (UPF0114)
           | chr4:10574903-10576355 REVERSE LENGTH=273
          Length = 273

 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 129/157 (82%)

Query: 89  DRVEEGIEKVIYRFRFMAILGVFGSLFGSFLCFMRGCTFVAESFMKYLVDRTKVIQMLIE 148
           + +EEGIEKVIY  RFM  LG  GSL GS LCF++GC +V +SF++Y V+R KVI +L+E
Sbjct: 95  EALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQYSVNRGKVIFLLVE 154

Query: 149 AVDVYLLGTVMLVFGMGLYELFVSTLDSASSLSDKKPSGRSNLFGLFTLKERPKWLDINS 208
           A+D+YLLGTVMLVFG+GLYELF+S LD++ S +    S RS+LFG+FTLKERP+WL++ S
Sbjct: 155 AIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQWLEVKS 214

Query: 209 VNELKTKIGHVIVMLLLIGLFDRSKKAAINTPVDLLC 245
           V+ELKTK+GHVIVMLLLIGLFD+SK+  I +  DLLC
Sbjct: 215 VSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLC 251


>AT5G13720.1 | Symbols:  | Uncharacterised protein family (UPF0114)
           | chr5:4427960-4429029 FORWARD LENGTH=262
          Length = 262

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 112/161 (69%), Gaps = 6/161 (3%)

Query: 92  EEGIEKVIYRFRFMAILGVFGSLFGSFLCFMRGCTFVAESFMKYLVDRTKVI---QM--- 145
           E  +E++I+ FRF+A+L V GSL GS LCF+ GC ++ E++  Y  + +K I   QM   
Sbjct: 80  ESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMVLR 139

Query: 146 LIEAVDVYLLGTVMLVFGMGLYELFVSTLDSASSLSDKKPSGRSNLFGLFTLKERPKWLD 205
           L+EA+DVYL GTVML+F MGLY LF+S           +    S+LFG+F +KERPKW+ 
Sbjct: 140 LVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGMFAMKERPKWMK 199

Query: 206 INSVNELKTKIGHVIVMLLLIGLFDRSKKAAINTPVDLLCF 246
           I+S++ELKTK+GHVIVM+LL+ +F+RSK   I T +DLL +
Sbjct: 200 ISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSY 240