Miyakogusa Predicted Gene

Lj2g3v1369270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1369270.1 Non Chatacterized Hit- tr|I0YUY1|I0YUY1_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,26.55,4e-18,domain in transcription factors and synapse-,BSD;
BSD,BSD; seg,NULL; SUBFAMILY NOT NAMED,NULL; SYNAP,CUFF.36852.1
         (467 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13110.1 | Symbols:  | BSD domain-containing protein | chr4:7...   213   3e-55
AT1G03350.1 | Symbols:  | BSD domain-containing protein | chr1:8...   189   4e-48

>AT4G13110.1 | Symbols:  | BSD domain-containing protein |
           chr4:7641507-7642457 FORWARD LENGTH=316
          Length = 316

 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 145/227 (63%), Gaps = 25/227 (11%)

Query: 43  FGGLIQTLASKSESALENYRRDLEEFSSGLRKETAVIREAASRAVKDLPGSLDAGASVAQ 102
           FG LI+TL++KSES + +YRRDL EF S L+KET++IR  ASR    LP SL+ GASVA 
Sbjct: 25  FGNLIKTLSTKSESVIGSYRRDLVEFGSELKKETSIIRRVASR----LPDSLEIGASVAS 80

Query: 103 ESLESVGQAIDDIGSTVWKSTAQIISQGRESLMAPXXXXXXXXXXXXXXVYRKQLSSGSV 162
           ESLESVGQ IDDIG+TVWKSTA+IIS+G+ESL                     + +    
Sbjct: 81  ESLESVGQVIDDIGATVWKSTAKIISRGKESL---------------------EPNRDRT 119

Query: 163 GQGLDLKRYSRFDALVRALQSDVNTYLEEPEDLGNFNEWKLGFELDXXXXXXXXXXXXXX 222
            Q L LK Y RF+ ++ ALQSD  T++ EP+DL +F  W LG +L+              
Sbjct: 120 NQVLSLKPYRRFEMMLLALQSDKGTFVREPDDLSDFENWSLGLKLEEKRNEIVELINGNK 179

Query: 223 XXXRIYGEVVPSRIDHESFWSRYFYKFHKLKQVEDARAKLVKRAISG 269
               IY E+VP  +D E+FW RY+YK +KL+QVE+AR KLVKRAISG
Sbjct: 180 GVKEIYEEIVPVEVDAETFWRRYYYKVYKLEQVEEARVKLVKRAISG 226


>AT1G03350.1 | Symbols:  | BSD domain-containing protein |
           chr1:822834-824246 REVERSE LENGTH=470
          Length = 470

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 131/228 (57%), Gaps = 30/228 (13%)

Query: 41  WSFGGLIQTLASKSESALENYRRDLEEFSSGLRKETAVIREAASRAVKDLPGSLDAGASV 100
           WSFGGL++TLA++SES +E YRRDLEEF +GL+KE                        V
Sbjct: 49  WSFGGLMKTLATRSESVIETYRRDLEEFGTGLKKEI----------------------EV 86

Query: 101 AQESLESVGQAIDDIGSTVWKSTAQIISQGRESLMAPXXXXXXXXXXXXXXVYRKQLSSG 160
           AQ SL +VG AID++G+TV K TA+II+QG+E+++A                 R+   S 
Sbjct: 87  AQGSLGTVGHAIDELGNTVLKGTAEIIAQGKEAILAAGNESDSSDNNSSQSFGRRDSFSS 146

Query: 161 SVGQGLDLKRYSRFDALVRALQSDVNTYLEEPEDLGNFNEWKLGFELDXXXXXXXXXXXX 220
                   K YSRFDA +RA+Q D+NTY EEPED  ++ +W+  F LD            
Sbjct: 147 --------KPYSRFDAQIRAVQGDLNTYCEEPEDSDDYKKWESAFSLDGKAEEMEKLLEE 198

Query: 221 XXXXXRIYGEVVPSRIDHESFWSRYFYKFHKLKQVEDARAKLVKRAIS 268
                 +Y  VVPS +DHE+FW RYFY+ +KLKQ ED RA LVKRAIS
Sbjct: 199 NGDMKGVYKRVVPSMVDHETFWFRYFYRVNKLKQAEDLRANLVKRAIS 246