Miyakogusa Predicted Gene
- Lj2g3v1204560.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1204560.1 tr|B6TNU9|B6TNU9_MAIZE BSD domain containing
protein OS=Zea mays PE=2 SV=1,35.86,1e-18,BSD,BSD; domain in
transcription factors and synapse-,BSD; seg,NULL,CUFF.36510.1
(861 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62778 similar to UniRef100_Q67YP2 Cluster: MRNA, comp... 1578 0.0
gnl|LJGI|FS328500 similar to UniRef100_Q67YP2 Cluster: MRNA, com... 204 7e-52
gnl|LJGI|TC77337 similar to UniRef100_Q67YP2 Cluster: MRNA, comp... 200 1e-50
gnl|LJGI|TC79573 similar to UniRef100_Q67Z63 Cluster: Mitochondr... 196 2e-49
gnl|LJGI|TC67841 similar to UniRef100_A7PIM6 Cluster: Chromosome... 188 4e-47
>gnl|LJGI|TC62778 similar to UniRef100_Q67YP2 Cluster: MRNA, complete cds, clone:
RAFL24-17-M19; n=1; Arabidopsis thaliana|Rep: MRNA,
complete cds, clone: RAFL24-17-M19 - Arabidopsis thaliana
(Mouse-ear cress), partial (57%)
Length = 1414
Score = 1578 bits (796), Expect = 0.0
Identities = 799/800 (99%)
Strand = Plus / Plus
Query: 62 ccgaaaccgccaagaaatccaaggatttcgccgccgaggcctccaaacatgccgacatca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccgaaaccgccaagaaatccaaggatttcgccgccgaggcctccaaacatgccgacatca 273
Query: 122 tcaaaaccgccgccctccgccaagcggatcagatcaagtcgttctccgacaccatctcca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcaaaaccgccgccctccgccaagcggatcagatcaagtcgttctccgacaccatctcca 333
Query: 182 tccctccccaactctccgccattgccgctgctgctaccgctacggcaccaccacaaccct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccctccccaactctccgccattgccgctgctgctaccgctacggcaccaccacaaccct 393
Query: 242 ccgtttctgaggaagaccttgaaaagttcggcgtcaccgatgatctcagatccttcgtca 301
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 394 ccgtttctgaggaagaccttgaaaagttctgcgtcaccgatgatctcagatccttcgtca 453
Query: 302 aagggctcacttctaccaccttcacaaactttaccctcagttctgatgaatctgagggtt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aagggctcacttctaccaccttcacaaactttaccctcagttctgatgaatctgagggtt 513
Query: 362 ctaatgtgcccacttcgggctcgaatgttcggaaggatcttaatgagttccaggagaagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctaatgtgcccacttcgggctcgaatgttcggaaggatcttaatgagttccaggagaagc 573
Query: 422 atgccactcttgttttaactactgtcaaggaaatttcaaagttgagatatgaactatgtc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atgccactcttgttttaactactgtcaaggaaatttcaaagttgagatatgaactatgtc 633
Query: 482 cgcgtgctatgaaagaaagacacttttggaagatatatttcatacttgtcaacacccacg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cgcgtgctatgaaagaaagacacttttggaagatatatttcatacttgtcaacacccacg 693
Query: 542 tggctccgtatgagaagcgatatatggaggaggttcagctcagagaagcagcaaagcaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tggctccgtatgagaagcgatatatggaggaggttcagctcagagaagcagcaaagcaga 753
Query: 602 atgtggatactgaggtagagcaaactgctgttagtggaggatctggaaaggctgaagcaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atgtggatactgaggtagagcaaactgctgttagtggaggatctggaaaggctgaagcaa 813
Query: 662 cagggaagaatttgaagagtaaatcttccaattcatcctctgagcaggacttggattcat 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cagggaagaatttgaagagtaaatcttccaattcatcctctgagcaggacttggattcat 873
Query: 722 ttcttcttggagaccttgaagacagtgatggaggtccagatgatggtgagggcagctttg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ttcttcttggagaccttgaagacagtgatggaggtccagatgatggtgagggcagctttg 933
Query: 782 atgatgattttgacaagattggcaattctgatgttgaagatgagaagcatgtgaagaaaa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 atgatgattttgacaagattggcaattctgatgttgaagatgagaagcatgtgaagaaaa 993
Query: 842 catcttctgcaacagtttag 861
||||||||||||||||||||
Sbjct: 994 catcttctgcaacagtttag 1013
Score = 125 bits (63), Expect = 5e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 atggaggacttctggaagagagccaagacattcgcggaggaggcggcgaagaaatcgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atggaggacttctggaagagagccaagacattcgcggaggaggcggcgaagaaatcgcaa 167
Query: 61 gcc 63
|||
Sbjct: 168 gcc 170
>gnl|LJGI|FS328500 similar to UniRef100_Q67YP2 Cluster: MRNA, complete cds, clone:
RAFL24-17-M19; n=1; Arabidopsis thaliana|Rep: MRNA,
complete cds, clone: RAFL24-17-M19 - Arabidopsis
thaliana (Mouse-ear cress), partial (6%)
Length = 788
Score = 204 bits (103), Expect = 7e-52
Identities = 168/192 (87%), Gaps = 17/192 (8%)
Strand = Plus / Plus
Query: 569 aggaggttcagctcagagaagcagcaaagcagaatgtggatactgaggtagagcaaactg 628
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggaggttcaactcagagaagcagcaaagcagaatgtggatactgaggtac--------- 488
Query: 629 ctgttagtggaggatctggaaaggctgaagcaacagggaagaatttgaagagtaaatctt 688
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 -------tggagaa-ctggaaaggctgaagcaacagggaagaatttgaagagtaaatctt 540
Query: 689 ccaattcatcctctgagcaggacttggattcatttcttcttggagaccttgaagacagtg 748
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 541 ccaattcatcctctgagcaagacttcgattcatttcttcttggagatcttgaagacaatg 600
Query: 749 atggaggtccag 760
||||||||||||
Sbjct: 601 atggaggtccag 612
>gnl|LJGI|TC77337 similar to UniRef100_Q67YP2 Cluster: MRNA, complete cds, clone:
RAFL24-17-M19; n=1; Arabidopsis thaliana|Rep: MRNA,
complete cds, clone: RAFL24-17-M19 - Arabidopsis
thaliana (Mouse-ear cress), partial (6%)
Length = 814
Score = 200 bits (101), Expect = 1e-50
Identities = 113/117 (96%)
Strand = Plus / Plus
Query: 644 ctggaaaggctgaagcaacagggaagaatttgaagagtaaatcttccaattcatcctctg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 ctggaaaggctgaagcaacagggaagaatttgaagagtaaatcttccaattcatcctctg 83
Query: 704 agcaggacttggattcatttcttcttggagaccttgaagacagtgatggaggtccag 760
|||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 84 agcaagacttcgattcatttcttcttggagatcttgaagacaatgatggaggtccag 140
>gnl|LJGI|TC79573 similar to UniRef100_Q67Z63 Cluster: Mitochondrial carrier like
protein; n=1; Arabidopsis thaliana|Rep: Mitochondrial
carrier like protein - Arabidopsis thaliana (Mouse-ear
cress), partial (8%)
Length = 1206
Score = 196 bits (99), Expect = 2e-49
Identities = 167/192 (86%), Gaps = 17/192 (8%)
Strand = Plus / Plus
Query: 569 aggaggttcagctcagagaagcagcaaagcagaatgtggatactgaggtagagcaaactg 628
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggaggttcagctcagagaagcagcaaagcagaatgtggatactgaggtac--------- 286
Query: 629 ctgttagtggaggatctggaaaggctgaagcaacagggaagaatttgaagagtaaatctt 688
||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 287 -------tggagaa-ctggaaaggctgaagcaacagagaagaatttgaagagtaaatctt 338
Query: 689 ccaattcatcctctgagcaggacttggattcatttcttcttggagaccttgaagacagtg 748
||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 339 ccaattcatccactgagcaagacttcgattcatttcttcttggagatcttgaagacaatg 398
Query: 749 atggaggtccag 760
||||||||||||
Sbjct: 399 atggaggtccag 410
>gnl|LJGI|TC67841 similar to UniRef100_A7PIM6 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 2159
Score = 188 bits (95), Expect = 4e-47
Identities = 166/192 (86%), Gaps = 17/192 (8%)
Strand = Plus / Plus
Query: 569 aggaggttcagctcagagaagcagcaaagcagaatgtggatactgaggtagagcaaactg 628
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 595 aggaggttcagctcaaagaagcagcaaagcagaatgtggatactgaggtac--------- 645
Query: 629 ctgttagtggaggatctggaaaggctgaagcaacagggaagaatttgaagagtaaatctt 688
||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 646 -------tggagaa-ctggaaaggctgaagcaacagagaagaatttgaagagtaaatctt 697
Query: 689 ccaattcatcctctgagcaggacttggattcatttcttcttggagaccttgaagacagtg 748
||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 698 ccaattcatccactgagcaagacttcgattcatttcttcttggagatcttgaagacaatg 757
Query: 749 atggaggtccag 760
||||||||||||
Sbjct: 758 atggaggtccag 769