Miyakogusa Predicted Gene

Lj2g3v1182650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1182650.1 Non Characterized Hit- tr|F0ZE43|F0ZE43_DICPU
Putative uncharacterized protein OS=Dictyostelium
purp,36.69,0.0000000000004,Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic
acid-bindin,CUFF.36384.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g010210.2 | nucleic acid-binding, OB-fold-like protein | H...   238   2e-63
Medtr3g010210.3 | nucleic acid-binding, OB-fold-like protein | H...   238   2e-63
Medtr3g010210.1 | nucleic acid-binding, OB-fold-like protein | H...   237   2e-63

>Medtr3g010210.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr3:2341816-2337071 | 20130731
          Length = 137

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 120/135 (88%)

Query: 1   MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFD 60
           MI+LKD+VPAAQNNI+TKFI+LEKG T LEGQNK CLALVADETAAVH QLWGDECD FD
Sbjct: 1   MIVLKDVVPAAQNNIETKFIILEKGRTILEGQNKKCLALVADETAAVHLQLWGDECDYFD 60

Query: 61  LGDIICLTNGIFSYQRNNLLLRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTY 120
            GDI+ +TNGIFSY R NL+LRAGKRGKL KIGEFTMSYVETPNMSEIHWIPDP N + Y
Sbjct: 61  SGDIVYITNGIFSYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNPKKY 120

Query: 121 IQEHVVSPHSRIFPP 135
           IQE+V+SPHSR F P
Sbjct: 121 IQEYVISPHSRAFSP 135


>Medtr3g010210.3 | nucleic acid-binding, OB-fold-like protein | HC |
           chr3:2340308-2337071 | 20130731
          Length = 137

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 120/135 (88%)

Query: 1   MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFD 60
           MI+LKD+VPAAQNNI+TKFI+LEKG T LEGQNK CLALVADETAAVH QLWGDECD FD
Sbjct: 1   MIVLKDVVPAAQNNIETKFIILEKGRTILEGQNKKCLALVADETAAVHLQLWGDECDYFD 60

Query: 61  LGDIICLTNGIFSYQRNNLLLRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTY 120
            GDI+ +TNGIFSY R NL+LRAGKRGKL KIGEFTMSYVETPNMSEIHWIPDP N + Y
Sbjct: 61  SGDIVYITNGIFSYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNPKKY 120

Query: 121 IQEHVVSPHSRIFPP 135
           IQE+V+SPHSR F P
Sbjct: 121 IQEYVISPHSRAFSP 135


>Medtr3g010210.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr3:2343473-2337200 | 20130731
          Length = 196

 Score =  237 bits (605), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 120/135 (88%)

Query: 1   MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFD 60
           MI+LKD+VPAAQNNI+TKFI+LEKG T LEGQNK CLALVADETAAVH QLWGDECD FD
Sbjct: 60  MIVLKDVVPAAQNNIETKFIILEKGRTILEGQNKKCLALVADETAAVHLQLWGDECDYFD 119

Query: 61  LGDIICLTNGIFSYQRNNLLLRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTY 120
            GDI+ +TNGIFSY R NL+LRAGKRGKL KIGEFTMSYVETPNMSEIHWIPDP N + Y
Sbjct: 120 SGDIVYITNGIFSYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNPKKY 179

Query: 121 IQEHVVSPHSRIFPP 135
           IQE+V+SPHSR F P
Sbjct: 180 IQEYVISPHSRAFSP 194