Miyakogusa Predicted Gene

Lj2g3v1182650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1182650.1 Non Chatacterized Hit- tr|F0ZE43|F0ZE43_DICPU
Putative uncharacterized protein OS=Dictyostelium
purp,36.69,0.0000000000004,Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic
acid-bindin,CUFF.36384.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63690.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   200   3e-52

>AT5G63690.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr5:25492864-25493283 REVERSE LENGTH=139
          Length = 139

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 2   ILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFDL 61
           + LKDIVPAAQNNIDT+FI+L+K  ++       C+AL ADETAAVH QLWGDECD F+ 
Sbjct: 3   LFLKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAFEA 62

Query: 62  GDIICLTNGIFSYQRNN-LLLRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTY 120
           GDI+ LTNGIFSY RN+ L+LRAGKRGK+ K+GEFT+++VETPN+SEI WIPDP N + Y
Sbjct: 63  GDIVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPKRY 122

Query: 121 IQEHVVSPHSRIFPPNP 137
           IQ  VVS +SRIFPP P
Sbjct: 123 IQSGVVSAYSRIFPPLP 139