Miyakogusa Predicted Gene

Lj2g3v1019900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019900.1 Non Chatacterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,78.95,8e-17,RNase_H,Ribonuclease H domain;
RNASE_H,Ribonuclease H domain; Ribonuclease H-like,Ribonuclease
H-lik,CUFF.35943.1
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g04490.1                                                        87   3e-18
Glyma13g04490.4                                                        87   4e-18
Glyma13g04490.2                                                        87   4e-18
Glyma19g01570.1                                                        48   3e-06

>Glyma13g04490.1 
          Length = 283

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 48/57 (84%), Gaps = 3/57 (5%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           CTL FDG+SKGNPG AGAGA+L   DGSKVY LREGVG QTNN AEYR LILGLKHA
Sbjct: 145 CTLHFDGASKGNPGPAGAGAILH--DGSKVYRLREGVGIQTNNVAEYRSLILGLKHA 199


>Glyma13g04490.4 
          Length = 282

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 48/57 (84%), Gaps = 3/57 (5%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           CTL FDG+SKGNPG AGAGA+L   DGSKVY LREGVG QTNN AEYR LILGLKHA
Sbjct: 144 CTLHFDGASKGNPGPAGAGAILH--DGSKVYRLREGVGIQTNNVAEYRSLILGLKHA 198


>Glyma13g04490.2 
          Length = 282

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 48/57 (84%), Gaps = 3/57 (5%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           CTL FDG+SKGNPG AGAGA+L   DGSKVY LREGVG QTNN AEYR LILGLKHA
Sbjct: 144 CTLHFDGASKGNPGPAGAGAILH--DGSKVYRLREGVGIQTNNVAEYRSLILGLKHA 198


>Glyma19g01570.1 
          Length = 184

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 2/39 (5%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVGNQ 66
           C L FDG+SKGNPG AGAGA+LR  DGSK+     + NQ
Sbjct: 94  CNLHFDGASKGNPGPAGAGAILR--DGSKIQGLWKIKNQ 130