Miyakogusa Predicted Gene

Lj2g3v1019900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019900.1 Non Chatacterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,78.95,8e-17,RNase_H,Ribonuclease H domain;
RNASE_H,Ribonuclease H domain; Ribonuclease H-like,Ribonuclease
H-lik,CUFF.35943.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    87   2e-18
AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    87   2e-18
AT5G51080.2 | Symbols:  | RNase H family protein | chr5:20769022...    82   6e-17
AT5G51080.1 | Symbols:  | RNase H family protein | chr5:20769022...    82   6e-17
AT5G51080.3 | Symbols:  | RNase H family protein | chr5:20769022...    82   1e-16
AT1G24090.1 | Symbols:  | RNase H family protein | chr1:8520834-...    75   1e-14

>AT3G01410.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 83
           CT+EFDG+SKGNPG AGAGAVLRA D S + YLREGVGN TNN AEYR L+LGL+ A
Sbjct: 155 CTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211


>AT3G01410.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:153650-155439 REVERSE
           LENGTH=294
          Length = 294

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 83
           CT+EFDG+SKGNPG AGAGAVLRA D S + YLREGVGN TNN AEYR L+LGL+ A
Sbjct: 155 CTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211


>AT5G51080.2 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           C +EFDG+SKGNPG +GA AVL+ EDGS ++ +R+G+G  TNN AEY GLILGLKHA
Sbjct: 186 CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 242


>AT5G51080.1 | Symbols:  | RNase H family protein |
           chr5:20769022-20770675 REVERSE LENGTH=322
          Length = 322

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           C +EFDG+SKGNPG +GA AVL+ EDGS ++ +R+G+G  TNN AEY GLILGLKHA
Sbjct: 186 CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 242


>AT5G51080.3 | Symbols:  | RNase H family protein |
           chr5:20769022-20770486 REVERSE LENGTH=259
          Length = 259

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 47/57 (82%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKVY-LREGVGNQTNNQAEYRGLILGLKHA 83
           C +EFDG+SKGNPG +GA AVL+ EDGS ++ +R+G+G  TNN AEY GLILGLKHA
Sbjct: 123 CIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 179


>AT1G24090.1 | Symbols:  | RNase H family protein |
           chr1:8520834-8522737 FORWARD LENGTH=353
          Length = 353

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)

Query: 28  CTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 83
           C +EFDG+SKGNPG +GA AVL+ EDGS +  +R+G+G  TNN AEY  LILGLK+A
Sbjct: 217 CFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYA 273