Miyakogusa Predicted Gene

Lj2g3v1019900.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v1019900.1 Non Chatacterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,78.95,8e-17,RNase_H,Ribonuclease H domain;
RNASE_H,Ribonuclease H domain; Ribonuclease H-like,Ribonuclease
H-lik,CUFF.35943.1
         (249 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome...   492   e-139
gnl|LJGI|TC57817 weakly similar to UniRef100_A7Q2I1 Cluster: Chr...   297   2e-80
gnl|LJGI|TC76039 weakly similar to UniRef100_A7PMF0 Cluster: Chr...   190   3e-48

>gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome chr14 scaffold_21,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_21, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (37%)
          Length = 860

 Score =  492 bits (248), Expect = e-139
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgagtatccatatggttcaagagcttaccgtgggaattcctcatcaggtggcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  atggctgagtatccatatggttcaagagcttaccgtgggaattcctcatcaggtggcagg 138

                                                                       
Query: 61  caatctaatgctaatcgttcttgtacccttgagtttgatggttcttccaaaggaaatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 caatctaatgctaatcgttcttgtacccttgagtttgatggttcttccaaaggaaatcct 198

                                                                       
Query: 121 ggatcagctggtgcaggagctgtgctgcgtgctgaagatggaagcaaggtctatctgcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggatcagctggtgcaggagctgtgctgcgtgctgaagatggaagcaaggtctatctgcgt 258

                                                                       
Query: 181 gaaggagttggcaatcaaacgaataaccaagctgaatatcgaggtttaattttaggactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaaggagttggcaatcaaacgaataaccaagctgaatatcgaggtttaattttaggactg 318

                   
Query: 241 aaacatgc 248
           ||||||||
Sbjct: 319 aaacatgc 326


>gnl|LJGI|TC57817 weakly similar to UniRef100_A7Q2I1 Cluster: Chromosome chr1
           scaffold_46, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_46, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (47%)
          Length = 855

 Score =  297 bits (150), Expect = 2e-80
 Identities = 227/252 (90%), Gaps = 3/252 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgagtatccatatggttcaagagcttaccgtgggaattcctcatcaggtggcagg 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||
Sbjct: 86  atggctgagtatccatatggttcaagagcttaccacgggaattcctcatcaggggccagg 145

                                                                       
Query: 61  caatctaatgctaatcgttcttgtacccttgagtttgatggttcttccaaaggaaatcct 120
           |||| |||| |||||| |||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 146 caatataatactaatctttcttgtatccttgagtttgatggtgcttccagaggaaatcct 205

                                                                       
Query: 121 ggatcagctggtgcaggagctgtgctgcgtgctgaagatggaagcaaggtctatc---tg 177
           ||| | |||||||| |||||||||||||||||| ||||||| |||||||||||||   ||
Sbjct: 206 ggaccggctggtgccggagctgtgctgcgtgctaaagatgggagcaaggtctatcggttg 265

                                                                       
Query: 178 cgtgaaggagttggcaatcaaacgaataaccaagctgaatatcgaggtttaattttagga 237
           |||||||||||||||| |||||| || |||   |||||||||||||||||||||||||||
Sbjct: 266 cgtgaaggagttggcattcaaacaaacaactttgctgaatatcgaggtttaattttagga 325

                       
Query: 238 ctgaaacatgct 249
           || |||||||||
Sbjct: 326 ctaaaacatgct 337


>gnl|LJGI|TC76039 weakly similar to UniRef100_A7PMF0 Cluster: Chromosome chr14
           scaffold_21, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (68%)
          Length = 1424

 Score =  190 bits (96), Expect = 3e-48
 Identities = 155/174 (89%), Gaps = 3/174 (1%)
 Strand = Plus / Plus

                                                                       
Query: 78  ttcttgtacccttgagtttgatggttcttccaaaggaaatcctggatcagctggtgcagg 137
           |||||||| |||||||||||||||| |||||||||||||||| ||| | |||||||||||
Sbjct: 652 ttcttgtagccttgagtttgatggtgcttccaaaggaaatcccggacccgctggtgcagg 711

                                                                       
Query: 138 agctgtgctgcgtgctgaagatggaagcaaggtctatc---tgcgtgaaggagttggcaa 194
           |||||||||||||||||| ||||| |||||||||||||   |||||||||||||||||| 
Sbjct: 712 agctgtgctgcgtgctgatgatgggagcaaggtctatcggttgcgtgaaggagttggcac 771

                                                                 
Query: 195 tcaaacgaataaccaagctgaatatcgaggtttaattttaggactgaaacatgc 248
           |||||| |||||    ||||||||| | ||||||||||||||| ||||||||||
Sbjct: 772 tcaaaccaataattttgctgaatataggggtttaattttaggattgaaacatgc 825