Miyakogusa Predicted Gene
- Lj2g3v1014160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1014160.1 Non Chatacterized Hit- tr|I1KCJ9|I1KCJ9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20159
PE,86.26,0,Prenyltrans,Prenyltransferase/squalene oxidase;
Prenyltrans_2,NULL; seg,NULL; no description,NULL; T,CUFF.35887.1
(444 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40280.1 | Symbols: ERA1, ATFTB, WIG | Prenyltransferase fami... 509 e-144
AT3G12070.2 | Symbols: | RAB geranylgeranyl transferase beta su... 134 1e-31
AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl trans... 134 1e-31
AT5G12210.2 | Symbols: | RAB geranylgeranyl transferase beta su... 133 3e-31
AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl trans... 130 2e-30
AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase... 118 8e-27
>AT5G40280.1 | Symbols: ERA1, ATFTB, WIG | Prenyltransferase family
protein | chr5:16101391-16104783 FORWARD LENGTH=482
Length = 482
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/437 (59%), Positives = 317/437 (72%), Gaps = 8/437 (1%)
Query: 14 VSQRDQWMVESQVFQIYQLFATIPPNAQSLMVELQRDKHAEYLSKGLRHLGPAFSVLDAN 73
VSQR+Q++VE+ VF IY F + Q M+E+QRDK +YL KGLR LGP FS LDAN
Sbjct: 48 VSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQFSSLDAN 107
Query: 74 RPWLCYWILHSIALLGESIDDELEDHTIDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNT 133
RPWLCYWILHSIALLGE++DDELE + IDFL RCQ GGY GGPGQ+PHLATTYAAVN
Sbjct: 108 RPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVNA 167
Query: 134 LITLGGQKSLASINRDKLYGFLQRMKQPNGGFRMHNEGEIDVRACYTAISVASILNILDD 193
L+TLGG K+L+SINR+K+ FL+RMK +GGFRMH+ GE+DVRACYTAISVASILNI+DD
Sbjct: 168 LVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMDD 227
Query: 194 ELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLVEWVVF 253
EL Q +GDYILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILI EV+RL+L L+ W V
Sbjct: 228 ELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVH 287
Query: 254 RQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHTIVNKQMVEASQFCTISGESEEKES 313
RQG E GFQGRTNKLVDGCY+FWQ LLQRL++ + + +S + E
Sbjct: 288 RQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAHD 347
Query: 314 LDGTSSHATSHIGHDGSYDFKNIGY------DFINEWRASDPLFHSIALQQYILLCSQDQ 367
D + + + G+ +IN R +F S+ LQ+Y+LLCS+
Sbjct: 348 EDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYIN--RRMQLVFDSLGLQRYVLLCSKIP 405
Query: 368 DGGLRDKPGKRRDHYHTCYCLSGLSVCQYSWSKHPDSPPLPKVVLGPYSNLLEPIHPLFN 427
DGG RDKP K RD YHTCYCLSGLSV Q++W K D+PPL + ++G YSNLLEP+ L N
Sbjct: 406 DGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYSNLLEPVQLLHN 465
Query: 428 VVLERYREAHEFFFAGS 444
+V+++Y EA EFFF +
Sbjct: 466 IVMDQYNEAIEFFFKAA 482
>AT3G12070.2 | Symbols: | RAB geranylgeranyl transferase beta
subunit 2 | chr3:3845420-3847140 REVERSE LENGTH=317
Length = 317
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 5/230 (2%)
Query: 69 VLDANRPWLCYWILHSIALLGESIDDELEDHTIDFLNRCQDPNGGYAGGPGQMPHLATTY 128
V+D R YW L ++ALL + + ED + ++ CQ +GG+AG G PH+ T
Sbjct: 30 VMDHLRMNGAYWGLTTLALL-DKLGSVSEDEVVSWVMTCQHESGGFAGNTGHDPHVLYTL 88
Query: 129 AAVNTLITLGGQKSLASINRDKLYGFLQRMKQPNGGFRMHNEGEIDVRACYTAISVASIL 188
+AV L L ++ +K+ ++ ++ +G F GE+D R Y AI SIL
Sbjct: 89 SAVQILALF---DKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 145
Query: 189 NILDDELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLV 248
LD ++ DYI+SC+ +GG PG+E+H G FC + A+ + G ++R+D L
Sbjct: 146 KCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLG 205
Query: 249 EWVVFRQGKEC-GFQGRTNKLVDGCYSFWQGGAVALLQRLHTIVNKQMVE 297
W+ RQ E G GR KL D CYS+W ++ ++ R+H I ++V+
Sbjct: 206 WWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVK 255
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 54/274 (19%)
Query: 175 VRACYTAISVASILNILDDELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 234
+ Y ++ ++L+ L V ++++CQ GG AG G + H YT + +
Sbjct: 36 MNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGHDPHVLYTLSAVQILA 95
Query: 235 LIGEVNRLDLPRLVEWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHTIVNKQ 294
L ++N LD+ ++ ++ Q ++ F G VD +S+ +++L+ L I K+
Sbjct: 96 LFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILKCLDKINVKK 155
Query: 295 MVEASQFCTISGESEEKESLD---GTSSHATSHIGH--------DGSYDFKNIGYDFINE 343
V+ C ++LD G S A SH G + + + D +
Sbjct: 156 AVDYIVSC---------KNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGW 206
Query: 344 W-----------------RASDPLFHSIALQQYIL----------------LCSQDQD-G 369
W + D + L I+ L SQD D G
Sbjct: 207 WLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNG 266
Query: 370 GLRDKPGKRRDHYHTCYCLSGLSVCQYSWSKHPD 403
G+ D+P D +HT + ++GLS+ +Y K D
Sbjct: 267 GISDRPSYTVDIFHTYFGVAGLSLLEYPGVKTID 300
>AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl
transferase beta subunit 2 | chr3:3845420-3847140
REVERSE LENGTH=317
Length = 317
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 5/230 (2%)
Query: 69 VLDANRPWLCYWILHSIALLGESIDDELEDHTIDFLNRCQDPNGGYAGGPGQMPHLATTY 128
V+D R YW L ++ALL + + ED + ++ CQ +GG+AG G PH+ T
Sbjct: 30 VMDHLRMNGAYWGLTTLALL-DKLGSVSEDEVVSWVMTCQHESGGFAGNTGHDPHVLYTL 88
Query: 129 AAVNTLITLGGQKSLASINRDKLYGFLQRMKQPNGGFRMHNEGEIDVRACYTAISVASIL 188
+AV L L ++ +K+ ++ ++ +G F GE+D R Y AI SIL
Sbjct: 89 SAVQILALF---DKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 145
Query: 189 NILDDELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLV 248
LD ++ DYI+SC+ +GG PG+E+H G FC + A+ + G ++R+D L
Sbjct: 146 KCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLG 205
Query: 249 EWVVFRQGKEC-GFQGRTNKLVDGCYSFWQGGAVALLQRLHTIVNKQMVE 297
W+ RQ E G GR KL D CYS+W ++ ++ R+H I ++V+
Sbjct: 206 WWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVK 255
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 54/274 (19%)
Query: 175 VRACYTAISVASILNILDDELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 234
+ Y ++ ++L+ L V ++++CQ GG AG G + H YT + +
Sbjct: 36 MNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGHDPHVLYTLSAVQILA 95
Query: 235 LIGEVNRLDLPRLVEWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHTIVNKQ 294
L ++N LD+ ++ ++ Q ++ F G VD +S+ +++L+ L I K+
Sbjct: 96 LFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILKCLDKINVKK 155
Query: 295 MVEASQFCTISGESEEKESLD---GTSSHATSHIGH--------DGSYDFKNIGYDFINE 343
V+ C ++LD G S A SH G + + + D +
Sbjct: 156 AVDYIVSC---------KNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGW 206
Query: 344 W-----------------RASDPLFHSIALQQYIL----------------LCSQDQD-G 369
W + D + L I+ L SQD D G
Sbjct: 207 WLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNG 266
Query: 370 GLRDKPGKRRDHYHTCYCLSGLSVCQYSWSKHPD 403
G+ D+P D +HT + ++GLS+ +Y K D
Sbjct: 267 GISDRPSYTVDIFHTYFGVAGLSLLEYPGVKTID 300
>AT5G12210.2 | Symbols: | RAB geranylgeranyl transferase beta
subunit 1 | chr5:3947254-3949595 FORWARD LENGTH=320
Length = 320
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 132/262 (50%), Gaps = 4/262 (1%)
Query: 36 IPPNAQSLMVELQRDKHAEYLSKGLRHLGPAFSVLDANRPWLCYWILHSIALLGESIDDE 95
+ + S MV+L DKH Y+ + V+D R YW L ++ LL + +
Sbjct: 1 MSSTSSSQMVQLVADKHVRYILMAEKKESFESVVMDHLRMNGAYWGLTTLDLL-DKLGCV 59
Query: 96 LEDHTIDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGGQKSLASINRDKLYGFL 155
E+ I +L CQ +GG+AG G PH+ T +AV L + ++ K+ ++
Sbjct: 60 SEEEVISWLMTCQHESGGFAGNTGHDPHILYTLSAVQILALF---DKINILDIGKVSSYV 116
Query: 156 QRMKQPNGGFRMHNEGEIDVRACYTAISVASILNILDDELIQNVGDYILSCQTYEGGIAG 215
+++ +G F GEID R Y AI SIL LD ++ YI+SC+ +GG
Sbjct: 117 AKLQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGC 176
Query: 216 EPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLVEWVVFRQGKECGFQGRTNKLVDGCYSF 275
PG+E+H G FC + A+ + G ++ +D L W+ RQ K G GR KL D CYS+
Sbjct: 177 TPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSW 236
Query: 276 WQGGAVALLQRLHTIVNKQMVE 297
W ++ ++ R+H I ++V+
Sbjct: 237 WVLSSLIMIDRVHWIDKAKLVK 258
>AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl
transferase beta subunit 1 | chr5:3947254-3949595
FORWARD LENGTH=321
Length = 321
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 5/263 (1%)
Query: 36 IPPNAQSLMVELQRDKHAEYLSKGLRHLGPAFSV-LDANRPWLCYWILHSIALLGESIDD 94
+ + S MV+L DKH Y+ + SV +D R YW L ++ LL + +
Sbjct: 1 MSSTSSSQMVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLL-DKLGC 59
Query: 95 ELEDHTIDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGGQKSLASINRDKLYGF 154
E+ I +L CQ +GG+AG G PH+ T +AV L + ++ K+ +
Sbjct: 60 VSEEEVISWLMTCQHESGGFAGNTGHDPHILYTLSAVQILALF---DKINILDIGKVSSY 116
Query: 155 LQRMKQPNGGFRMHNEGEIDVRACYTAISVASILNILDDELIQNVGDYILSCQTYEGGIA 214
+ +++ +G F GEID R Y AI SIL LD ++ YI+SC+ +GG
Sbjct: 117 VAKLQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFG 176
Query: 215 GEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLVEWVVFRQGKECGFQGRTNKLVDGCYS 274
PG+E+H G FC + A+ + G ++ +D L W+ RQ K G GR KL D CYS
Sbjct: 177 CTPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYS 236
Query: 275 FWQGGAVALLQRLHTIVNKQMVE 297
+W ++ ++ R+H I ++V+
Sbjct: 237 WWVLSSLIMIDRVHWIDKAKLVK 259
>AT2G39550.1 | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase
family protein | chr2:16501666-16504144 FORWARD
LENGTH=375
Length = 375
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 37/283 (13%)
Query: 37 PPNAQSLMVELQRDKHAEYLSKGLRHLGPAFSVLDANRPWLCYWILHSIALLG--ESID- 93
PP S ++D+H YL L + + NR L ++I+ + LG + +D
Sbjct: 25 PPVQSSPSANFEKDRHLMYLEMMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDK 84
Query: 94 DELEDHTIDF----LNRCQDPNGGYAGGPG----QMP------------HLATTYAAVNT 133
D + + F NR +G + G G Q P HLA+TY A+
Sbjct: 85 DVVAKWVLSFQAFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTYCALAI 144
Query: 134 LITLGGQKSLASINRDKLYGFLQRMKQPNGGFR-MHNEGEIDVRACYTAISVASILNILD 192
L +G L++I+ L + ++Q +G F +H GE D+R Y A ++ +L+
Sbjct: 145 LKVIG--HDLSTIDSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWS 202
Query: 193 DELIQNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIGEVN-----------R 241
++ +YIL+CQ+Y+GG PGSE+HGG T+C +A++ L+G +
Sbjct: 203 GMDKESAKNYILNCQSYDGGFGLIPGSESHGGATYCAIASLRLMGYIGVDLLSNDSSSSI 262
Query: 242 LDLPRLVEWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALL 284
+D L+ W + RQ + GFQGRTNK D CY+FW G + L+
Sbjct: 263 IDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAVLKLI 305