Miyakogusa Predicted Gene

Lj2g3v0777450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0777450.1 CUFF.35427.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14270.1 | Symbols:  | CAAX amino terminal protease family pr...    90   7e-19

>AT1G14270.1 | Symbols:  | CAAX amino terminal protease family
           protein | chr1:4875099-4877195 REVERSE LENGTH=353
          Length = 353

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 4/99 (4%)

Query: 72  SKTKLQAHQRDFGPDWPILRRWEVPWQWQTFSLTSIACALSLVLTVWLEVNALQSLEAEG 131
            + KLQ    +    WPIL+RWEVPW WQT SLTS ACALS VLT   E+  +  L  + 
Sbjct: 82  GEGKLQGGSSE----WPILQRWEVPWGWQTVSLTSFACALSFVLTGLTEMAVIPFLGIDV 137

Query: 132 DELSSDEEAVIFLVNHGFATAIVLQVLYGITNMYQPLPQ 170
           ++L+ D++A I  ++ G  TA+VL V++ +   + PLP+
Sbjct: 138 EKLTLDDKAEILFLDQGLTTAVVLAVIFTVAKTFDPLPE 176