Miyakogusa Predicted Gene
- Lj2g3v0721190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0721190.1 Non Characterized Hit- tr|I3S828|I3S828_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,43.33,2e-18,SUBFAMILY NOT NAMED,NULL; AMSH,NULL;
seg,NULL,CUFF.35311.1
(403 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC | chr6:3... 608 e-174
Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC | chr8:4... 558 e-159
Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC | chr8:4... 395 e-110
Medtr4g121470.2 | AMSH-like ubiquitin thioesterase-like protein ... 242 5e-64
Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein ... 242 5e-64
Medtr4g121470.3 | AMSH-like ubiquitin thioesterase-like protein ... 230 2e-60
Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC | chr5:1... 82 7e-16
>Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC |
chr6:31340337-31333153 | 20130731
Length = 513
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 305/403 (75%), Positives = 337/403 (83%), Gaps = 4/403 (0%)
Query: 1 MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLR 60
M SSSS+ G INIA SAQKLDVDNRI+LRFY+RIADNILRQADIFRAE+NIIDLYVMLLR
Sbjct: 1 MRSSSSTSGEINIAMSAQKLDVDNRISLRFYYRIADNILRQADIFRAERNIIDLYVMLLR 60
Query: 61 FSSLVTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQN 120
FSSLV+ETIPRHR+YRSSP ++ QKINELNSR+ +QQN
Sbjct: 61 FSSLVSETIPRHREYRSSPSTKKQSLKKRLLISLNELEKLKPLVQQKINELNSRNAHQQN 120
Query: 121 GRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRR 180
GRG HSNNSV FS KKQTL GQIK VR TA+EFVYQGS GQQ++YVRPVEEQVRR
Sbjct: 121 GRGNFHSNNSVD-FSSAKKQTLPGNGQIKAVRETAKEFVYQGSSGQQFTYVRPVEEQVRR 179
Query: 181 LSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSL 240
LSLTLPPPK+ETLSRHSI GPNGLNGQWRPPTT G+RYPTNIDLSPV++P SLQ L
Sbjct: 180 LSLTLPPPKQETLSRHSIFGPNGLNGQWRPPTTGTGIRYPTNIDLSPVELP---SLQRPL 236
Query: 241 EDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPS 300
ED S + KDNSI E +K DL+SI T SEDSQPQ+AQE PSLISFE +T A++E+IRQPS
Sbjct: 237 EDASSSNKDNSIEELHKLDLNSIPTDSEDSQPQRAQESPSLISFEETDTSAQVELIRQPS 296
Query: 301 PPPVLAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSN 360
PPPVLAEV DLVPAVSP VNEAGC T+IPSSDS VRAESPLQLHISTA+M++FMKLAKSN
Sbjct: 297 PPPVLAEVHDLVPAVSPHVNEAGCKTEIPSSDSCVRAESPLQLHISTALMENFMKLAKSN 356
Query: 361 TKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
TKKNLETCG+LAG+LKNRKFYITALIIPKQESTSDSCQ T+EE
Sbjct: 357 TKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTHEE 399
>Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC |
chr8:43936023-43927548 | 20130731
Length = 511
Score = 558 bits (1437), Expect = e-159, Method: Compositional matrix adjust.
Identities = 289/403 (71%), Positives = 317/403 (78%), Gaps = 7/403 (1%)
Query: 1 MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLR 60
MT SS TI+IAA QK+DVDNR +LR Y+RIADNIL+QADIFRAEKNIIDLY+MLLR
Sbjct: 2 MTCSSD---TISIAARTQKVDVDNRFSLRIYYRIADNILKQADIFRAEKNIIDLYIMLLR 58
Query: 61 FSSLVTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQN 120
+SSLV+ETIPRHRDYR+SPQS+ QKINELNSR YQ +
Sbjct: 59 YSSLVSETIPRHRDYRTSPQSKKELLRKKLLTSVIELEKLKPLAQQKINELNSRKSYQHS 118
Query: 121 GRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRR 180
GR SN S FSPVKKQT+ASY +IK VR TA EFVY+GS QQY VRPVE+ ++R
Sbjct: 119 GRDTFRSNYSTG-FSPVKKQTMASYDEIKAVRQTAGEFVYRGSKAQQYPCVRPVEDSMKR 177
Query: 181 LSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSL 240
LSLTLPPPKEETLSRHSILGPNGL G W+PPT+DKGVRYPT IDLSPV+IP SL SL
Sbjct: 178 LSLTLPPPKEETLSRHSILGPNGLKGPWQPPTSDKGVRYPTIIDLSPVEIP---SLHQSL 234
Query: 241 EDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPS 300
ED S NKKDNSI+E K D++S LTQSED Q + A E PSLISFE E A I+VIRQPS
Sbjct: 235 EDGSQNKKDNSISEHNKLDVESTLTQSEDCQVKHADETPSLISFEETEDFAPIKVIRQPS 294
Query: 301 PPPVLAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSN 360
PPPVLAEVQDLVP VSP V+EAGC T+ P SDSF RAESPLQLHISTAMM SFMKLAKSN
Sbjct: 295 PPPVLAEVQDLVPTVSPHVDEAGCKTETPLSDSFGRAESPLQLHISTAMMGSFMKLAKSN 354
Query: 361 TKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
T KNLETCGILAG LKNRKFYITALIIPKQE+TS SCQATNEE
Sbjct: 355 TDKNLETCGILAGSLKNRKFYITALIIPKQEATSSSCQATNEE 397
>Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC |
chr8:43935969-43927719 | 20130731
Length = 373
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/262 (77%), Positives = 219/262 (83%), Gaps = 3/262 (1%)
Query: 142 LASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLTLPPPKEETLSRHSILGP 201
+ASY +IK VR TA EFVY+GS QQY VRPVE+ ++RLSLTLPPPKEETLSRHSILGP
Sbjct: 1 MASYDEIKAVRQTAGEFVYRGSKAQQYPCVRPVEDSMKRLSLTLPPPKEETLSRHSILGP 60
Query: 202 NGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDESLNKKDNSIAEPYKSDLD 261
NGL G W+PPT+DKGVRYPT IDLSPV+IP SL SLED S NKKDNSI+E K D++
Sbjct: 61 NGLKGPWQPPTSDKGVRYPTIIDLSPVEIP---SLHQSLEDGSQNKKDNSISEHNKLDVE 117
Query: 262 SILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAEVQDLVPAVSPQVNE 321
S LTQSED Q + A E PSLISFE E A I+VIRQPSPPPVLAEVQDLVP VSP V+E
Sbjct: 118 STLTQSEDCQVKHADETPSLISFEETEDFAPIKVIRQPSPPPVLAEVQDLVPTVSPHVDE 177
Query: 322 AGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFY 381
AGC T+ P SDSF RAESPLQLHISTAMM SFMKLAKSNT KNLETCGILAG LKNRKFY
Sbjct: 178 AGCKTETPLSDSFGRAESPLQLHISTAMMGSFMKLAKSNTDKNLETCGILAGSLKNRKFY 237
Query: 382 ITALIIPKQESTSDSCQATNEE 403
ITALIIPKQE+TS SCQATNEE
Sbjct: 238 ITALIIPKQEATSSSCQATNEE 259
>Medtr4g121470.2 | AMSH-like ubiquitin thioesterase-like protein |
HC | chr4:50216958-50211331 | 20130731
Length = 427
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 221/406 (54%), Gaps = 26/406 (6%)
Query: 10 TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2 TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61
Query: 70 PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
P HRDY+++ + +++++LN + ++NG
Sbjct: 62 PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121
Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
S NS + V K+ +S K + ++ + Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179
Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
+P P +ETLSRHS LGPNGL GQW P+ + V+YP++ DL TH+ S
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232
Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
L + P S +DSIL+ + E S + E E + I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292
Query: 304 VLAEV---QDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPL---QLHISTAMMDSFMKLA 357
VLA+V + +P G P+ S P LHI MM+ F++LA
Sbjct: 293 VLAQVHPERACIPHSKVADPRPG-----PAKSSHDSGHGPTTFQHLHIPVKMMEDFLRLA 347
Query: 358 KSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
NT+KNLETCG+LAG LKNR F IT LIIPKQESTSDSCQ NEE
Sbjct: 348 SVNTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDSCQTLNEE 393
>Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein |
HC | chr4:50216958-50208834 | 20130731
Length = 509
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 220/406 (54%), Gaps = 26/406 (6%)
Query: 10 TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2 TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61
Query: 70 PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
P HRDY+++ + +++++LN + ++NG
Sbjct: 62 PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121
Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
S NS + V K+ +S K + ++ + Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179
Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
+P P +ETLSRHS LGPNGL GQW P+ + V+YP++ DL TH+ S
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232
Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
L + P S +DSIL+ + E S + E E + I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292
Query: 304 VLAEVQ---DLVPAVSPQVNEAGCLTDIPSSDSFVRAESPL---QLHISTAMMDSFMKLA 357
VLA+V +P G P+ S P LHI MM+ F++LA
Sbjct: 293 VLAQVHPERACIPHSKVADPRPG-----PAKSSHDSGHGPTTFQHLHIPVKMMEDFLRLA 347
Query: 358 KSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
NT+KNLETCG+LAG LKNR F IT LIIPKQESTSDSCQ NEE
Sbjct: 348 SVNTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDSCQTLNEE 393
>Medtr4g121470.3 | AMSH-like ubiquitin thioesterase-like protein |
HC | chr4:50216958-50213068 | 20130731
Length = 391
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 215/404 (53%), Gaps = 36/404 (8%)
Query: 10 TINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETI 69
TI++ + A K+DVDNR+ LR+Y+RIAD++L+QA ++R E N++DLY+MLLRF SLV+ETI
Sbjct: 2 TIDLDSMAPKVDVDNRLPLRYYYRIADSLLKQARVYREENNVVDLYIMLLRFISLVSETI 61
Query: 70 PRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVY----QQNGRGKI 125
P HRDY+++ + +++++LN + ++NG
Sbjct: 62 PYHRDYQATLANERAAYKKRSRLVLDELESLKPEFKRRLDKLNESRIQAPLPEENGFDMA 121
Query: 126 --HSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSL 183
S NS + V K+ +S K + ++ + Y+ + P+++Q ++LSL
Sbjct: 122 LQSSANSSLEWPAVNKRYNSSM-DFKQSTGLGSQSSWKPNNTLSYNSM-PIDKQFQKLSL 179
Query: 184 TLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDE 243
+P P +ETLSRHS LGPNGL GQW P+ + V+YP++ DL TH+ S
Sbjct: 180 NVPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDL-------THAKDSSTVKY 232
Query: 244 SLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPP 303
L + P S +DSIL+ + E S + E E + I+QP PPP
Sbjct: 233 DLAGIKDGDQGPLTSTMDSILSLDDGRWLHPTAESCSPVVTEPREDFLQSLNIKQPLPPP 292
Query: 304 VLAEVQDLVPAVSPQVNEAGCLTDI--------PSSDSFVRAESPL---QLHISTAMMDS 352
VLA+V E C+ P+ S P LHI MM+
Sbjct: 293 VLAQVHP----------ERACIPHSKVADPRPGPAKSSHDSGHGPTTFQHLHIPVKMMED 342
Query: 353 FMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDS 396
F++LA NT+KNLETCG+LAG LKNR F IT LIIPKQESTSDS
Sbjct: 343 FLRLASVNTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDS 386
>Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC |
chr5:14819002-14814603 | 20130731
Length = 235
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 343 LHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNE 402
+HIS +M+ F+ LAK NT+K+LETCGIL L+ Y+T LIIPKQES S+SC ATNE
Sbjct: 61 VHISMRLMEDFLDLAKENTEKDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCNATNE 120
Query: 403 E 403
E
Sbjct: 121 E 121