Miyakogusa Predicted Gene

Lj2g3v0721190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0721190.1 Non Chatacterized Hit- tr|I3S828|I3S828_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,43.33,2e-18,SUBFAMILY NOT NAMED,NULL; AMSH,NULL;
seg,NULL,CUFF.35311.1
         (403 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 ...   387   e-108
AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3 ...   242   3e-64
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...    81   1e-15
AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3 ...    81   1e-15

>AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
           domain of STAM 1 | chr1:18043925-18047427 REVERSE
           LENGTH=507
          Length = 507

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/399 (53%), Positives = 262/399 (65%), Gaps = 7/399 (1%)

Query: 5   SSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSL 64
            SS  TI+IA SA+++ VDNRI+L+FYFRIADNIL+QA+IFRAEKN+IDLYVMLLRFSSL
Sbjct: 2   GSSFETIDIATSARRIGVDNRISLKFYFRIADNILKQANIFRAEKNVIDLYVMLLRFSSL 61

Query: 65  VTETIPRHRDYRSSPQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNSRHVYQQNGRGK 124
             ETIP HRDYR+S +S                        Q+I+EL  +   + N +  
Sbjct: 62  ALETIPSHRDYRTSLKSNKEYLRMRLLDVLTELEKLKPVVQQRIDELYPKLKPRYNVQA- 120

Query: 125 IHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLT 184
            H  N    +S   K +  SY   K   P      Y GS GQQ+    P+EE+ R++S+ 
Sbjct: 121 -HPANGSLGWSSAVKPSFNSYDHAKVRNPPGHNSGYMGSRGQQFLNAAPLEERFRKMSVN 179

Query: 185 LPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDES 244
             P  EETLS+HSILGP GL+ QW+PP  D  V+YP+NID SPV IP   S Q  L D  
Sbjct: 180 FRP-NEETLSKHSILGPGGLSAQWQPPKYDTKVQYPSNIDFSPVVIP---SFQQ-LVDSK 234

Query: 245 LNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPV 304
               + S  EP K  ++  +  +E  Q    +E  S+ISFE  E+     +IRQPSPPPV
Sbjct: 235 PMITNGSNDEPEKPIVEPSVASNEKIQKNYTEELSSMISFEEPESVNENNLIRQPSPPPV 294

Query: 305 LAEVQDLVPAVSPQVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSNTKKN 364
           LAEVQDLVPA+ P+V E  C+ +    D  +R+ESPL+LHI+T+MMD+FM+LAKSNTKKN
Sbjct: 295 LAEVQDLVPALCPEVREPECMIENSLPDESLRSESPLELHIATSMMDTFMRLAKSNTKKN 354

Query: 365 LETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
           LETCGILAG LKNRKFYITALIIPKQESTSDSCQATNEE
Sbjct: 355 LETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEE 393


>AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3
           domain of STAM 3 | chr4:9138053-9141422 REVERSE
           LENGTH=507
          Length = 507

 Score =  242 bits (618), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/397 (39%), Positives = 222/397 (55%), Gaps = 10/397 (2%)

Query: 11  INIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETIP 70
           I++   A++++VDNRI LR Y+RIADN+LRQA I+R EKN++DLY+MLLR+SSL++ETIP
Sbjct: 3   IDLNKVAREIEVDNRIPLRNYYRIADNLLRQASIYREEKNVVDLYIMLLRYSSLISETIP 62

Query: 71  RHRDYRSS-PQSRXXXXXXXXXXXXXXXXXXXXXXXQKINELNS-RHVYQQNGRG-KIHS 127
            HRDY++S PQ R                       Q +++LN      +Q+G    + S
Sbjct: 63  FHRDYQASLPQERLGSRKRLRAVINELESLKPEFN-QLVDKLNRVEDESRQDGSDLPVVS 121

Query: 128 NNSVAAFSPVKKQTLASYGQIKTVRPTAREFVYQGSGGQQYSYVRPVEEQVRRLSLTLPP 187
            +S A   P   +   S   I    PT++      +     S    +++Q ++LS    P
Sbjct: 122 YSSDAVEWPPAHKASYSRPDINKPLPTSQPSWTYNNNLTSSSNRTQIDQQFQKLSFDFLP 181

Query: 188 PKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSLEDESLNK 247
           P + TLSRHS LGPNGL  Q   P ++  V+YP+N D    D         S    SLN 
Sbjct: 182 PNQATLSRHSFLGPNGLKRQMVAPKSEIKVQYPSNTDWGSADNSGLIEAGPSSSSASLNG 241

Query: 248 KDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAE 307
               +     S L+S+L+  +    + ++   S    +A E P +   ++QPSPPPVLA+
Sbjct: 242 DSQEV-----STLNSVLSLDDGRWQRHSEAVNSQFISDATEDPFQFVGMKQPSPPPVLAQ 296

Query: 308 VQDLVPAVSP-QVNEAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSNTKKNLE 366
           V   +  + P +V +      IPS +    + S   LH+   +MD F++LA+SNT++NLE
Sbjct: 297 VHQELAQICPSKVADPRPGPAIPSLEGKEGSNSYQHLHVPVRIMDDFLRLARSNTERNLE 356

Query: 367 TCGILAGVLKNRKFYITALIIPKQESTSDSCQATNEE 403
           TCG+LAG LKNR F+IT LIIPKQESTSDSCQ  NEE
Sbjct: 357 TCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEE 393


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query: 343 LHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNE 402
           +HIS  +++ F +LA+ NT+K+LETCG LA  L+   FY+T LIIPKQESTS+SCQA NE
Sbjct: 49  VHISERLLEDFTELARENTEKDLETCGTLAAFLERGIFYVTTLIIPKQESTSNSCQAMNE 108


>AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=222
          Length = 222

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 47/60 (78%)

Query: 343 LHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQATNE 402
           +HIS  +++ F +LA+ NT+K+LETCG LA  L+   FY+T LIIPKQESTS+SCQA NE
Sbjct: 49  VHISERLLEDFTELARENTEKDLETCGTLAAFLERGIFYVTTLIIPKQESTSNSCQAMNE 108