Miyakogusa Predicted Gene

Lj2g3v0484940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0484940.1 tr|A8HND3|A8HND3_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_190138 PE=4
SV=1,54.55,3e-19,zf-CDGSH,Iron sulphur-containing domain, CDGSH-type;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.34630.1
         (118 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0050s0180.1 | CDGSH iron-sulfur domain protein | HC | scaff...   147   2e-36

>Medtr0050s0180.1 | CDGSH iron-sulfur domain protein | HC |
           scaffold0050:68704-71014 | 20130731
          Length = 173

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 89/121 (73%), Gaps = 7/121 (5%)

Query: 1   MESVLSHVGAGFCHG--ITPLKRGITATHFNPSSFSGGVDCRKPRRVVLVKAEAEGVG-I 57
           M SVLS VG   C    ++  K GIT T+FN  SF  G    K  R V+VKAE  GV  I
Sbjct: 57  MASVLSQVGVVLCQKPCLSERKNGITGTNFNTGSFGIG----KKARSVVVKAETGGVSSI 112

Query: 58  NPDIRKTEAKVVDSVVITELAKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLK 117
           NPDIRK E KVVD+VV++E++K +T YCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLK
Sbjct: 113 NPDIRKNEDKVVDAVVLSEVSKAVTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLK 172

Query: 118 K 118
           K
Sbjct: 173 K 173