Miyakogusa Predicted Gene

Lj2g3v0484940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0484940.1 tr|A8HND3|A8HND3_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_190138 PE=4
SV=1,54.55,3e-19,zf-CDGSH,Iron sulphur-containing domain, CDGSH-type;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.34630.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding | chr...   131   8e-32

>AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding |
           chr5:21009645-21010227 FORWARD LENGTH=108
          Length = 108

 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 3/91 (3%)

Query: 28  FNPSSFSGGVDCRKPRRVVLVKAEAEGVGINPDIRKTEAKVVDSVVITELAKPLTAYCRC 87
           F P   +GG   RK +R+V+V+AE  G GINP+IRK E KVVDSVV+TEL+K +T YCRC
Sbjct: 20  FKP--VTGGEVGRKQQRMVVVRAEGGG-GINPEIRKNEDKVVDSVVVTELSKNITPYCRC 76

Query: 88  WRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 118
           WRSGTFPLCDGSHVKHNKA GDNVGPLLLKK
Sbjct: 77  WRSGTFPLCDGSHVKHNKANGDNVGPLLLKK 107