Miyakogusa Predicted Gene
- Lj2g3v0286920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0286920.1 tr|G7KLZ3|G7KLZ3_MEDTR Flap endonuclease GEN-like
protein OS=Medicago truncatula GN=MTR_6g055360
PE=,85.22,0,XPG_I,XPG/RAD2 endonuclease; XPG_N,XPG N-terminal;
XPGRADSUPER,DNA repair protein (XPGC)/yeast Rad; ,CUFF.34495.1
(407 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g055360.1 | flap endonuclease GEN-like protein | HC | chr6... 735 0.0
Medtr7g076290.1 | flap endonuclease GEN-like protein | HC | chr7... 139 7e-33
Medtr7g034405.1 | DNA repair UVH3-like protein | HC | chr7:12893... 107 2e-23
Medtr1g085130.1 | flap endonuclease 1-A | HC | chr1:38000945-380... 59 8e-09
Medtr1g085130.4 | flap endonuclease 1-A | HC | chr1:38000945-380... 59 9e-09
Medtr1g085130.3 | flap endonuclease 1-A | HC | chr1:38000945-380... 59 1e-08
Medtr1g085130.2 | flap endonuclease 1-A | HC | chr1:38001007-380... 57 3e-08
Medtr8g087940.1 | 5'-3' exonuclease family protein | HC | chr8:3... 52 8e-07
Medtr8g087940.2 | 5'-3' exonuclease family protein | HC | chr8:3... 52 9e-07
>Medtr6g055360.1 | flap endonuclease GEN-like protein | HC |
chr6:19794054-19802253 | 20130731
Length = 571
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/407 (85%), Positives = 374/407 (91%)
Query: 1 MGVKNLWDVLESCKKTVPLHLLQNKRVCVDLSCWMVQLHNVSKSHACVKEKVHLRGLFHR 60
MGVKNLWD+LESCKKTVPLH LQNKRVCVDLSCWMVQL NV KSHAC+KEKVHLRGLFHR
Sbjct: 1 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVCKSHACLKEKVHLRGLFHR 60
Query: 61 LRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDETNLPKVTSLRRNMGSEFSC 120
LRALIALNC+VV V+DGSIPAIKLSTYRRRLN GKEV Q ETNL K TSLRRN+GSEFSC
Sbjct: 61 LRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQKETNLQKTTSLRRNLGSEFSC 120
Query: 121 MIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCFSLDSDIFLFGARTVYRDICL 180
MI EAK LGMALG+SCLNGIEEAEAQCALLN E LCDGCFS DSDIFLFGARTVYRDICL
Sbjct: 121 MISEAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICL 180
Query: 181 GDGGYAVCYEMADIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDEFI 240
GDGGY VCYEMADIERKLGFGRDSLI LSLLLGSDYY GVHGLGP+SACQIVKSIGD+F+
Sbjct: 181 GDGGYVVCYEMADIERKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVKSIGDKFV 240
Query: 241 LKKIASEGLGWVKKRRGGGNNLHRDEKVLEVINAYMKPKCHSADSDVVHRALANYPFQRI 300
LKK ASEGLGWVKKR+GG N + RD+ +L+VI+AY+KPKCHSADS+ + +ALA YPFQR
Sbjct: 241 LKKFASEGLGWVKKRKGGQNKIGRDDTILQVIDAYLKPKCHSADSEFLLKALATYPFQRT 300
Query: 301 QLQQICAEFFEWPSDRTDGYILPSIAERDLRRFANLRLTSSDLGLNLPLHEIPVKCPVSE 360
+L ICA FEWPS+RTDGYILP IAERDLRRFANLRLTSS+LGLNLPLHEIPVKCPVSE
Sbjct: 301 KLHHICAVSFEWPSERTDGYILPCIAERDLRRFANLRLTSSELGLNLPLHEIPVKCPVSE 360
Query: 361 IVKSRKVQGKECYEVTWKDMDGLETSIVPADLIESACPEKILEFEEK 407
I+KSRK QG+ECYEV+WKDMDGLETSIVPADLIESACPEKI EFEEK
Sbjct: 361 IIKSRKAQGRECYEVSWKDMDGLETSIVPADLIESACPEKISEFEEK 407
>Medtr7g076290.1 | flap endonuclease GEN-like protein | HC |
chr7:28709723-28704777 | 20130731
Length = 612
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 1 MGVK-NLWDVLESCKKTVPLHLLQNKRVCVDLSCWMVQLHNVSKSHACVKEKVHLRGLFH 59
MGV N W++L+ + L+NKRV +DLS W+VQ +N K+H +K HLR F
Sbjct: 1 MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTHV---KKPHLRLTFF 57
Query: 60 RLRALIA-LNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDETNLP---KVTSLRRNMG 115
R L + V V DG+ +K R + + T+LP + S RN
Sbjct: 58 RTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGI--ESTSLPVAEEGVSAGRN-- 113
Query: 116 SEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCFSLDSDIFLFGARTVY 175
S FS ++E L LGI L EAEA CA LN E D C + DSD FLFGA+ +
Sbjct: 114 STFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCII 173
Query: 176 RDICLGDGGYAVCYEMADIERKLGFGRDSLIALSLLLGSDY-YQGVHGLGPESACQIVKS 234
+ CY M+DIE LG R LIA+SLL+G+D+ GV G+G +SA + V++
Sbjct: 174 KSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQA 233
Query: 235 IGDEFILKKIASEGLG 250
G++ IL ++ G G
Sbjct: 234 FGEDDILNRLHEIGKG 249
>Medtr7g034405.1 | DNA repair UVH3-like protein | HC |
chr7:12893024-12880077 | 20130731
Length = 1673
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 44/252 (17%)
Query: 110 LRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCFSLDSDIFLF 169
L RN S S + E + L G+ + EAEAQCA L L L DG + DSD+FLF
Sbjct: 1017 LERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVFLF 1076
Query: 170 GARTVYRDICLGDGGYAVCYEMADIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESAC 229
GAR+VY++I D Y Y M D+E++LG R+ LI ++LLLGSDY +GV G+G +A
Sbjct: 1077 GARSVYKNI-FDDRKYVETYFMEDVEKELGLNREKLIRMALLLGSDYTEGVSGIGIVNAI 1135
Query: 230 QIVKSIGDEFIL--------------------KKIASEG----------------LGWVK 253
+++ + +E L K ++ +G ++
Sbjct: 1136 EVLNAFPEEDGLLKFRQWVESPDPTILGRLDAKSVSKKGSKLEEKESPDYIQETKQTFMD 1195
Query: 254 KRRGGGNNLHRDEKVLE--VINAYMKPKCHSADSDVVHRALANYPFQRIQLQQICAEFFE 311
K R N H VI+AY+ P+ D A ++ L+++C E F
Sbjct: 1196 KHRNVSKNWHIPSSFPSETVISAYISPQV-----DKSTEPFAWGKPDQLVLRKMCWEKFG 1250
Query: 312 WPSDRTDGYILP 323
W S + D +LP
Sbjct: 1251 WSSQKADELLLP 1262
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDVLESCKKTVPLHLLQNKRVCVDLSCWMVQ-LHNVSKSHACVKEKVHLRGLFH 59
MGV LW++L + V + L K + VD S WMVQ + + + HL G F
Sbjct: 1 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFIKAMRDEKGEMVRNAHLLGFFR 60
Query: 60 RLRALIALNCSVVLVADGSIPAIKLSTY--RRR 90
R+ L+ L V V DG PA+K T RRR
Sbjct: 61 RICKLLFLRTKPVFVFDGGTPALKRRTVIARRR 93
>Medtr1g085130.1 | flap endonuclease 1-A | HC |
chr1:38000945-38008617 | 20130731
Length = 384
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 106/270 (39%), Gaps = 26/270 (9%)
Query: 1 MGVKNLWDVLESCKKTVPLHLLQNK-------RVCVDLSCWMVQLHNV---SKSHACVKE 50
MG+K L +L P + +NK ++ VD S + Q V S + E
Sbjct: 1 MGIKGLTKLLAD---NAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNE 57
Query: 51 ----KVHLRGLFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDET---- 102
HL+G+F R L+ V V DG P +K ++RL+ E T
Sbjct: 58 AGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALE 117
Query: 103 --NLPKVTSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCF 160
N + + + K L +G+ + EAEAQCA L
Sbjct: 118 ADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVA 177
Query: 161 SLDSDIFLFGARTVYRDICLGDGGY--AVCYEMADIERKLGFGRDSLIALSLLLGSDYYQ 218
S D D FGA R + + +++A I +L D I L +L G DY
Sbjct: 178 SEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCD 237
Query: 219 GVHGLGPESACQIVKSIGD-EFILKKIASE 247
+ G+G +A ++++ G E IL+ I+ E
Sbjct: 238 NIRGIGGMTALKLIRQHGSIEKILENISKE 267
>Medtr1g085130.4 | flap endonuclease 1-A | HC |
chr1:38000945-38008113 | 20130731
Length = 383
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 106/270 (39%), Gaps = 26/270 (9%)
Query: 1 MGVKNLWDVLESCKKTVPLHLLQNK-------RVCVDLSCWMVQLHNV---SKSHACVKE 50
MG+K L +L P + +NK ++ VD S + Q V S + E
Sbjct: 1 MGIKGLTKLLAD---NAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNE 57
Query: 51 ----KVHLRGLFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDET---- 102
HL+G+F R L+ V V DG P +K ++RL+ E T
Sbjct: 58 AGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALE 117
Query: 103 --NLPKVTSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCF 160
N + + + K L +G+ + EAEAQCA L
Sbjct: 118 ADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVA 177
Query: 161 SLDSDIFLFGARTVYRDICLGDGGY--AVCYEMADIERKLGFGRDSLIALSLLLGSDYYQ 218
S D D FGA R + + +++A I +L D I L +L G DY
Sbjct: 178 SEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCD 237
Query: 219 GVHGLGPESACQIVKSIGD-EFILKKIASE 247
+ G+G +A ++++ G E IL+ I+ E
Sbjct: 238 NIRGIGGMTALKLIRQHGSIEKILENISKE 267
>Medtr1g085130.3 | flap endonuclease 1-A | HC |
chr1:38000945-38008609 | 20130731
Length = 416
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 106/270 (39%), Gaps = 26/270 (9%)
Query: 1 MGVKNLWDVLESCKKTVPLHLLQNK-------RVCVDLSCWMVQLHNV---SKSHACVKE 50
MG+K L +L P + +NK ++ VD S + Q V S + E
Sbjct: 1 MGIKGLTKLLAD---NAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNE 57
Query: 51 ----KVHLRGLFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDET---- 102
HL+G+F R L+ V V DG P +K ++RL+ E T
Sbjct: 58 AGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALE 117
Query: 103 --NLPKVTSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCF 160
N + + + K L +G+ + EAEAQCA L
Sbjct: 118 ADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVA 177
Query: 161 SLDSDIFLFGARTVYRDICLGDGGY--AVCYEMADIERKLGFGRDSLIALSLLLGSDYYQ 218
S D D FGA R + + +++A I +L D I L +L G DY
Sbjct: 178 SEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCD 237
Query: 219 GVHGLGPESACQIVKSIGD-EFILKKIASE 247
+ G+G +A ++++ G E IL+ I+ E
Sbjct: 238 NIRGIGGMTALKLIRQHGSIEKILENISKE 267
>Medtr1g085130.2 | flap endonuclease 1-A | HC |
chr1:38001007-38008524 | 20130731
Length = 369
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 9/204 (4%)
Query: 53 HLRGLFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDET------NLPK 106
HL+G+F R L+ V V DG P +K ++RL+ E T N
Sbjct: 49 HLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKED 108
Query: 107 VTSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNLELLCDGCFSLDSDI 166
+ + + K L +G+ + EAEAQCA L S D D
Sbjct: 109 IEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDS 168
Query: 167 FLFGARTVYRDICLGDGGY--AVCYEMADIERKLGFGRDSLIALSLLLGSDYYQGVHGLG 224
FGA R + + +++A I +L D I L +L G DY + G+G
Sbjct: 169 LTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIG 228
Query: 225 PESACQIVKSIGD-EFILKKIASE 247
+A ++++ G E IL+ I+ E
Sbjct: 229 GMTALKLIRQHGSIEKILENISKE 252
>Medtr8g087940.1 | 5'-3' exonuclease family protein | HC |
chr8:36390120-36384780 | 20130731
Length = 735
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 107/271 (39%), Gaps = 30/271 (11%)
Query: 1 MGVKNLWDVLESCKKTVPLHL--LQNKRVCVDLSCWMVQLHNVSKSHAC--VKEKVHLRG 56
MG+ L +L+S +P+H+ V +D W+ + + C + H+
Sbjct: 1 MGIHGLLPLLKSI--MIPIHIKDFHGCSVAIDTYSWLHKGALSCSTDLCKGIPTTRHIEY 58
Query: 57 LFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDETNLPKVTSLRRNMGS 116
HR+ L +LV DG + +K +R KE NL + N S
Sbjct: 59 CMHRVNLLRHYGVKPILVFDGGLLPMKGDQENKRARSRKE------NLERAVEHEANGNS 112
Query: 117 E--FSCMIKE-------AKALGMAL---GISCLNGIEEAEAQCALLNLELLCDGCFSLDS 164
+ C K A+ L L + + EA+AQ L + D + DS
Sbjct: 113 TAAYECYQKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDS 172
Query: 165 DIFLFG-ARTVYRDICLGDGGYAVCYEMADIERKL---GFGRDSLIALSLLLGSDYYQGV 220
D+ FG R +++ G G Y M ++L GF + L+ + +L G DY Q +
Sbjct: 173 DLIPFGCPRIIFKMDKFGQG-VQFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSL 231
Query: 221 HGLGPESACQIVKSIGD-EFILKKIASEGLG 250
G+G + A +K + +LK + G+
Sbjct: 232 PGMGLKKAHASIKRFKSYDKVLKHLKYNGVS 262
>Medtr8g087940.2 | 5'-3' exonuclease family protein | HC |
chr8:36390120-36384591 | 20130731
Length = 721
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 107/271 (39%), Gaps = 30/271 (11%)
Query: 1 MGVKNLWDVLESCKKTVPLHL--LQNKRVCVDLSCWMVQLHNVSKSHAC--VKEKVHLRG 56
MG+ L +L+S +P+H+ V +D W+ + + C + H+
Sbjct: 1 MGIHGLLPLLKSI--MIPIHIKDFHGCSVAIDTYSWLHKGALSCSTDLCKGIPTTRHIEY 58
Query: 57 LFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNVGKEVMQDETNLPKVTSLRRNMGS 116
HR+ L +LV DG + +K +R KE NL + N S
Sbjct: 59 CMHRVNLLRHYGVKPILVFDGGLLPMKGDQENKRARSRKE------NLERAVEHEANGNS 112
Query: 117 E--FSCMIKE-------AKALGMAL---GISCLNGIEEAEAQCALLNLELLCDGCFSLDS 164
+ C K A+ L L + + EA+AQ L + D + DS
Sbjct: 113 TAAYECYQKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDS 172
Query: 165 DIFLFG-ARTVYRDICLGDGGYAVCYEMADIERKL---GFGRDSLIALSLLLGSDYYQGV 220
D+ FG R +++ G G Y M ++L GF + L+ + +L G DY Q +
Sbjct: 173 DLIPFGCPRIIFKMDKFGQG-VQFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSL 231
Query: 221 HGLGPESACQIVKSIGD-EFILKKIASEGLG 250
G+G + A +K + +LK + G+
Sbjct: 232 PGMGLKKAHASIKRFKSYDKVLKHLKYNGVS 262