Miyakogusa Predicted Gene

Lj2g3v0146560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0146560.1 Non Characterized Hit- tr|I1L2U5|I1L2U5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,84.72,0,gyrA: DNA
gyrase, A subunit,DNA gyrase, subunit A; DNA GYRASE SUBUNIT A,NULL;
DNA TOPOISOMERASE/GYRA,CUFF.34286.1
         (914 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031690.1 | DNA gyrase subunit A | HC | chr1:11104096-1108...  1469   0.0  
Medtr3g031040.1 | DNA topoisomerase IV subunit A | HC | chr3:987...    75   3e-13
Medtr3g085840.1 | DNA topoisomerase IV subunit A | HC | chr3:388...    71   5e-12

>Medtr1g031690.1 | DNA gyrase subunit A | HC |
           chr1:11104096-11086066 | 20130731
          Length = 938

 Score = 1469 bits (3803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/887 (81%), Positives = 779/887 (87%), Gaps = 9/887 (1%)

Query: 37  PFVSLTRPSPLRLASSELRFLXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXX 87
           PF   TR S LR  +S+LRFL                                       
Sbjct: 24  PFTPTTRLSFLRRTTSDLRFLSASTRRRPSTSIKAAAASVRRDEPERDGNGSVTVVDNGS 83

Query: 88  XXXXXRSEGRILTKELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 147
                RSEGRI+  ELHKEATEAYM+YAMSVLLGRALPDVRDGLKPVHRRILFAMHELGL
Sbjct: 84  SDVVKRSEGRIVLTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGL 143

Query: 148 SSKKSFKKCARVVGEVLGKFHPHGDSAVYDSLVRMAQDFSLRYPLIQGHGNFGSIDADPA 207
           SSKK FKKCARVVGEVLGKFHPHGD+AVYDS+VRMAQDFSLR PL+ GHGNFGSIDADP 
Sbjct: 144 SSKKPFKKCARVVGEVLGKFHPHGDTAVYDSMVRMAQDFSLRSPLVNGHGNFGSIDADPP 203

Query: 208 AAMRYTESRXXXXXXXXXXXXXXXXXXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAV 267
           AAMRYTE R                   FVPNFDNSQKEPS+LPARLP LLLNG+SGIAV
Sbjct: 204 AAMRYTECRLEELAEAVMLADLDQDTVDFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAV 263

Query: 268 GMATNIPPHNLGELVDVLRVLIHNPEATLQEMLEYMPGPDFPTGGVIMGNLGILEAYRTX 327
           GMATNIPPHNLGE+VDVLRV+IHNPEATLQE+LEYMPGPDFPTGG+IMGNLGILEAYRT 
Sbjct: 264 GMATNIPPHNLGEVVDVLRVMIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTG 323

Query: 328 XXXXXXXXKTEFELLDSKTKRTAIIIKEIPYQTNKAALVEKIAELVENKSLDGISDIRDE 387
                   KT+ ELLDSK+KR+AIIIKEIPYQTNK+ALVEKIA+LVENKSLDGISDIRDE
Sbjct: 324 RGRVVVRGKTDVELLDSKSKRSAIIIKEIPYQTNKSALVEKIADLVENKSLDGISDIRDE 383

Query: 388 SDRSGMRIVIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNGQPKQTGLKELLQEFL 447
           SDRSGMR+VIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNG+PKQ GLKE+LQ FL
Sbjct: 384 SDRSGMRVVIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNGKPKQMGLKEILQAFL 443

Query: 448 DFRCSVIERRARFKLSKAQERRHIVEGILIGFDNLDRVIHIIREASSNSIATAGLRNEFS 507
           DFRCSV+ERRARF+LSKAQ+RRHIVEGIL+GFDNLD VI IIREASSNSIA AGL+NEF+
Sbjct: 444 DFRCSVVERRARFQLSKAQQRRHIVEGILVGFDNLDGVIRIIREASSNSIAAAGLQNEFN 503

Query: 508 LSEKQAEALMDISLRRLTRRESGNFLAESKSLMEQISKLEELLSSRSNILEVIEQEAIEL 567
           +SEKQAEAL+D+SLRRLT RES NF+AE+KSL EQISKLEELLSSR NILEVIEQEAI+L
Sbjct: 504 ISEKQAEALLDMSLRRLTLRESDNFVAENKSLSEQISKLEELLSSRKNILEVIEQEAIDL 563

Query: 568 KNKFADPRRSMLEDTDNGQLEDIDVIPNDEIILALSEKGYVKRMKPNTFNLQNRGTIGKS 627
           KNKFA PRRS+LEDTD+GQLEDIDVIPN+E++L LSEKGY+KRMKP+TFNLQ+RGTIGKS
Sbjct: 564 KNKFASPRRSILEDTDDGQLEDIDVIPNEEMLLTLSEKGYLKRMKPSTFNLQHRGTIGKS 623

Query: 628 VGKLKVNDSMSDFLVCRAHDHVLYFSDKGTVYSARAYKIPECSRTAAGTPLIQILSLSDG 687
           VGKLK+NDSMSDF+VCRAHD VLYFSDKGTVYSARAYKIPECSRTA+GTPL+QILSLSDG
Sbjct: 624 VGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKIPECSRTASGTPLVQILSLSDG 683

Query: 688 ERITSIIPVSEFAEDQFLVMLTMQGYIKRVSLNSFSSIRSTGIIAIQLVPGDELKWVHLC 747
           ERITSIIPVSEF +DQFL+MLTMQGYIKRV LNSFSSIRS+GIIAIQLVPGDELKWV  C
Sbjct: 684 ERITSIIPVSEFTDDQFLLMLTMQGYIKRVPLNSFSSIRSSGIIAIQLVPGDELKWVRCC 743

Query: 748 TNDDFVAMASHNGMVILSLCSKIRTLGRNTRGAVAMRLREGDRMASMDIIPAAMWNNLES 807
           TNDDFVAMASHNGMVILSLCSKIRTLGRNTRGA+AMRL+EGDRMAS+DIIPAAMWNNLE+
Sbjct: 744 TNDDFVAMASHNGMVILSLCSKIRTLGRNTRGALAMRLKEGDRMASVDIIPAAMWNNLET 803

Query: 808 LSKSPGNNGKSQNGPWLLFVSESGYGKRVPLSSFRMSSLNRIGLIGYKFSAEDRLAAVFV 867
           +SK P +NGKS +GPWLLF+SESG+GKRVPLS FRMSSLNR+GLIGYKFSAEDRLAAVFV
Sbjct: 804 ISKLPESNGKSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFV 863

Query: 868 VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRL 914
           VGF+LAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRL
Sbjct: 864 VGFTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRL 910



 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 35/248 (14%)

Query: 595 NDEIILALSEKGYVKRMKPNTFN-LQNRGTIGKSVGKLKVNDSMSDFLVCRAHDHVLYFS 653
           +D+ +L L+ +GY+KR+  N+F+ +++ G I     +L   D +     C   D V   S
Sbjct: 697 DDQFLLMLTMQGYIKRVPLNSFSSIRSSGIIAI---QLVPGDELKWVRCCTNDDFVAMAS 753

Query: 654 DKGTVYSARAYKIPECSRTAAGTPLIQILSLSDGERITS--IIP---------VSEFAED 702
             G V  +   KI    R   G   ++   L +G+R+ S  IIP         +S+  E 
Sbjct: 754 HNGMVILSLCSKIRTLGRNTRGALAMR---LKEGDRMASVDIIPAAMWNNLETISKLPES 810

Query: 703 Q-------FLVMLTMQGYIKRVSLNSF--SSIRSTGIIAIQLVPGDELKWVHLC------ 747
                   +L+ ++  G+ KRV L+ F  SS+   G+I  +    D L  V +       
Sbjct: 811 NGKSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFTLAE 870

Query: 748 --TNDDFVAMASHNGMVILSLCSKIRTLGRNTRGAVAMRLREGDRMASMDIIPAAMWNNL 805
              +D+ V + S +G V       I    R  RG + MRL    ++ +  +I A      
Sbjct: 871 DGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISATECEPE 930

Query: 806 ESLSKSPG 813
           E L+ + G
Sbjct: 931 EELAIAQG 938


>Medtr3g031040.1 | DNA topoisomerase IV subunit A | HC |
            chr3:9877949-9869222 | 20130731
          Length = 1504

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 53/383 (13%)

Query: 120  LGRALPDVRDGLKPVHRRILFAMHELGLSSKKSFKKCARVVGEVLG------KFHPHGDS 173
            L R++P + DGLKP  R+ILF       S KK+  K  +V G+ +G       +H HG+ 
Sbjct: 687  LQRSIPSMVDGLKPGQRKILFC------SFKKNLSKEVKV-GQFIGYVSEHSAYH-HGEQ 738

Query: 174  AVYDSLVRMAQDF--SLRYPLIQGHGNFGS--IDADPAAAMRYTESRXXXXXXXXXXXXX 229
            ++  +++ MAQDF  S    L+  +G FG+  +     A+ RY  ++             
Sbjct: 739  SLASTIIGMAQDFVGSNNINLLTPNGQFGTRNLGGKDHASSRYIYTQLNTVTRSLFHADD 798

Query: 230  XXXXXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAVGMATNIPPHNLGELVDVLRVLI 289
                     N D    EP+     +P++L+NG+ GI  G ++ IP +N  E++  +R L+
Sbjct: 799  DKLLEYL--NEDGRSIEPNWYIPIIPLVLVNGSEGIGTGWSSFIPNYNPREIIANVRRLL 856

Query: 290  HNPEATLQEMLEYMPGPDFPTGGVIMGNLGILEAYRTXXXXXXXXXKTEFELLDSKTKRT 349
            ++     +EM+        P      G  G +E                 E +D  T R 
Sbjct: 857  ND-----EEMV--------PMDPWYKGFRGTIEK---SAKEGGYIVNGSVEEIDDITFR- 899

Query: 350  AIIIKEIP---YQTNKAALVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGSDPL 406
               I E+P   +  +    +E   E   N     I D +   D + + I + +K      
Sbjct: 900  ---ITELPIRKWTQDYKTFLELTTEGAPNVKDPLIEDFKQNGDDAIVDIEVRMKAEKVAA 956

Query: 407  IVLNNLYRLTSLQSTFSCNMVGILNGQPKQTGL---KELLQEFLDFRCSVIERRARFKLS 463
            I+   L++   L ST S + + + + + K       +++L+EF   R    E+R ++ L+
Sbjct: 957  IMQEGLFKKFKLTSTISTSNMHLFDAEGKIKKFDTPEQILEEFYPLRLEYYEKRKKYILA 1016

Query: 464  KAQERRHIVEGILIGFDNLDRVI 486
                    +E +L+  DN  R I
Sbjct: 1017 N-------LERLLLILDNKVRFI 1032


>Medtr3g085840.1 | DNA topoisomerase IV subunit A | HC |
           chr3:38841641-38834996 | 20130731
          Length = 1345

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 165/385 (42%), Gaps = 58/385 (15%)

Query: 120 LGRALPDVRDGLKPVHRRILFAMHELGLSSKKSFK--KCARVVGEV-LGKFHPHGDSAVY 176
           L R++P + DGLKP  R+ILF   +     KK +K  K ++ +G V L   + HG+ ++ 
Sbjct: 635 LQRSIPSMVDGLKPGQRKILFCSFK-----KKLYKEIKVSQFIGYVSLHSAYHHGEQSLA 689

Query: 177 DSLVRMAQDF--SLRYPLIQGHGNFGS--IDADPAAAMRYTESRXXXXXXXXXXXXXXXX 232
           ++++ MAQDF       L+  +G FG+  +     A+ +Y  +                 
Sbjct: 690 NTIIGMAQDFVGGNNINLLNPNGQFGTRNLGGKDHASPKYIYTELNIVTRFLFHEDDDKL 749

Query: 233 XXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAVGMATNIPPHNLGELVDVLRVLIHNP 292
                 N +    EP+     +P++L+NG+  I  G ++ IP +N  E++  +R L++  
Sbjct: 750 LKYL--NEEGKSIEPNWYIPIIPLVLVNGSEEIGTGWSSYIPNYNPREIIANVRRLLNE- 806

Query: 293 EATLQEMLEYMPGPDFPTGGVIMGNLGILE------AYRTXXXXXXXXXKTEFELLDSKT 346
               +EM+        P      G  G +E       YR                +D +T
Sbjct: 807 ----EEMV--------PMDPWYRGFRGTIEKSMKQGGYRVNGSMVK---------IDEQT 845

Query: 347 KRTAIIIKEIP---YQTNKAALVEKIAELVENKSLDGISDIRDESDRSGMRIVIELK--R 401
            R    I E+P   +  +    +E I E   N +   I D R   D + + I +++K  +
Sbjct: 846 FR----ITELPIRKWTEDYKQFLESITEGAPNVNDPFIEDFRQNGDDAIIDIEVKMKPDK 901

Query: 402 GSDPLIVLNNLYRLTSLQSTFSCNMVGILNGQPKQTGLKELLQEFLDFRCSVIERRARFK 461
            +  +  L   ++LTS+ ST + ++        K    +++L+EF   R    +RR ++ 
Sbjct: 902 VASVMQGLFKKFKLTSIVSTSNMHLFDAEGKIKKYDTPEQILEEFYPLRMDYYQRRKKYM 961

Query: 462 LSKAQERRHIVEGILIGFDNLDRVI 486
           L+        +E +L+  DN  R I
Sbjct: 962 LAN-------LERLLLILDNKVRFI 979