Miyakogusa Predicted Gene

Lj2g3v0146560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0146560.1 Non Chatacterized Hit- tr|I1L2U5|I1L2U5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,84.72,0,gyrA: DNA
gyrase, A subunit,DNA gyrase, subunit A; DNA GYRASE SUBUNIT A,NULL;
DNA TOPOISOMERASE/GYRA,CUFF.34286.1
         (914 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10690.1 | Symbols: GYRA | DNA GYRASE A | chr3:3339612-334624...  1237   0.0  
AT3G23890.2 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:...    67   5e-11
AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:...    67   6e-11

>AT3G10690.1 | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243
           REVERSE LENGTH=950
          Length = 950

 Score = 1237 bits (3200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/820 (74%), Positives = 704/820 (85%), Gaps = 1/820 (0%)

Query: 95  EGRILTKELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKSFK 154
           E RI+  ELHKEATE+YMSYA+SVLLGRALPDVRDGLKPVHRRILFAMHELG+SSKK +K
Sbjct: 98  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 155 KCARVVGEVLGKFHPHGDSAVYDSLVRMAQDFSLRYPLIQGHGNFGSIDADPAAAMRYTE 214
           KCARVVGEVLGKFHPHGD+AVYDSLVRMAQ FSLR PLIQGHGNFGSIDADP AAMRYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 215 SRXXXXXXXXXXXXXXXXXXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAVGMATNIP 274
            R                   FV NFDNSQKEP+VLPARLP LLLNGASGIAVGMATNIP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 275 PHNLGELVDVLRVLIHNPEATLQEMLEYMPGPDFPTGGVIMGNLGILEAYRTXXXXXXXX 334
           PHNLGELVDVL  LIHNPEATLQE+LEYMP PDFPTGG+IMGNLG+L+AYRT        
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVR 337

Query: 335 XKTEFELLDSKTKRTAIIIKEIPYQTNKAALVEKIAELVENKSLDGISDIRDESDRSGMR 394
            K E ELLD KTKR A+II EIPYQTNKA LV+KIAELVENK+L+GISDIRDESDR+GMR
Sbjct: 338 GKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMR 397

Query: 395 IVIELKRGSDPLIVLNNLYRLTSLQSTFSCNMVGILNGQPKQTGLKELLQEFLDFRCSVI 454
           +VIELKRG DP +VLNNLYR T+LQS+FSCNMVGI +G+PK  GLKELLQ F+DFRCSV+
Sbjct: 398 VVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVV 457

Query: 455 ERRARFKLSKAQERRHIVEGILIGFDNLDRVIHIIREASSNSIATAGLRNEFSLSEKQAE 514
           ERRARFKLS AQ+R+HI+EGI++G DN+D VI +I +ASS+S ATA L++E+ LSEKQAE
Sbjct: 458 ERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAE 517

Query: 515 ALMDISLRRLTRRESGNFLAESKSLMEQISKLEELLSSRSNILEVIEQEAIELKNKFADP 574
           A+++I+LRRLT  E   F  ES SL EQI+KLE+LLS+R+NIL++IEQEAIELK++F+ P
Sbjct: 518 AILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP 577

Query: 575 RRSMLEDTDNGQLEDIDVIPNDEIILALSEKGYVKRMKPNTFNLQNRGTIGKSVGKLKVN 634
           RRSMLED+D+G LEDIDVIPN+E+++A+SEKGYVKRMK +TFNLQ+RGTIGKSVGKL+V+
Sbjct: 578 RRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVD 637

Query: 635 DSMSDFLVCRAHDHVLYFSDKGTVYSARAYKIPECSRTAAGTPLIQILSLSDGERITSII 694
           D+MSDFLVC AHDHVL+FSD+G VYS RAYKIPECSR AAGTPL+QILS+S+GER+TSI+
Sbjct: 638 DAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIV 697

Query: 695 PVSEFAEDQFLVMLTMQGYIKRVSLNSFSSIRSTGIIAIQLVPGDELKWVHLCTNDDFVA 754
           PVSEFAED++L+MLT+ G IK+VSL  FS IRSTGIIAIQL  GDELKWV  C++DD VA
Sbjct: 698 PVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVA 757

Query: 755 MASHNGMVILSLCSKIRTLGRNTRGAVAMRLREGDRMASMDIIPAAMWNNLESLSKSPGN 814
           MAS NGMV LS C  +RTL RNT+G  AMRL+  D++ASMDIIPA++  ++E  S+   +
Sbjct: 758 MASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSED-AS 816

Query: 815 NGKSQNGPWLLFVSESGYGKRVPLSSFRMSSLNRIGLIGYKFSAEDRLAAVFVVGFSLAE 874
             K   GPWLLFV E+GYGKRVPLSSFR S LNR+GL GYKF+ +DRLAAVFVVG+SLAE
Sbjct: 817 LVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAE 876

Query: 875 DGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRL 914
           DGESDEQVVLVSQSGTVNRIKVRDISIQSR ARGVILMRL
Sbjct: 877 DGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRL 916


>AT3G23890.2 | Symbols: TOPII, ATTOPII | topoisomerase II |
           chr3:8624931-8631106 FORWARD LENGTH=1438
          Length = 1438

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 26/184 (14%)

Query: 120 LGRALPDVRDGLKPVHRRILFAMHELGLSSKKSFKKCAR-------VVGEV--LGKFHPH 170
           L R++P + DGLKP  R+ILF           +FKK AR       +VG V  L  +H H
Sbjct: 700 LQRSIPSMVDGLKPGQRKILFV----------AFKKIARKEMKVAQLVGYVSLLSAYH-H 748

Query: 171 GDSAVYDSLVRMAQDF--SLRYPLIQGHGNFGSIDA--DPAAAMRYTESRXXXXXXXXXX 226
           G+ ++  +++ MAQD+  S    L+  +G FG+  +    +A+ RY  ++          
Sbjct: 749 GEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFP 808

Query: 227 XXXXXXXXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAVGMATNIPPHNLGELVDVLR 286
                       N D  + EP+     +P +L+NGA GI  G +T IP +N  E+V  +R
Sbjct: 809 KDDDLLLD--YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVR 866

Query: 287 VLIH 290
            L++
Sbjct: 867 RLLN 870


>AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II |
           chr3:8624931-8631106 FORWARD LENGTH=1473
          Length = 1473

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 26/184 (14%)

Query: 120 LGRALPDVRDGLKPVHRRILFAMHELGLSSKKSFKKCAR-------VVGEV--LGKFHPH 170
           L R++P + DGLKP  R+ILF           +FKK AR       +VG V  L  +H H
Sbjct: 700 LQRSIPSMVDGLKPGQRKILFV----------AFKKIARKEMKVAQLVGYVSLLSAYH-H 748

Query: 171 GDSAVYDSLVRMAQDF--SLRYPLIQGHGNFGSIDA--DPAAAMRYTESRXXXXXXXXXX 226
           G+ ++  +++ MAQD+  S    L+  +G FG+  +    +A+ RY  ++          
Sbjct: 749 GEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFP 808

Query: 227 XXXXXXXXXFVPNFDNSQKEPSVLPARLPILLLNGASGIAVGMATNIPPHNLGELVDVLR 286
                       N D  + EP+     +P +L+NGA GI  G +T IP +N  E+V  +R
Sbjct: 809 KDDDLLLD--YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVR 866

Query: 287 VLIH 290
            L++
Sbjct: 867 RLLN 870