Miyakogusa Predicted Gene

Lj2g3v0027990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0027990.1 Non Chatacterized Hit- tr|E1Z7D2|E1Z7D2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.17,0.0000000002, ,CUFF.34087.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   220   3e-58
AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   216   6e-57

>AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:8428577-8429017
           FORWARD LENGTH=146
          Length = 146

 Score =  220 bits (560), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 125/147 (85%), Gaps = 5/147 (3%)

Query: 1   MEVLGKS-MVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICD 59
           MEV GKS MV   ANVI+LS+ILGRD     HKCDWKC+NE+VCGNMYRCKLTGLTH+CD
Sbjct: 1   MEVFGKSPMVVTSANVIYLSAILGRDCDG--HKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCNQRILYDNHSSLCRASGQVFPLTPTEEQAVRGVRRKLDADNS-PTDSCGFK-RRREA 117
           KNCNQRILYDNHSSLCRASG++FPL+  EEQAV+GVRRKLDA  S P++SC FK RRR+A
Sbjct: 59  KNCNQRILYDNHSSLCRASGRIFPLSSVEEQAVKGVRRKLDAAESHPSESCSFKRRRRDA 118

Query: 118 QLHPSPFEKSFSAVNPICSQVADGMDM 144
           Q H SPFE+SF+AV+PICS   DGM++
Sbjct: 119 QFHASPFERSFTAVSPICSPAGDGMEL 145


>AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to
           55 proteins in 14 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18368201-18368644 FORWARD LENGTH=147
          Length = 147

 Score =  216 bits (549), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 127/149 (85%), Gaps = 6/149 (4%)

Query: 1   MEVLGKS-MVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICD 59
           MEV GKS +V G ANVI+LS+ILG +GP+  HKCDWKC+NE+VCGNMYRCKLTGLTH+CD
Sbjct: 1   MEVFGKSHVVVGSANVIYLSAILGHEGPN--HKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCNQRILYDNHSSLCRASGQVFPLTPTEEQAVRGVRRKLD--ADNSPTDSCGFKRRREA 117
           KNCNQRILYDNH+SLCRASG++FPL+  EEQAV+GVRRKLD  +   P++SC  +RRR+A
Sbjct: 59  KNCNQRILYDNHNSLCRASGRIFPLSLVEEQAVKGVRRKLDDESQQQPSESCVKRRRRDA 118

Query: 118 QLHPSPFEKSFSAVNPICSQV-ADGMDMS 145
           Q H SPFE+SF+AV+P CSQ   DGM+++
Sbjct: 119 QFHSSPFERSFAAVSPFCSQAGGDGMEIN 147