Miyakogusa Predicted Gene

Lj1g3v4969960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4969960.1 Non Characterized Hit- tr|I3SJJ0|I3SJJ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.37,0,Ribosomal_L29,Ribosomal protein L29; L29: ribosomal
protein L29,Ribosomal protein L29; coiled-coil,N,CUFF.33758.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g067490.1 | 60S ribosomal L35-like protein | HC | chr1:291...   219   5e-58
Medtr4g062410.1 | 60S ribosomal L35-like protein | HC | chr4:231...   214   2e-56
Medtr1g115545.1 | 60S ribosomal L35-like protein | HC | chr1:522...   209   3e-55
Medtr7g080090.1 | 60S ribosomal L35-like protein | HC | chr7:304...   199   5e-52
Medtr4g072410.1 | 60S ribosomal L35-like protein | HC | chr4:274...   198   9e-52
Medtr1g105880.1 | 60S ribosomal protein L35 | HC | chr1:47805416...   118   2e-27
Medtr5g045540.1 | 60S ribosomal L35-like protein, putative | LC ...    60   5e-10
Medtr5g045550.1 | hypothetical protein | LC | chr5:19986897-1998...    49   8e-07

>Medtr1g067490.1 | 60S ribosomal L35-like protein | HC |
           chr1:29111688-29109043 | 20130731
          Length = 122

 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/119 (94%), Positives = 118/119 (99%)

Query: 4   IKVYELRNKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
           IK++ELR+KTKA+LLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ
Sbjct: 3   IKMFELRSKTKADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 62

Query: 64  KQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAVK 122
           KQKAALRE YKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE+YFPLRKYA+K
Sbjct: 63  KQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPLRKYAIK 121


>Medtr4g062410.1 | 60S ribosomal L35-like protein | HC |
           chr4:23174266-23171645 | 20130731
          Length = 123

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/122 (89%), Positives = 118/122 (96%)

Query: 1   MARIKVYELRNKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MA +KVYELR KTK +LL+QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRL+IAQVLTV
Sbjct: 1   MAGVKVYELRQKTKQDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTV 60

Query: 61  ISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYA 120
           ISQKQK ALREAYK+KKYLPLDLRPKKTRAIRRRLTKHQ+SLKTEREKKKE+YFP+RKYA
Sbjct: 61  ISQKQKTALREAYKSKKYLPLDLRPKKTRAIRRRLTKHQSSLKTEREKKKEIYFPVRKYA 120

Query: 121 VK 122
           +K
Sbjct: 121 IK 122


>Medtr1g115545.1 | 60S ribosomal L35-like protein | HC |
           chr1:52226656-52228831 | 20130731
          Length = 121

 Score =  209 bits (533), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/119 (89%), Positives = 114/119 (95%)

Query: 4   IKVYELRNKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
           +KV+ELR K K +LL+QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ
Sbjct: 2   VKVHELRQKNKTDLLAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 61

Query: 64  KQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAVK 122
           KQKAALRE YKNKKYLPLDLRPKKTRAIRRRLTKHQ+SLKTEREKKKE YFP+RKYA+K
Sbjct: 62  KQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQSSLKTEREKKKETYFPMRKYAIK 120


>Medtr7g080090.1 | 60S ribosomal L35-like protein | HC |
           chr7:30434335-30433931 | 20130731
          Length = 123

 Score =  199 bits (506), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 112/122 (91%)

Query: 1   MARIKVYELRNKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKV+ELR KTKA+LL+QLKDLKAELALLRVAK T  APN LSKIK VRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKADLLAQLKDLKAELALLRVAKATRAAPNNLSKIKEVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYA 120
           ISQK+KAALRE YKNKKYLP+DLRPKKTRA+RRRLTKHQ+SLKTE EKKKE YF +RKYA
Sbjct: 61  ISQKRKAALREVYKNKKYLPIDLRPKKTRAVRRRLTKHQSSLKTEMEKKKETYFTMRKYA 120

Query: 121 VK 122
           +K
Sbjct: 121 IK 122


>Medtr4g072410.1 | 60S ribosomal L35-like protein | HC |
           chr4:27454555-27457529 | 20130731
          Length = 121

 Score =  198 bits (504), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 111/118 (94%)

Query: 5   KVYELRNKTKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
           K YELR KTK +LL+QLKDLKAELALLRVAKVTGGAPNK+SKIKVVRL+IAQVLTVISQ 
Sbjct: 3   KTYELRQKTKPDLLNQLKDLKAELALLRVAKVTGGAPNKISKIKVVRLNIAQVLTVISQN 62

Query: 65  QKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAVK 122
           QK ALR AYK+KKYLPLDLRPKKTRAIRRRLTK+Q SLKT+REKKKE+YFPLRKYA+K
Sbjct: 63  QKTALRAAYKHKKYLPLDLRPKKTRAIRRRLTKNQLSLKTDREKKKEIYFPLRKYAIK 120


>Medtr1g105880.1 | 60S ribosomal protein L35 | HC |
           chr1:47805416-47806017 | 20130731
          Length = 83

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 11/88 (12%)

Query: 13  TKAELLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREA 72
           TK++LL+QLKDLKAEL LL VAKVTGGAPNKLSK           +  ISQKQKAALREA
Sbjct: 4   TKSDLLAQLKDLKAELILLCVAKVTGGAPNKLSK-----------MLSISQKQKAALREA 52

Query: 73  YKNKKYLPLDLRPKKTRAIRRRLTKHQA 100
           YKN+KYLPLDL PKK RAI RRLTKHQ 
Sbjct: 53  YKNRKYLPLDLHPKKIRAICRRLTKHQG 80


>Medtr5g045540.1 | 60S ribosomal L35-like protein, putative | LC |
           chr5:19985753-19985495 | 20130731
          Length = 73

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 30/35 (85%)

Query: 67  AALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQAS 101
           AALRE YK KKYLPLDL PKK RAI RRLTKHQ+S
Sbjct: 2   AALREVYKKKKYLPLDLHPKKIRAICRRLTKHQSS 36


>Medtr5g045550.1 | hypothetical protein | LC |
          chr5:19986897-19986616 | 20130731
          Length = 65

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 6  VYELRNKTKAELLSQLKDLKAELALLRVAKVTGG 39
          V  L+ +TKA+LL+QLKDLKAELALL VAKVTGG
Sbjct: 18 VIPLKVETKADLLAQLKDLKAELALLCVAKVTGG 51