Miyakogusa Predicted Gene
- Lj1g3v4107110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4107110.1 Non Chatacterized Hit- tr|K4BGI4|K4BGI4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,29.34,0.000000000000001,PPR,Pentatricopeptide repeat;
OS03G0849800 PROTEIN (FRAGMENT),NULL; FAMILY NOT NAMED,NULL; PPR:
pent,CUFF.31955.1
(180 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 156 9e-39
AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 80 9e-16
AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 9e-13
AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 65 2e-11
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su... 65 3e-11
AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 64 5e-11
AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 64 6e-11
AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 64 6e-11
AT4G33170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 1e-10
AT4G39530.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 3e-10
AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 4e-10
AT3G03580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 61 4e-10
AT2G13600.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 4e-10
AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 5e-10
AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 5e-10
AT3G09040.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 7e-10
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor 19 ... 60 8e-10
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup... 59 1e-09
AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 1e-09
AT4G35130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 1e-09
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li... 59 1e-09
AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 59 1e-09
AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 2e-09
AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 59 2e-09
AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 2e-09
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su... 58 3e-09
AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 3e-09
AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 4e-09
AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 4e-09
AT4G21065.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 6e-09
AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 8e-09
AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 56 1e-08
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li... 56 1e-08
AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 56 2e-08
AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 2e-08
AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 2e-08
AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 2e-08
AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 3e-08
AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 3e-08
AT1G17630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 3e-08
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re... 55 4e-08
AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 4e-08
AT1G69350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 4e-08
AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 4e-08
AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 5e-08
AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 54 5e-08
AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 5e-08
AT3G15130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 5e-08
AT3G26540.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 7e-08
AT3G28640.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 7e-08
AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 8e-08
AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 8e-08
AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 1e-07
AT1G56570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 1e-07
AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 2e-07
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li... 52 2e-07
AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 2e-07
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li... 52 2e-07
AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 2e-07
AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 3e-07
AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 4e-07
AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 4e-07
AT5G13230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 5e-07
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su... 50 6e-07
AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 7e-07
AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 7e-07
AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 8e-07
AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 8e-07
AT1G18485.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 8e-07
AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 9e-07
AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 9e-07
AT3G28660.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT4G02750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT1G16480.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 1e-06
AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 1e-06
AT1G16480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 1e-06
AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 1e-06
AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 2e-06
AT2G41080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT5G16860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 3e-06
AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 3e-06
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 4e-06
AT3G15930.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 4e-06
AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 48 4e-06
AT1G74630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 4e-06
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-... 48 4e-06
AT2G04860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 5e-06
AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 5e-06
AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 5e-06
AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 6e-06
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D... 47 6e-06
AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 7e-06
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 47 7e-06
AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 8e-06
AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 47 8e-06
AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 47 9e-06
>AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:20520789-20522980 REVERSE
LENGTH=701
Length = 701
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 13/157 (8%)
Query: 34 NVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHK 93
VG STYDALV C+ L+SIR +KRV+ +M+SNGFEP+ Y MNR+L MHV+CG+++DA +
Sbjct: 120 KVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARR 179
Query: 94 LFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSS 153
LF ++PER+ S+ ++I V+ GNYVEAFE F MWEE +DC + TFA M+RAS + S
Sbjct: 180 LFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGS 239
Query: 154 SW---------FWLNIVANT----GLVDFYSKLGRMK 177
+ L +V NT GL+D YSK G ++
Sbjct: 240 IYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIE 276
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ ++ GL SI K++ + G + + ++ M+ +CG + DA F M
Sbjct: 226 TFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECM 285
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDC----RSRTFATMVRASFCVSS- 153
PE+ V+W +I G EA LC+ + D T + M+R S ++
Sbjct: 286 PEKTTVAWNNVIAGYALHGYSEEA----LCLLYDMRDSGVSIDQFTLSIMIRISTKLAKL 341
Query: 154 ------------SWFWLNIVANTGLVDFYSKLGRM 176
+ F IVANT LVDFYSK GR+
Sbjct: 342 ELTKQAHASLIRNGFESEIVANTALVDFYSKWGRV 376
>AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4519647-4521533 FORWARD
LENGTH=628
Length = 628
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 9 SWLCVLGTKRQWTCFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGF 68
S LC G ++ E+ +G YDAL+N C+ R++R +RV +MI +
Sbjct: 28 SQLCSNGRLQE----ALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRY 83
Query: 69 EPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLC 128
P Y R+L + +C + DA K+ +MPE++ VSW +I R +G+ EA F
Sbjct: 84 LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE 143
Query: 129 MWEEFNDCRSRTFATMVRASFCVSSSWFWL---------------NIVANTGLVDFYSKL 173
M TFAT++ + C+ +S L +I + L+D Y+K
Sbjct: 144 MMRSDGKPNEFTFATVLTS--CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA 201
Query: 174 GRMKHC 179
G++K
Sbjct: 202 GQIKEA 207
>AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:17498580-17500655 REVERSE
LENGTH=691
Length = 691
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%)
Query: 27 ELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCG 86
+L G A STY L+ C R++ K+V ++ ++GF P + NR+L M+ +CG
Sbjct: 75 QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134
Query: 87 LMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEE 132
++DA K+F +MP RD SW ++ + G EA + F M E+
Sbjct: 135 SLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK 180
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F EL G T+ ++N C L + K+V YM GF+P + + ++ M+ +
Sbjct: 307 FSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTK 366
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG + A + P+ D VSW +LIG +G EA + F + + TF +
Sbjct: 367 CGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNV 426
Query: 145 VRA 147
+ A
Sbjct: 427 LSA 429
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 51 RSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLI 110
+ IR K + +++ G + D + ++ M+ +CG + +A +F + E+D VSW ++I
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMI 291
Query: 111 GRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLNI---------- 160
R S + E F F + TFA ++ A +++ +
Sbjct: 292 DRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFD 351
Query: 161 ---VANTGLVDFYSKLGRMK 177
A++ LVD Y+K G ++
Sbjct: 352 PYSFASSSLVDMYTKCGNIE 371
>AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17651912-17654032 FORWARD
LENGTH=706
Length = 706
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ + C GLR ++ K + ++I GF L N + M+ CG M D LF +M
Sbjct: 211 TFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENM 270
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
ERD VSW +LI G V+A E F+ M +TFA+M A
Sbjct: 271 SERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSA 319
>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:1181560-1183452 FORWARD
LENGTH=630
Length = 630
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 37 GSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFA 96
+TY L+ C+ R++ + ++ NG P ++ +N +++M+V+ L+ DAH+LF
Sbjct: 61 SATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFD 120
Query: 97 DMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVS---- 152
MP+R+ +SW T+I + +A E + M + T+++++R+ +S
Sbjct: 121 QMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM 180
Query: 153 ------SSWFWLNIVANTGLVDFYSKLGR 175
++ + L+D ++KLG
Sbjct: 181 LHCGIIKEGLESDVFVRSALIDVFAKLGE 209
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 38 STYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFAD 97
+T +++ C GL + + +++ ++ DL N ++ M+ +CG + DA ++F
Sbjct: 261 ATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQ 318
Query: 98 MPERDAVSWMTLIGRLVDSGNYVEAFEQF 126
M ERD ++W T+I L +G EA + F
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLF 347
>AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:883782-885611 FORWARD
LENGTH=609
Length = 609
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 37 GSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFA 96
GST+ ++ C LR ++ K + +I+NG ++ + +L M+ +CG + +A ++F
Sbjct: 265 GSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFN 324
Query: 97 DMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWF 156
M ++++VSW L+G +G + +A E F M E+ C F T+++A +++
Sbjct: 325 GMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDLYC----FGTVLKACAGLAAVRL 380
Query: 157 -------------WLNIVANTGLVDFYSKLG 174
+ N++ + L+D Y K G
Sbjct: 381 GKEIHGQYVRRGCFGNVIVESALIDLYGKSG 411
>AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:21414935-21417616 REVERSE
LENGTH=893
Length = 893
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F E+ + T+ ++V C GLR I RV +I GFE + + + ++ +
Sbjct: 112 FEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSK 171
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG +A +LF+ + D +SW +I LV + + EA + + M + TF +
Sbjct: 172 CGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKL 231
Query: 145 VRASFCVSSSW------------FWLNIVANTGLVDFYSKLGRMK 177
+ AS + + LN+V T LVDFYS+ +M+
Sbjct: 232 LGASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKME 276
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 2 GYVVRLRSWLCVLGTKRQWTCFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFN 61
G+V LR+ V GT F E+ TY A+++ C +RS+ K++ +
Sbjct: 299 GFVRNLRAKEAV-GT--------FLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHS 349
Query: 62 YMISNGFEPDLYTMNRVLHMHVRCGLM-LDAHKLFADMPERDAVSWMTLIGRLVDSGNYV 120
I GFE N ++ M+++C ++A ++F M + VSW TLI LVD G
Sbjct: 350 QTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQ 409
Query: 121 EAFEQFLCMWEEFNDCRSRTFATMVRA 147
+ F + M + + T + ++RA
Sbjct: 410 DCFGLLMEMVKREVEPNVVTLSGVLRA 436
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 30 GDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLML 89
GD + + ++ L ++ K + Y + +GF +N ++ M+ +CG +
Sbjct: 521 GDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLE 580
Query: 90 DAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
DA K+F ++ D VSW L+ L +G A F M + + S TF ++ A
Sbjct: 581 DAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSA 638
>AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22638691-22641237 REVERSE
LENGTH=783
Length = 783
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 7 LRSWLCVLGTKRQWTCFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISN 66
L S C G+K + FWE++ D T +++ C L + +++ + I
Sbjct: 96 LISGYCKSGSKVEAFNL-FWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKT 154
Query: 67 GFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMP-ERDAVSWMTLIGRLVDSGNYVEAFEQ 125
GF+ D+ +N +L M+ +C + +A LF M E++ V+W +++ +G +A E
Sbjct: 155 GFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIEC 214
Query: 126 FLCMWEEFNDCRSRTFATM-------------VRASFCVSSSWFWLNIVANTGLVDFYSK 172
F + E N TF ++ V+ C+ S F NI + L+D Y+K
Sbjct: 215 FRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAK 274
Query: 173 LGRMK 177
M+
Sbjct: 275 CREME 279
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 22 CFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHM 81
CF+ EG+ +N T+ +++ C + + R +V ++ +GF+ ++Y + ++ M
Sbjct: 214 CFRDLRREGNQSN--QYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDM 271
Query: 82 HVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWE---EFND--- 135
+ +C M A L M D VSW ++I V G EA F M E + +D
Sbjct: 272 YAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTI 331
Query: 136 -------CRSRTFATMVRASFC-VSSSWFWLNIVANTGLVDFYSKLGRM 176
SRT + ++ C + + + + N LVD Y+K G M
Sbjct: 332 PSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIM 380
>AT4G33170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15995701-15998673 REVERSE
LENGTH=990
Length = 990
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C L +I K+V Y I +G++ DL+ + +L M+V+CG M A F +P D V+W
Sbjct: 527 CGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAW 586
Query: 107 MTLIGRLVDSGNYVEAFEQFLCM------WEEFNDCRSRTFATMVRASFCVSSSWFWLNI 160
T+I +++G AF F M +EF T AT+ +AS C+++ I
Sbjct: 587 TTMISGCIENGEEERAFHVFSQMRLMGVLPDEF------TIATLAKASSCLTALEQGRQI 640
Query: 161 VAN-------------TGLVDFYSKLGRM 176
AN T LVD Y+K G +
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSI 669
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 70 PDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSG-----NYVEAFE 124
P+ + +N ++ M+ +CG + A ++F MP+RD VSW +++ S N +AF
Sbjct: 72 PERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFL 131
Query: 125 QFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLN----------------IVANTGLVD 168
F + ++ T + M++ C+ S + W + VA LV+
Sbjct: 132 LFRILRQDVVYTSRMTLSPMLK--LCLHSGYVWASESFHGYACKIGLDGDEFVAG-ALVN 188
Query: 169 FYSKLGRMKH 178
Y K G++K
Sbjct: 189 IYLKFGKVKE 198
>AT4G39530.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:18374736-18377240 REVERSE
LENGTH=834
Length = 834
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F++L D G +++ C L + G K++ +++ G E D MN ++ +V+
Sbjct: 237 FYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVK 296
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
CG ++ AHKLF MP ++ +SW TL+ + + EA E F M
Sbjct: 297 CGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSM 341
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 67 GFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQF 126
G E D Y N +++++ R G M+ A K+F MPER+ VSW T++ G Y E+ F
Sbjct: 74 GLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVF 133
Query: 127 LCMWEEFNDCRSR-TFATMVRA----------------SFCVSSSWFWLNIVANTGLVDF 169
L W D + ++ ++A SF V S F ++ T L+DF
Sbjct: 134 LEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSG-FDRDVYVGTLLIDF 192
Query: 170 YSKLGRMKHC 179
Y K G + +
Sbjct: 193 YLKDGNIDYA 202
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F EL+ T+ +V L S++ + ++ G E + Y N +L M+ +
Sbjct: 543 FLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAK 602
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG DAHK F RD V W ++I + G +A + M E + TF +
Sbjct: 603 CGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGV 662
Query: 145 VRA 147
+ A
Sbjct: 663 LSA 665
>AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:1864796-1866472 FORWARD
LENGTH=558
Length = 558
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T A++ C L S+R K V YMI NG E D + M+ RCG + A +F M
Sbjct: 314 TLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMM 373
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
PER+ +SW ++I +G + EA + F M + S TF +++ A
Sbjct: 374 PERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422
>AT3G03580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:860695-863343 REVERSE
LENGTH=882
Length = 882
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ +++ C GL V+ ++ GFE DL+ N ++ M+ R GL+ A ++F +M
Sbjct: 108 TFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEM 167
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQF 126
P RD VSW +LI G Y EA E +
Sbjct: 168 PVRDLVSWNSLISGYSSHGYYEEALEIY 195
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T +++ C LR + K ++NYM+ GF + N ++ ++ +CG M+ A +F M
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVS------ 152
+D VSW ++I + SG+ +EA + F M T+ ++ S ++
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428
Query: 153 -------SSWFWLNIVANTGLVDFYSKLGRM 176
S +++ + L+D Y+K G +
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459
>AT2G13600.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:5671493-5673586 FORWARD
LENGTH=697
Length = 697
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
++ ++++ C GL + +V + + + F D+Y + ++ M+ +CG + DA ++F +M
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWL 158
+R+ VSW +LI +G VEA + F M E + T A+++ A C S S +
Sbjct: 214 GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISA--CASLSAIKV 271
Query: 159 ----------------NIVANTGLVDFYSKLGRMKHC 179
+I+ + VD Y+K R+K
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 9 SWLCVLGTKRQWTCFKFWELEGDAANVGGSTYDALVNFCVGLRS-IRGIKRVFNYMISNG 67
S C+L KR+ C + AN+ + D L +G+++ + +K F + +G
Sbjct: 372 SLFCLL--KRESVCPTHYSF----ANILKACAD-LAELHLGMQAHVHVLKHGFKF--QSG 422
Query: 68 FEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFL 127
E D++ N ++ M+V+CG + + + +F M ERD VSW +I +G EA E F
Sbjct: 423 EEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 128 CMWE 131
M E
Sbjct: 483 EMLE 486
>AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14275800-14277551 FORWARD
LENGTH=583
Length = 583
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 32 AANVGGS--TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLML 89
++NV S T+ +++ C L ++R K V + + +GF D Y ++ + +CG M
Sbjct: 100 SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDME 159
Query: 90 DAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA-- 147
A ++F MPE+ V+W +L+ +G EA + F M E + S TF +++ A
Sbjct: 160 GARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACA 219
Query: 148 -SFCVS-SSWFW---------LNIVANTGLVDFYSKLG 174
+ VS SW LN+ T L++ YS+ G
Sbjct: 220 QTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCG 257
>AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:9500116-9502221 REVERSE
LENGTH=701
Length = 701
Score = 60.8 bits (146), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 62 YMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVE 121
Y I G D+Y NR+L +++ G + A+ LF +MP+RD+VSW T+I G +
Sbjct: 25 YAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLED 84
Query: 122 AFEQFLCMWEEFNDCRSRTFATMVRASFCVS-------------SSWFWLNIVANTGLVD 168
A+ F CM +D +F+ +++ V + N+ + LVD
Sbjct: 85 AWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVD 144
Query: 169 FYSKLGRMK 177
Y+K R++
Sbjct: 145 MYAKCERVE 153
>AT3G09040.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2761195-2764281 REVERSE
LENGTH=1028
Length = 1028
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F +++ N+ T+ +L++ C + + + +I +L+ N ++ M+ +
Sbjct: 416 FMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAK 475
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQF----LCMWEEFNDCRSRT 140
CG + DA ++F M +RD V+W T+IG V N EAF+ F LC C + T
Sbjct: 476 CGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLAST 535
Query: 141 FATMV--------RASFCVSSS-WFWLNIVANTGLVDFYSKLGRMK 177
+ C+S ++ + L+D YSK G +K
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIK 581
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 37 GSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFA 96
G+ + + C + + K+V + G + DL+T + ++ M+ +CG++ DA K+F+
Sbjct: 529 GACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFS 588
Query: 97 DMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
+PE VS LI N EA F M + TFAT+V A
Sbjct: 589 SLPEWSVVSMNALIAGY-SQNNLEEAVVLFQEMLTRGVNPSEITFATIVEA 638
>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor 19 |
chr3:1493684-1495381 REVERSE LENGTH=565
Length = 565
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ ++ C GLR I+ V +++ GFE ++Y +LHM++ CG + ++F D+
Sbjct: 109 TFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDI 168
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMV----RASFCVSSS 154
P+ + V+W +LI V++ + +A E F M ++ R V+
Sbjct: 169 PQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228
Query: 155 WF-----------------WLNIVANTGLVDFYSKLGRMK 177
WF N++ T L+D Y+K G ++
Sbjct: 229 WFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLR 268
>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10304850-10307465 FORWARD
LENGTH=871
Length = 871
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F E+E + + T A++N C R + KRV ++ N D++ N ++ M+ +
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 444
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFN-DCRSRTFAT 143
CG M +A +F++M +D +SW T+IG + EA F + EE RT A
Sbjct: 445 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504
Query: 144 MVRASFCVSS--------------SWFWLNIVANTGLVDFYSKLGRMKHCH 180
++ A +S+ +F VAN+ LVD Y+K G + H
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANS-LVDMYAKCGALLLAH 554
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C L + + + Y++ NG+ D + N ++ M+ +CG +L AH LF D+ +D VSW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 107 MTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA---SFCVSSSWFWLNIV 161
+I G EA F M + + +F +++ A S V W + NI+
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626
>AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23246168-23247973 FORWARD
LENGTH=573
Length = 573
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 42 ALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPER 101
+L+N +R +RVF+ + DL N V++ + + GL+ DA KLF +MPER
Sbjct: 102 SLLNMYSSCGDLRSAQRVFD----DSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPER 157
Query: 102 DAVSWMTLIGRLVDSGNYVEAFEQFLCMW-EEFNDC--RSRTFATMVRASFC-------- 150
+ +SW LI V G Y EA + F M + N+ R F S C
Sbjct: 158 NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQ 217
Query: 151 -------VSSSWFWLNIVANTGLVDFYSKLGRMK 177
+ ++IV T L+D Y+K G ++
Sbjct: 218 GKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLE 251
>AT4G35130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:16721084-16723498 REVERSE
LENGTH=804
Length = 804
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY ++ G+ S+ K++ +I GF D+Y N ++ ++++ G DA K+F +M
Sbjct: 132 TYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEM 191
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDC--RSRTFATMVRASFC------ 150
PERD VSW ++I + G+ + L +++E C + F+TM C
Sbjct: 192 PERDIVSWNSMISGYLALGDGFSS----LMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247
Query: 151 ----------VSSSWFWLNIVANTGLVDFYSKLGRMKHCH 180
V S +++ T ++D YSK G + +
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAE 287
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
+ + Y + GF P + ++ M+ CG + A +F M E++ +SW ++I V +
Sbjct: 350 RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQN 409
Query: 117 GNYVEAFEQFLCMWEEFNDCRSRTFATMVRA---SFCVSS----------SWFWLNIVAN 163
G A E F +W+ S T A+++ A S +S S +W N +
Sbjct: 410 GKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIIL 469
Query: 164 TGLVDFYSKLGRMK 177
LV Y+ G ++
Sbjct: 470 NSLVHMYAMCGDLE 483
>AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21939868-21941784 REVERSE
LENGTH=638
Length = 638
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 12 CVLGTKRQWTCFKFWE--LEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFE 69
C R+ F + LE ++ T+ ++ C + K+V ++ +GF
Sbjct: 124 CAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFG 183
Query: 70 PDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
D+Y N ++H++ CG + A K+F +MPER VSW ++I LV G Y A + F M
Sbjct: 184 GDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM 243
Query: 130 WEEFN 134
F
Sbjct: 244 QRSFE 248
>AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:11254025-11255737 REVERSE
LENGTH=570
Length = 570
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F EL G T ++ LR + ++V Y + G E D Y N ++ M+
Sbjct: 34 FGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYAS 93
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFN 134
G + HK+F +MP+RD VSW LI V +G + +A F M +E N
Sbjct: 94 LGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESN 143
>AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11245976-11247763 FORWARD
LENGTH=595
Length = 595
Score = 59.3 bits (142), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY L+ + +R + + + +I +GF +Y N +LH++ CG + A+K+F M
Sbjct: 123 TYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKM 182
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFND--CRSRTFATMVRASFCVSSSWF 156
PE+D V+W ++I ++G EA L ++ E N + F + S C
Sbjct: 183 PEKDLVAWNSVINGFAENGKPEEA----LALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 157 WL---------------NIVANTGLVDFYSKLGRMK 177
L N+ ++ L+D Y++ GR++
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVE 274
Score = 58.2 bits (139), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
+ E+ G T +L++ C + ++ KRV YMI G +L++ N +L ++ R
Sbjct: 210 YTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYAR 269
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
CG + +A LF +M ++++VSW +LI L +G EA E F M
Sbjct: 270 CGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
>AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:17859582-17861261 REVERSE
LENGTH=559
Length = 559
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%)
Query: 17 KRQWTCFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMN 76
K + T F + + + T+ + C IR K++ + GF D+Y N
Sbjct: 86 KPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQN 145
Query: 77 RVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFN 134
++H + CG +A K+F +MP RD VSW +I +G Y EA + F M E N
Sbjct: 146 SLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPN 203
>AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:2745208-2747757 REVERSE
LENGTH=849
Length = 849
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 30 GDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLML 89
D T+ ++ CV L K + +Y+I G E D N ++ M+ + G +
Sbjct: 115 ADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIF 174
Query: 90 -DAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA- 147
DA+ F + ++D VSW +I ++ +AF F M +E + T A ++
Sbjct: 175 PDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVC 234
Query: 148 ----------------SFCVSSSWFWLNIVANTGLVDFYSKLGRMKH 178
S+ V SW ++ LV FY ++GR++
Sbjct: 235 ASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEE 281
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 31 DAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGF-----EPDLYTMNRVLHMHVRC 85
+A + T +L+ FC+ ++ I +K V Y + G EP L N +L + +C
Sbjct: 426 EAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKL--GNALLDAYAKC 483
Query: 86 GLMLDAHKLFADMPERDA-VSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
G + AHK+F + ER VS+ +L+ V+SG++ +A Q L + E + T++ M
Sbjct: 484 GNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDA--QML--FTEMSTTDLTTWSLM 539
Query: 145 VR 146
VR
Sbjct: 540 VR 541
>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3791454-3793883 REVERSE
LENGTH=809
Length = 809
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 43 LVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERD 102
L+ C +R K + ++ +GF DL+ M + +M+ +C + +A K+F MPERD
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 103 AVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSS--------- 153
VSW T++ +G A E M EE +F T+V VS+
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEE---NLKPSFITIVSVLPAVSALRLISVGKE 257
Query: 154 -------SWFWLNIVANTGLVDFYSKLGRMK 177
S F + +T LVD Y+K G ++
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288
>AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19784502-19786808 FORWARD
LENGTH=768
Length = 768
Score = 58.2 bits (139), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY +L+ C RS+ +++ ++++++ + D N +L M+ +CG + DA ++F M
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSS 154
PER+ VS+ ++I +G EA +L M +E F ++++A C SSS
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKA--CASSS 182
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T L+ CV + S++ +V Y + G P+ + N ++ M+ +CG + A ++F M
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQF 126
RD VSW TLI SG EA F
Sbjct: 535 DNRDVVSWSTLIVGYAQSGFGEEALILF 562
>AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26203968-26206184 FORWARD
LENGTH=738
Length = 738
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY +++ C L+ I K + M+ +GFE L + +L M++RC L+ D+ ++F +
Sbjct: 269 TYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCI 328
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVR-----ASF---- 149
+ VSW +LI LV +G A +F M + S T ++ +R A F
Sbjct: 329 EYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGR 388
Query: 150 ----CVSSSWFWLNIVANTGLVDFYSKLG 174
V+ F + A +GL+D Y K G
Sbjct: 389 QIHGIVTKYGFDRDKYAGSGLIDLYGKCG 417
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 40 YDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMP 99
+ L+ C+ RSI GIK + +M+ +GF P + ++++ ++CG + A ++F M
Sbjct: 68 FSQLLRQCIDERSISGIKTIQAHMLKSGF-PAEISGSKLVDASLKCGDIDYARQVFDGMS 126
Query: 100 ERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA------------ 147
ER V+W +LI L+ EA E + M T +++ +A
Sbjct: 127 ERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQR 186
Query: 148 --SFCVSSSWFWLNIVANTGLVDFYSKLGRMKHC 179
V N+ + LVD Y K G+ +
Sbjct: 187 SHGLAVILGLEVSNVFVGSALVDMYVKFGKTREA 220
>AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:14249608-14251791 FORWARD
LENGTH=727
Length = 727
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T +++ C L ++ K+V + I +GF ++ + + M+ +CG + D + +F
Sbjct: 425 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRT 484
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA---SFCVSSSW 155
P +D VSW +I L +G EA E F M E + TF ++ A V W
Sbjct: 485 PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW 544
Query: 156 FWLNIVANT-GL----------VDFYSKLGRMKHC 179
F+ N++++ GL VD S+ G++K
Sbjct: 545 FYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEA 579
>AT4G21065.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11246375-11247763 FORWARD
LENGTH=462
Length = 462
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
+ E+ G T +L++ C + ++ KRV YMI G +L++ N +L ++ R
Sbjct: 77 YTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYAR 136
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
CG + +A LF +M ++++VSW +LI L +G EA E F M
Sbjct: 137 CGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 181
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 50 LRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTL 109
+ +R + + + +I +GF +Y N +LH++ CG + A+K+F MPE+D V+W ++
Sbjct: 1 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60
Query: 110 IGRLVDSGNYVEAFEQFLCMWEEFND--CRSRTFATMVRASFCVSSSWFWL--------- 158
I ++G EA L ++ E N + F + S C L
Sbjct: 61 INGFAENGKPEEA----LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI 116
Query: 159 ------NIVANTGLVDFYSKLGRMKHC 179
N+ ++ L+D Y++ GR++
Sbjct: 117 KVGLTRNLHSSNVLLDLYARCGRVEEA 143
>AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11461864-11463684 REVERSE
LENGTH=606
Length = 606
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY L+ C L+SIR K++ + G E D++ N +++M+ RCG M + +F +
Sbjct: 134 TYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKL 193
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFW- 157
+ A SW +++ G + E F M E N + MV A +++
Sbjct: 194 ESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETN--LKAEESGMVSALLACANTGALN 251
Query: 158 ---------------LNIVANTGLVDFYSKLG 174
LNI+ T LVD Y K G
Sbjct: 252 LGMSIHGFLLRNISELNIIVQTSLVDMYVKCG 283
>AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8672774-8674881 FORWARD
LENGTH=665
Length = 665
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 27 ELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCG 86
+LEG Y+ L+ C + + + V +++ + F D+ N +L+M+ +CG
Sbjct: 50 DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109
Query: 87 LMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEA---FEQFLCMWEEFNDCRSRTFAT 143
+ +A K+F MP+RD V+W TLI +A F Q L N+ T ++
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEF---TLSS 166
Query: 144 MVRAS--------------FCVSSSWFWLNIVANTGLVDFYSKLGRM 176
+++A+ FCV F N+ + L+D Y++ G M
Sbjct: 167 VIKAAAAERRGCCGHQLHGFCVKCG-FDSNVHVGSALLDLYTRYGLM 212
>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:22561941-22564433 REVERSE
LENGTH=830
Length = 830
Score = 55.8 bits (133), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 27/152 (17%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C L+ R + V Y++ +G E ++ + + M+ +CG++ DA K+F ++P+R+AV+W
Sbjct: 183 CGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAW 242
Query: 107 MTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTF-ATMVRASFCVSSS----------- 154
L+ V +G EA F+D R + T V S C+S+S
Sbjct: 243 NALMVGYVQNGKNEEAIRL-------FSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQ 295
Query: 155 --------WFWLNIVANTGLVDFYSKLGRMKH 178
L+ + T L++FY K+G +++
Sbjct: 296 SHAIAIVNGMELDNILGTSLLNFYCKVGLIEY 327
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
K V Y I + FE D+ + V+ M+ +CG ++DA K+F E+D + W TL+ +S
Sbjct: 395 KEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAES 454
Query: 117 GNYVEAFEQFLCMWEE 132
G EA F M E
Sbjct: 455 GLSGEALRLFYGMQLE 470
>AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:14516226-14518186 FORWARD
LENGTH=621
Length = 621
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY+ + C L I + V + + G E D++ + ++ M+ +CG + A KLF ++
Sbjct: 134 TYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEI 193
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
ERD VSW ++I ++G +A + F M EE + RT +M+ A
Sbjct: 194 TERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 242
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 13/168 (7%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F ++E + T +++ C L +R + + I+ + ++++ M+ +
Sbjct: 221 FRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 280
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG + A ++F M ++D V+W +I +G EAF+ F M + + T +T+
Sbjct: 281 CGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTV 340
Query: 145 VRASFCV-------------SSSWFWLNIVANTGLVDFYSKLGRMKHC 179
+ A V S NI TGLVD Y K GR++
Sbjct: 341 LSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEA 388
>AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:11188803-11190605 FORWARD
LENGTH=600
Length = 600
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLM--LDAHKLFA 96
TY L+ C G + +K + N++ G D+Y N ++ + RCG + DA KLF
Sbjct: 119 TYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFE 178
Query: 97 DMPERDAVSWMTLIGRLVDSGNYVEAFEQF-------LCMWEEFNDCRSRTFATMVRASF 149
M ERD VSW +++G LV +G +A F L W D +R + +F
Sbjct: 179 KMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYAR--CREMSKAF 236
Query: 150 CVSSSWFWLNIVANTGLVDFYSKLGRMK 177
+ N V+ + +V YSK G M+
Sbjct: 237 ELFEKMPERNTVSWSTMVMGYSKAGDME 264
>AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:17858705-17860384 FORWARD
LENGTH=559
Length = 559
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 44/180 (24%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHV--------------- 83
TY ++ L R +++ +I G E D + N +LHM+V
Sbjct: 128 TYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGM 187
Query: 84 ----------------RCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFL 127
+CGL+ A LF +MP+R+ VSW ++I V +G + +A + F
Sbjct: 188 IGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFR 247
Query: 128 CMWEEFNDCRSRTFATMVRASFCVSSS----W---------FWLNIVANTGLVDFYSKLG 174
M E+ T +++ A + +S W F LN + T L+D Y K G
Sbjct: 248 EMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCG 307
>AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8347200-8349347 FORWARD
LENGTH=715
Length = 715
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 53 IRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGR 112
I+G K + Y+I G + D+Y + ++ M+ + + D+ ++F+ + RD +SW +L+
Sbjct: 259 IKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317
Query: 113 LVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSS-------------SWFWLN 159
V +G Y EA F M + F++++ A +++ F N
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377
Query: 160 IVANTGLVDFYSKLGRMK 177
I + LVD YSK G +K
Sbjct: 378 IFIASALVDMYSKCGNIK 395
>AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:14924494-14926146 REVERSE
LENGTH=550
Length = 550
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ ++ C +R V ++ GF+ D+ + + +C + A K+F +M
Sbjct: 112 TFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEM 171
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFW- 157
PER+AVSW L+ V SG EA F M E + +V++ V++ +
Sbjct: 172 PERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFD 231
Query: 158 ----LNIVANTGLVDFYSKLGRM 176
+I++ T ++D Y+K G M
Sbjct: 232 EMPKRDIISYTSMIDGYAKGGDM 254
>AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:15405068-15406573 REVERSE
LENGTH=501
Length = 501
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ L+ C + +++ ++ +GF+ D+Y N ++H++ C DA K+F +M
Sbjct: 115 TFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEM 174
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFC-------- 150
ER+ VSW +++ LV++G FE F C C T +V S C
Sbjct: 175 TERNVVSWNSIMTALVENGKLNLVFECF-CEMIGKRFCPDET-TMVVLLSACGGNLSLGK 232
Query: 151 -----VSSSWFWLNIVANTGLVDFYSKLGRMKH 178
V LN T LVD Y+K G +++
Sbjct: 233 LVHSQVMVRELELNCRLGTALVDMYAKSGGLEY 265
>AT1G17630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:6064525-6066720 FORWARD
LENGTH=731
Length = 731
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 23 FKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMH 82
F + G+A V G + C L ++ ++V Y+I GFE L + N ++H++
Sbjct: 282 FHLMRMSGNA--VSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVY 339
Query: 83 VRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFN 134
+ G + DA LF + + SW +LI VD+G EA F EE N
Sbjct: 340 GKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLF-SELEEMN 390
>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
repeat (TPR)-like superfamily protein |
chr1:5329111-5331711 FORWARD LENGTH=866
Length = 866
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ ++ C G+ + K V +++ G+E D+ +N ++ M+V+CG + A LF M
Sbjct: 198 TFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRM 257
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
P RD +SW +I ++G E E F M D T +++ A
Sbjct: 258 PRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISA 306
>AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:9045695-9047488 REVERSE
LENGTH=597
Length = 597
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 71 DLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEA---FEQFL 127
+LY+ N ++ +V+ G+++ A +F MPERD VSW T++ GN EA +++F
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 128 CMWEEFND----------CRSRTFATMVRASFCVSSSWFWLNIVANTGLVDFYSKLGRMK 177
+FN+ +SR +A V + F N+V + ++D Y+K G+M+
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
>AT1G69350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26069882-26072245 FORWARD
LENGTH=787
Length = 787
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLR---SIRGIKRVFNYMISNGFEPDLYTMNRVLHM 81
+ L + + + +++ C G R S+ G +V +I G + D +L M
Sbjct: 88 YHRLVSETTQISKFVFPSVLRACAGSREHLSVGG--KVHGRIIKGGVDDDAVIETSLLCM 145
Query: 82 HVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTF 141
+ + G + DA K+F MP RD V+W TL+ +++G V+A F CM ++ + + T
Sbjct: 146 YGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTM 205
Query: 142 ATMVRA 147
++V
Sbjct: 206 ISVVEG 211
>AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:337965-340442 FORWARD
LENGTH=825
Length = 825
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F ++ G ST+ ++ S+ K++ ++I +G ++++ + ++ M+ +
Sbjct: 440 FTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAK 499
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWE 131
CG + DA ++F +MP+R+AVSW LI D+G+ A F M E
Sbjct: 500 CGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 72 LYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWE 131
L+ N ++ M+ +C + +A +F +P+R VSW LI V G + + F M
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 132 EFNDCRSRTFATMVRASFCVSS-------------SWFWLNIVANTGLVDFYSKLGRMK 177
TFAT+++AS +S S N+ + +GLVD Y+K G +K
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
>AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:7939611-7942898 REVERSE
LENGTH=1064
Length = 1064
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 44 VNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDA 103
V+ C GL++++ +++ +GF DL N ++ ++ RCG + +++ F D
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 657
Query: 104 VSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRAS 148
++W L+ SGN EA F+ M E D + TF + V+A+
Sbjct: 658 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
+ ++++ C + S+ +++ ++ GF D Y N ++ ++ G ++ A +F++M
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
+RDAV++ TLI L G +A E F M + + S T A++V A
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398
>AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:26928247-26930316 REVERSE
LENGTH=689
Length = 689
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 28 LEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGL 87
LE V +T+ AL+ CV +S+ K+V ++ NG E + + +++HM+ CG
Sbjct: 102 LEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGS 161
Query: 88 MLDAHKLFADMPERDAVSWMTLIGRLVDSGN--YVEAFEQFLCMWEEFNDCRSRTFATMV 145
+ DA K+F + + SW L+ V SG Y + F M E D + + +
Sbjct: 162 VKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLSNVF 221
Query: 146 RASFCVSSSW--------------FWLNIVANTGLVDFYSKLGRM 176
+ SF +S+ + ++ T LVD Y K G++
Sbjct: 222 K-SFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKV 265
>AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:2977952-2979466 REVERSE
LENGTH=504
Length = 504
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 67 GFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQF 126
GFE +Y ++ M++ G M+DAHK+F +MPER+ V+W +I L + G+ FE+
Sbjct: 153 GFESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGD----FEKA 208
Query: 127 LCMWEEFND 135
LC E+ +
Sbjct: 209 LCFLEKMPN 217
>AT3G15130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5097153-5099222 REVERSE
LENGTH=689
Length = 689
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 58 RVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSG 117
+V Y++ +G +L T N ++ M+ +C L A+K+F MPER+ VSW L+ V +G
Sbjct: 27 QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG 86
Query: 118 NYVEAFEQFLCMWEEFNDCRSRTFATMVRA--------------SFCVSSSWFWLNIVAN 163
+ + F M + TF+T ++A FC+ + + V N
Sbjct: 87 DLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN 146
Query: 164 TGLVDFYSKLGRM 176
+ LVD YSK GR+
Sbjct: 147 S-LVDMYSKCGRI 158
>AT3G26540.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9744542-9746644 REVERSE
LENGTH=700
Length = 700
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 40 YDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMP 99
Y+ L C + ++V +++++ P ++ +NR + + +CG + DA +LF +MP
Sbjct: 64 YERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMP 123
Query: 100 ERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFA------------TMVRA 147
ERD SW +I +G E F F M + +FA ++R
Sbjct: 124 ERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQ 183
Query: 148 SFCVSSSWFWL-NIVANTGLVDFYSK 172
C + + N+ T +VD Y K
Sbjct: 184 LHCAVVKYGYSGNVDLETSIVDVYGK 209
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 28 LEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGL 87
+ + N+ T ++N C G+ ++ K+ ++ +G++ ++ N +L M+ +CG
Sbjct: 386 MRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGT 445
Query: 88 MLDAHKLFADMPE-RDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVR 146
+ A+ F M E RD VSW L+ + G +A F M E + T AT++
Sbjct: 446 LQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKY-TLATLLA 504
Query: 147 ASFCVSS-------------SWFWLNIVANTGLVDFYSK 172
+ + + +++V +VD YSK
Sbjct: 505 GCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSK 543
>AT3G28640.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:10731518-10733032 REVERSE
LENGTH=504
Length = 504
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 57 KRVFNYMISNG-FEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVD 115
K++ +++ NG F D + VL ++V L+LDA K+F ++P+ D V W L+ V
Sbjct: 136 KQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVR 195
Query: 116 SGNYVEAFEQFLCMW------EEFNDCRSRTFATMVRA--------SFCVSSSWFWLNIV 161
G E E F M +EF+ + T V A F SW ++
Sbjct: 196 CGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVF 255
Query: 162 ANTGLVDFYSKLG 174
T LVD Y+K G
Sbjct: 256 VGTALVDMYAKCG 268
>AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:3102877-3105864 REVERSE
LENGTH=995
Length = 995
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 48 VGLRSIRGIKRVFNYMISNGFEPDLYTM-NRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
VGL+ R V ++I+ G + + N +++M+ +CG + DA ++F M ++D+VSW
Sbjct: 327 VGLKKGR---EVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSW 383
Query: 107 MTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSW----------- 155
++I L +G ++EA E++ M +D +F + S C S W
Sbjct: 384 NSMITGLDQNGCFIEAVERYKSMRR--HDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441
Query: 156 ----FWLNIVANTGLVDFYSKLGRMKHC 179
LN+ + L+ Y++ G + C
Sbjct: 442 LKLGIDLNVSVSNALMTLYAETGYLNEC 469
>AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9128516-9130321 FORWARD
LENGTH=601
Length = 601
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 38 STYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFAD 97
ST+ + C+ + + V+ + G++ D++ + VL+++++CG M +A LF
Sbjct: 117 STFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGK 176
Query: 98 MPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSS---- 153
M +RD + W T++ +G ++A E + M E +++AS +
Sbjct: 177 MAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMG 236
Query: 154 ---------SWFWLNIVANTGLVDFYSKLG 174
+ +N+V T LVD Y+K+G
Sbjct: 237 RSVHGYLYRTGLPMNVVVETSLVDMYAKVG 266
>AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2677122-2679179 REVERSE
LENGTH=685
Length = 685
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 17/156 (10%)
Query: 37 GSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFA 96
G T+ ++ C S + + + ++ GF D+ M +L ++ G + DAHKLF
Sbjct: 111 GFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFD 170
Query: 97 DMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCV----- 151
++P+R V+W L SG + EA + F M E + ++ + S CV
Sbjct: 171 EIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEM--GVKPDSYFIVQVLSACVHVGDL 228
Query: 152 -SSSWF---------WLNIVANTGLVDFYSKLGRMK 177
S W N T LV+ Y+K G+M+
Sbjct: 229 DSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 43 LVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERD 102
+++ CV + + + + YM + + + +++++ +CG M A +F M E+D
Sbjct: 218 VLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKD 277
Query: 103 AVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVS------SSW- 155
V+W T+I + E E FL M +E + + F+ + S C S W
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIELFLQMLQE--NLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 156 --------FWLNIVANTGLVDFYSKLGRM 176
F N+ L+D Y+K G M
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAM 364
>AT1G56570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21195804-21197721 FORWARD
LENGTH=611
Length = 611
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 44 VNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDA 103
V + S+ K++ +I GF+ +L MN +L ++ RCG + +A F +M ++D
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDL 279
Query: 104 VSWMTLIGRLVDSGNYVEAFEQFLCMWEEFND----CRSRTFATMVRASFCVSS------ 153
++W TLI L S + + L M++ F TF ++V A +++
Sbjct: 280 ITWNTLISELERSDS-----SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQ 334
Query: 154 -------SWFWLNIVANTGLVDFYSKLGRMK 177
F N+ L+D Y+K G +
Sbjct: 335 LHGRIFRRGFNKNVELANALIDMYAKCGNIP 365
>AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26917822-26920059 REVERSE
LENGTH=745
Length = 745
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 38 STYDALVNFCVGLRSIRGIKRVFNYMISNGF--EPDLYTMNRVLHMHVRCGLMLDAHKLF 95
Y AL C R++ + ++M+S+ + ++ N +++M+ +CG +L A ++F
Sbjct: 60 QAYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVF 119
Query: 96 ADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
MPER+ VSW LI V +GN E F F M
Sbjct: 120 DTMPERNVVSWTALITGYVQAGNEQEGFCLFSSM 153
>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2514374-2516599 REVERSE
LENGTH=741
Length = 741
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 48/185 (25%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHK----- 93
T+ ++ C ++ + +++ +++ G + DLY ++ M+V+ G + DAHK
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 94 --------------------------LFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFL 127
LF ++P +D VSW +I ++GNY EA E F
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 128 CMWEEFNDCRSRTFATMVRASFCVSSS----------W-----FWLNIVANTGLVDFYSK 172
M + T T+V A C S W F N+ L+D YSK
Sbjct: 256 DMMKTNVRPDESTMVTVVSA--CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313
Query: 173 LGRMK 177
G ++
Sbjct: 314 CGELE 318
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 38 STYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFAD 97
ST +V+ C SI ++V ++ +GF +L +N ++ ++ +CG + A LF
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 98 MPERDAVSWMTLIGRLVDSGNYVEA---FEQFLCMWEEFNDCRSRTFATMVRASFCVSS- 153
+P +D +SW TLIG Y EA F++ L E ND T +++ A + +
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV---TMLSILPACAHLGAI 383
Query: 154 ---SWFWLNI------VAN-----TGLVDFYSKLGRMKHCH 180
W + I V N T L+D Y+K G ++ H
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
>AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2134060-2136249 REVERSE
LENGTH=729
Length = 729
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 42 ALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPER 101
L+ G+ I ++ + ++ + GF+ D+ MN +L+++ +C + DA LF M +R
Sbjct: 149 TLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQR 208
Query: 102 DAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLNIV 161
D VSW T+I GN E + M + +TF AS VS + L
Sbjct: 209 DMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFG----ASLSVSGTMCDL--- 261
Query: 162 ANTGLVDFYSKLGRMKHCH 180
++GRM HC
Sbjct: 262 ----------EMGRMLHCQ 270
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ +L+ C L+ + + ++ NGF D Y + +++++ + GL+ A K+F +M
Sbjct: 48 TFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEM 107
Query: 99 PERDAVSWMTLIGRLVDSGNYVEA 122
ERD V W +IG +G EA
Sbjct: 108 RERDVVHWTAMIGCYSRAGIVGEA 131
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
+ + GD T+ A ++ + + + + ++ GF+ D++ ++ M+++
Sbjct: 233 LYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLK 292
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG ++++ +P +D V W +I L+ G +A F M + +D S A++
Sbjct: 293 CGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASV 352
Query: 145 VRA-----SFCVSSS--------WFWLNIVANTGLVDFYSKLGRM 176
V + SF + +S + L+ A L+ Y+K G +
Sbjct: 353 VASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL 397
>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12712884-12715100 FORWARD
LENGTH=738
Length = 738
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F ++E + T +++ C +R++ ++V +Y+ N +L N +L M+ +
Sbjct: 220 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTK 279
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFE 124
CG + DA +LF M E+D V+W T++ S +Y A E
Sbjct: 280 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAARE 319
>AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:2753099-2754731 FORWARD
LENGTH=511
Length = 511
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T +++ C L + +R+ Y NGF ++Y N + M+ +CG++ A +LF ++
Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 99 -PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
+R+ SW ++IG L G + EA F M E + TF ++ A
Sbjct: 277 GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLA 326
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
+RVF+ M D+ N ++ + R G M A +LF MP ++ SW T+I +
Sbjct: 137 RRVFDEMSKR----DVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQN 192
Query: 117 GNYVEAFEQFLCMWEE 132
GNY EA + FLCM ++
Sbjct: 193 GNYSEALKMFLCMEKD 208
>AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26548076-26549674 REVERSE
LENGTH=532
Length = 532
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F ++ + ++ T+ ++ C L ++V MI G E + ++ M+ +
Sbjct: 72 FLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSK 131
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
G ++D+ ++F + E+D VSW L+ + +G EA F M+ E + T +++
Sbjct: 132 YGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSV 191
Query: 145 VR--ASFCVSSSWFWLN----------IVANTGLVDFYSKLG 174
V+ AS + ++ +V T ++ FYS +G
Sbjct: 192 VKTCASLKILQQGKQVHAMVVVTGRDLVVLGTAMISFYSSVG 233
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
K++ + NGF D N ++ M+ +CG ++ A +F +P + VSW ++I +
Sbjct: 301 KQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVN 360
Query: 117 GNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFC 150
G+ V+A E F M EE + + +V S C
Sbjct: 361 GDGVKALEIFREMCEEGSGVLPNSVTFLVVISAC 394
>AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11695611-11697896 FORWARD LENGTH=761
Length = 761
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 68 FEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFL 127
++PDL N ++ M+ +CG + DA+++FA M ++D VSW ++I L G +A F
Sbjct: 499 YDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFK 558
Query: 128 CMWEEFNDCRSRTFATMVRA 147
M + S TF ++ A
Sbjct: 559 EMLDSGKKPNSVTFLGVLSA 578
>AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28025153-28027840 REVERSE LENGTH=895
Length = 895
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY +++ C L +R K V +I G E D++ ++ ++ +CG M +A ++F+ +
Sbjct: 253 TYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRI 311
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWE---EFNDCR-SRTFATMVRASF-CVSS 153
P VSW ++ S + A E F M E N+C + + R S C +S
Sbjct: 312 PNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEAS 371
Query: 154 --------SWFWLNIVANTGLVDFYSKLGRM 176
S F+L+ L+ YSK G +
Sbjct: 372 QVHAWVFKSGFYLDSSVAAALISMYSKSGDI 402
>AT5G13230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4222514-4224982 FORWARD
LENGTH=822
Length = 822
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+D + +GL + K V ++ + D +L ++ + G M DA K+F +M
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFC-------- 150
P+ D V W +I R +G EA + F+ M E F T ++++
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGE 368
Query: 151 -----VSSSWFWLNIVANTGLVDFYSKLGRM 176
V F L+I + L+D Y+K +M
Sbjct: 369 QLHGLVVKVGFDLDIYVSNALIDVYAKCEKM 399
>AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4246954-4249212 REVERSE
LENGTH=752
Length = 752
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 23 FKF-WELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHM 81
F+F E++ +V +Y L C LRS+ + + + M P + N VL M
Sbjct: 68 FEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQM 127
Query: 82 HVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTF 141
+ C + DA KLF +M E +AVS T+I + G +A F M + S +
Sbjct: 128 YCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMY 187
Query: 142 ATMVRASFCVSSSWFWLNIVAN-------------TGLVDFYSKLG 174
T++++ + F I A+ TG+V+ Y K G
Sbjct: 188 TTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCG 233
>AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:17517382-17519157 REVERSE
LENGTH=591
Length = 591
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C L ++ K+V +++ NG L N ++ M+ RCG M A+++F M ER+ VSW
Sbjct: 227 CANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSW 286
Query: 107 MTLIGRLVDSGNYVEAFEQF 126
LI L +G EA E F
Sbjct: 287 TALISGLAMNGFGKEAIEAF 306
>AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:5183813-5185873 REVERSE
LENGTH=686
Length = 686
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C +++ + + + ++I G +++ N V+ M+V L+ DAHK+F +M ER+ V+W
Sbjct: 15 CGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTW 74
Query: 107 MTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSR-TFATMVRASFCVSSSWFWL------- 158
T++ G +A E + M + + + ++ +++A V +
Sbjct: 75 TTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIG 134
Query: 159 ------NIVANTGLVDFYSKLGRM 176
++V +VD Y K GR+
Sbjct: 135 KENLRGDVVLMNSVVDMYVKNGRL 158
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%)
Query: 43 LVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERD 102
++ C L S+ K++ I G+E + T ++ M+V+CG + + LF M ERD
Sbjct: 449 ILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERD 508
Query: 103 AVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA 147
VSW +I +G EAF F M + TF ++ A
Sbjct: 509 VVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSA 553
>AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:6819926-6822610 REVERSE
LENGTH=894
Length = 894
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 32 AANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDA 91
+ V STY L+ C+ SI + R+ + EPD++ ++L M+ +CG + DA
Sbjct: 76 GSKVKRSTYLKLLESCIDSGSIH-LGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADA 134
Query: 92 HKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEE 132
K+F M ER+ +W +IG + E + F M ++
Sbjct: 135 RKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKD 175
>AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15667223-15668725 FORWARD
LENGTH=500
Length = 500
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 9 SWLCVL-GTKRQW---TCFKFW-ELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYM 63
SW ++ G ++W C K + ++ ++ T+ AL++ C G ++ + V
Sbjct: 188 SWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQT 247
Query: 64 ISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAF 123
+ G + L+ N ++ M+ +CG + DA ++F +D VSW ++I G ++A
Sbjct: 248 LHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAI 307
Query: 124 EQFLCM 129
E F M
Sbjct: 308 ELFELM 313
>AT1G18485.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6363172-6366084 FORWARD
LENGTH=970
Length = 970
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY ++ C G+ + V ++ G D++ N ++ + G + DA +LF M
Sbjct: 189 TYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM 248
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCR-SRTFATMVRA-SFCVSSSWF 156
PER+ VSW ++I D+G E+F M EE D AT+V C
Sbjct: 249 PERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREI 308
Query: 157 WL---------------NIVANTGLVDFYSKLG 174
L +V N L+D YSK G
Sbjct: 309 GLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG 341
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 42 ALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPER 101
+L++ C L+S+R K V ++I N E DL+ VL +++ CG + LF M ++
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560
Query: 102 DAVSWMTLIGRLVDSG 117
VSW T+I + +G
Sbjct: 561 SLVSWNTVITGYLQNG 576
>AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:12937253-12938836 REVERSE
LENGTH=527
Length = 527
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 56/107 (52%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
++++ D T+ ++ C G+ S++ + + ++ GF D+Y +N ++ M+ +
Sbjct: 183 YFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAK 242
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWE 131
CG ++ A +F +P +D VSW +++ + G EA + F M +
Sbjct: 243 CGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQ 289
>AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5656371-5658335 REVERSE LENGTH=654
Length = 654
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY ++ C GLR+I K + +++ + F D+Y ++ + +CG + A K+F +M
Sbjct: 105 TYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEM 164
Query: 99 PERDAVSWMTLI 110
P+RD V+W +I
Sbjct: 165 PKRDMVAWNAMI 176
>AT3G28660.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:10739400-10740914 REVERSE
LENGTH=504
Length = 504
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 57 KRVFNYMISNG-FEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVD 115
K++ +++ NG F D + VL ++V L+ DA K+F ++P+ D V W L+ V
Sbjct: 136 KQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVR 195
Query: 116 SGNYVEAFEQFLCMW------EEFNDCRSRTFATMVRA--------SFCVSSSWFWLNIV 161
G E E F M +EF+ + T V A F W ++
Sbjct: 196 CGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVF 255
Query: 162 ANTGLVDFYSKLG 174
T LVD Y+K G
Sbjct: 256 VGTALVDMYAKCG 268
>AT4G02750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:1221116-1223461 REVERSE
LENGTH=781
Length = 781
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F ++E + + S++ + ++ C + ++ K++ ++ G+E + N +L M+ +
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG + +A+ LF +M +D VSW T+I G F + R F +M
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG---------------FGEVALRFFESM 501
Query: 145 VRASFCVSSSWF--WLNIVANTGLVD 168
R + L+ ++TGLVD
Sbjct: 502 KREGLKPDDATMVAVLSACSHTGLVD 527
>AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23866053-23867711 FORWARD
LENGTH=552
Length = 552
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 47 CVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSW 106
C L K V +Y+I G E D+ + ++ M+ +CGL+ A LFA +PE++ VS+
Sbjct: 318 CAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEKNIVSF 377
Query: 107 MTLIGRLVDSGNYVEAFEQFLCMWE 131
+LI L G AFE+F + E
Sbjct: 378 NSLILGLGLHGFASTAFEKFTEILE 402
>AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9850594-9852682 FORWARD
LENGTH=659
Length = 659
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 38 STYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFAD 97
S++ + C L I K+ G++ D++ + ++ M+ CG + DA K+F +
Sbjct: 77 SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136
Query: 98 MPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFND 135
+P+R+ VSW ++I +GN ++A F + + ND
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEND 174
>AT1G16480.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5625742-5628605 REVERSE
LENGTH=928
Length = 928
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 59 VFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGN 118
+ ++ GF+ + N +L M+ G ++A+ +F MP +D +SW +L+ V+ G
Sbjct: 266 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 325
Query: 119 YVEAFEQFLCMWEEFNDCRSRTFATMVRASFC--------------VSSSWFWLNIVANT 164
++A M TF + + A F V S F+ I+ N
Sbjct: 326 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 385
Query: 165 GLVDFYSKLGRMKH 178
LV Y K+G M
Sbjct: 386 -LVSMYGKIGEMSE 398
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%)
Query: 58 RVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSG 117
+V ++ +G D+Y +LH++ GL+ + K+F +MP+R+ VSW +L+ D G
Sbjct: 63 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122
Query: 118 NYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLNIVANTGLVDFYSKL 173
E + + M E C + + ++ + + I+ SKL
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKL 178
>AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4954080-4955702 FORWARD
LENGTH=540
Length = 540
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 42 ALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPER 101
AL++ R I+ +R+FN + G + +L T N ++ + R G M A +LF MP+R
Sbjct: 304 ALLDMHAKCRDIQSARRIFNEL---GTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKR 360
Query: 102 DAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
+ VSW +LI +G A E F M
Sbjct: 361 NVVSWNSLIAGYAHNGQAALAIEFFEDM 388
>AT1G16480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5625843-5628656 REVERSE
LENGTH=937
Length = 937
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 59 VFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGN 118
+ ++ GF+ + N +L M+ G ++A+ +F MP +D +SW +L+ V+ G
Sbjct: 283 IHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGR 342
Query: 119 YVEAFEQFLCMWEEFNDCRSRTFATMVRASFC--------------VSSSWFWLNIVANT 164
++A M TF + + A F V S F+ I+ N
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402
Query: 165 GLVDFYSKLGRM 176
LV Y K+G M
Sbjct: 403 -LVSMYGKIGEM 413
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 58 RVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSG 117
+V ++ +G D+Y +LH++ GL+ + K+F +MP+R+ VSW +L+ D G
Sbjct: 80 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 139
Query: 118 NYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLNIVANTGLVDFYSKLG 174
E + + M E C + + ++ + + I+ SKL
Sbjct: 140 EPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 196
>AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19049853-19051445 REVERSE
LENGTH=530
Length = 530
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 64 ISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAF 123
I +G + L N ++HM+ CG + A KLF ++P+RD VSW ++I +V +G+ + A
Sbjct: 145 IKHGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAH 204
Query: 124 EQF 126
+ F
Sbjct: 205 KLF 207
>AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19252463-19254193 REVERSE
LENGTH=576
Length = 576
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
+++ Y+ +GF + N ++ + + DAHK+F +MP+ D +SW +L+ V S
Sbjct: 75 RQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQS 134
Query: 117 GNYVEAFEQFLCMWEEFNDCRSRTFAT---------------MVRASFCVSSSWFWL--- 158
G F++ +C++ E + RS F + C+ S L
Sbjct: 135 GR----FQEGICLFLELH--RSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLE 188
Query: 159 --NIVANTGLVDFYSKLGRM 176
N+V L+D Y K G M
Sbjct: 189 KGNVVVGNCLIDMYGKCGFM 208
>AT2G41080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:17132857-17134554 FORWARD
LENGTH=565
Length = 565
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F E+ G + T ++ + GLRS+ +++ Y I G E DL + + HM++R
Sbjct: 79 FREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR 138
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLI 110
G + D + MP R+ V+W TLI
Sbjct: 139 NGKLQDGEIVIRSMPVRNLVAWNTLI 164
>AT5G16860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:5543834-5546386 FORWARD
LENGTH=850
Length = 850
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ + C + S+R + + GF +++ N ++ M+ RC + DA K+F +M
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVS------ 152
D VSW ++I G A E F M EF CR + C S
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFG-CRPDNITLVNVLPPCASLGTHSL 247
Query: 153 ---------SSWFWLNIVANTGLVDFYSKLGRM 176
+S N+ LVD Y+K G M
Sbjct: 248 GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280
>AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8507794-8510038 REVERSE
LENGTH=722
Length = 722
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 42 ALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPER 101
++++ C L + K V + + NG E +L N +++M+ +CG + +F MP R
Sbjct: 349 SVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRR 408
Query: 102 DAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWLNIV 161
+ VSW ++I L G +A F M +E + TF ++ C S
Sbjct: 409 NVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYG--CSHSGLVEEGKK 466
Query: 162 ANTGLVDFYSKLGRMKH 178
+ D Y+ +++H
Sbjct: 467 IFASMTDEYNITPKLEH 483
>AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2766367-2768430 REVERSE
LENGTH=687
Length = 687
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 18 RQW----TCFKFWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLY 73
+QW + F ++E G A N+ TY+ L+ + + ++M GF+PD++
Sbjct: 128 KQWVKVESLFAYFETAGVAPNL--QTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVF 185
Query: 74 TMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEF 133
+ + V++ + G + DA +LF +M ER +T L+D + + + +W+
Sbjct: 186 SYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245
Query: 134 NDCRSRTFATMVRASFCVSSSWFWLNIVANTGLVDFYSKLGRMKHC 179
+ S + N+ + ++ SK GR+ C
Sbjct: 246 -----------------LEDSSVYPNVKTHNIMISGLSKCGRVDDC 274
>AT3G15930.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:5387444-5389690 FORWARD
LENGTH=687
Length = 687
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 9 SWLCVLGTKRQWTCFK-----FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYM 63
SW ++ + CF F E++ T +++ C L S+ + + Y+
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394
Query: 64 ISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAF 123
N + D+ N ++ M+ +CG A K+F DM +RD +W ++ L ++G EA
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 124 EQFLCMWE 131
+ F M +
Sbjct: 455 KVFFQMQD 462
>AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:18939262-18941034 FORWARD
LENGTH=590
Length = 590
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
++ L+ C +++ ++ M+ G E + ++H + +CGL+++A ++F +
Sbjct: 144 SFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAV 203
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSR--TFATMVRAS-------- 148
+RD V W L+ V +G EAF M + N R TF++++ A
Sbjct: 204 LDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSACRIEQGKQI 263
Query: 149 ----FCVSSSWFWLNIVANTGLVDFYSK 172
F VS + +I T L++ Y+K
Sbjct: 264 HAILFKVS---YQFDIPVATALLNMYAK 288
>AT1G74630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:28030521-28032452 FORWARD
LENGTH=643
Length = 643
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 19/153 (12%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
++A++ C + G + +F+ M+ + N +L +++ G + A ++F++M
Sbjct: 174 AWNAVITACFRGNDVAGAREIFDKMLVRNHT----SWNVMLAGYIKAGELESAKRIFSEM 229
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRA----------- 147
P RD VSW T+I + +G++ E+F F + + ++ A
Sbjct: 230 PHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 289
Query: 148 ---SFCVSSSWFWLNIVANTGLVDFYSKLGRMK 177
F + + W+ + N L+D YS+ G +
Sbjct: 290 ILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVP 321
>AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:16290141-16292612
REVERSE LENGTH=823
Length = 823
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNG-FEPDLYTMNRVLHMHVRCGLMLDAHKLFAD 97
T +L + L IR + V + + G F D+ N V+ M+ + GL+ A +F
Sbjct: 350 TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW 409
Query: 98 MPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSR-TFATMVRASFCVSS--- 153
+P D +SW T+I +G EA E + M EE ++ T+ +++ A +
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 154 ----------SWFWLNIVANTGLVDFYSKLGRMK 177
+ +L++ T L D Y K GR++
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLE 503
>AT2G04860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:1706787-1708865 REVERSE
LENGTH=692
Length = 692
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 56 IKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVD 115
+++V ++ +G + +Y +L+++++ G + A LF +MPERD V W LI
Sbjct: 69 VEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSR 128
Query: 116 SGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFC---------------VSSSWFWLNI 160
+G +A++ F+ M ++ + T ++ FC + S L+
Sbjct: 129 NGYECDAWKLFIVMLQQGFSPSATTLVNLL--PFCGQCGFVSQGRSVHGVAAKSGLELDS 186
Query: 161 VANTGLVDFYSKLGRM 176
L+ FYSK +
Sbjct: 187 QVKNALISFYSKCAEL 202
>AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:15665102-15667075 REVERSE
LENGTH=657
Length = 657
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 57 KRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDS 116
++V ++I GF+ D++ N ++ + +C + A K+F +M ERD VSW ++I S
Sbjct: 152 RQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQS 211
Query: 117 GNYVEAFEQFLCM 129
G++ + + + M
Sbjct: 212 GSFEDCKKMYKAM 224
>AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:876258-877547 REVERSE
LENGTH=429
Length = 429
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T ALV+ C + + R IK + +Y N EP + ++ + RCG ++ +F M
Sbjct: 184 TLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSM 243
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCM 129
+RD V+W +LI G+ A + F M
Sbjct: 244 EDRDVVAWSSLISAYALHGDAESALKTFQEM 274
>AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1384540-1386447 FORWARD
LENGTH=635
Length = 635
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 43 LVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERD 102
++ C ++ K +I E D+ +N +++ + +CG + A ++F M ER
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 103 AVSWMTLIGRLVDSGNYVEAFEQFLCMWEE------------FNDCRSRTFATMVRASFC 150
VSW T+IG + EA + FL M E + C A + C
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 151 VS-SSWFWLNIVANTGLVDFYSKLGRMK 177
+S + LN+ T L+D Y+K G +K
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIK 214
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 71 DLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEA---FEQFL 127
+LY +L ++ +CG++ DA ++F M ++ +V+W +++ V + NY EA + +
Sbjct: 196 NLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ 255
Query: 128 CMWEEFND-------CRSRTFATMVRAS---FCVSSSWFWLNIVANTGLVDFYSKLGRMK 177
M E N C A ++ + S F N+ + VD Y+K G ++
Sbjct: 256 RMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLR 315
Query: 178 HCH 180
+
Sbjct: 316 ESY 318
>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:1867129-1873194
REVERSE LENGTH=1322
Length = 1322
Score = 47.4 bits (111), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T +++ C L + K V Y + NGF D+Y + ++ M+ +CG + A +F ++
Sbjct: 1034 TMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNL 1093
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFCVSSSWFWL 158
P+++ W ++I L G EA + F M E + TF ++ A C +
Sbjct: 1094 PKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTA--CTHAGLVDE 1151
Query: 159 NIVANTGLVDFYSKLGRMKH 178
++D YS + ++H
Sbjct: 1152 GRRIYRSMIDDYSIVSNVEH 1171
>AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9791572-9792939 REVERSE
LENGTH=455
Length = 455
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
T+ ++ C+ SIR +V I GF D++ N ++ ++ +CG K+F M
Sbjct: 121 TFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKM 180
Query: 99 PERDAVSWMTLIGRLV-----DSGNYV--------------------------EAFEQFL 127
P R VSW T++ LV DS V EAF+ F
Sbjct: 181 PGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFR 240
Query: 128 CMWEEFNDCRSRTFATMVRASFCVSS-------------SWFWLNIVANTGLVDFYSKLG 174
M + T +++AS + S + F L+ T L+D YSK G
Sbjct: 241 RMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCG 300
Query: 175 RMK 177
++
Sbjct: 301 SLQ 303
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY+ L++ C ++ G +VF M ++ +PDL+T N ++ ++ RCGL +A +LF ++
Sbjct: 299 TYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL 358
Query: 99 PER----DAVSWMTLI---GRLVDSGNYVEAFEQFLCM 129
+ DAV++ +L+ R ++ E ++Q M
Sbjct: 359 ELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396
>AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1524071-1526047 REVERSE
LENGTH=658
Length = 658
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 39 TYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADM 98
TY + + C G + I +++ + G E +L + ++ M+ +CG + DA +F
Sbjct: 258 TYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFEST 317
Query: 99 PERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATMVRASFC-------- 150
E D VS ++ L +G+ EA + F+ M + + + + ++ SF
Sbjct: 318 TEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGK 377
Query: 151 -----VSSSWFWLNIVANTGLVDFYSKLGRM 176
V F N N GL++ YSK G +
Sbjct: 378 QLHSLVIKRKFSGNTFVNNGLINMYSKCGDL 408
>AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:18622044-18623834 FORWARD
LENGTH=596
Length = 596
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 9 SWLCVLGTKRQWTCFK-----FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYM 63
+W ++ Q CF F E+ T ++++ C + ++ +RV YM
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 64 ISNGFEPDLYTMNRVLHMHVRCGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAF 123
I N E + ++ ++V+CG + +A +F + E++ +W +I G +AF
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 124 EQFLCMWEEFNDCRSRTFATMVRA 147
+ F M TF ++ A
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSA 416
>AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:7247095-7248878 FORWARD
LENGTH=564
Length = 564
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%)
Query: 25 FWELEGDAANVGGSTYDALVNFCVGLRSIRGIKRVFNYMISNGFEPDLYTMNRVLHMHVR 84
F E+ + TY +++ C L ++ ++ + +L + +L ++ R
Sbjct: 101 FKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYAR 160
Query: 85 CGLMLDAHKLFADMPERDAVSWMTLIGRLVDSGNYVEAFEQFLCMWEEFNDCRSRTFATM 144
CG M +A F M ERD VSW +I + +F F M E TF ++
Sbjct: 161 CGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSL 220
Query: 145 VRASFCV 151
+RAS V
Sbjct: 221 LRASIVV 227