Miyakogusa Predicted Gene
- Lj1g3v4107110.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4107110.1 Non Chatacterized Hit- tr|K4BGI4|K4BGI4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,29.34,0.000000000000001,PPR,Pentatricopeptide repeat;
OS03G0849800 PROTEIN (FRAGMENT),NULL; FAMILY NOT NAMED,NULL; PPR:
pent,CUFF.31955.1
(544 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78293 weakly similar to UniRef100_A7PHH0 Cluster: Chr... 825 0.0
gnl|LJGI|FS325460 similar to UniRef100_A7PHH0 Cluster: Chromosom... 333 7e-91
gnl|LJGI|GO036292 weakly similar to UniRef100_Q9LP03 Cluster: F9... 127 8e-29
>gnl|LJGI|TC78293 weakly similar to UniRef100_A7PHH0 Cluster: Chromosome chr17
scaffold_16, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_16, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 1047
Score = 825 bits (416), Expect = 0.0
Identities = 513/544 (94%), Gaps = 1/544 (0%)
Strand = Plus / Plus
Query: 2 tgggctatgtagtcagattgagaagttggctttgtgtactaggtacaaagaggcaatgga 61
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 tgggctctgtagtcagattgagaagttggctttgtgtactaggtacaaagacgcaatgga 490
Query: 62 cctgttttaaattttgggaacttgaaggtgatgctgctaatgtgggtggtagcacttatg 121
||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct: 491 cctgtttgaaattttgggaacttgaaggtgatggtgctgatgtgggtggtagcaattata 550
Query: 122 atgctttggtgaatttttgtgttggcttgaggtcaattagagggattaagagggtgttta 181
|||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct: 551 atgctttggtgaatgtttgtgttggtttgagatcaattagaggggttaagagggtgttta 610
Query: 182 attatatgattagtaatgggtttgagcctgatctgtatacgatgaacagggttttgcata 241
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 611 attatatgattagtaatgggtttgagcctgatctgtatatgatgaacaaggttttgcata 670
Query: 242 tgcatgtgagatgtggtctcatgcttgatgcacacaagttgtttgctgatatgcctgaga 301
||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||
Sbjct: 671 tgcatgtgagatgtggtctcatgcttgatgcacgcaagctgtttgctaatatttttgaga 730
Query: 302 gagacgcggtttcttggatgaccttgatcggtagacttgtggactctgggaattatgttg 361
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 731 gagacgcggtttcctggatgaccttgatcggtggacttgtggactctgggaattatgttg 790
Query: 362 aagcttttgaacagtttttgtgcatgtgggaagagtttaatgactgcaggtctcgcactt 421
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 791 aagcttttgagcagtttttgtgcatgtgggaagagtttaatgacggcaggtctcgcactt 850
Query: 422 ttgccaccatggttcgggcatcattctgcgttagttcgtcatggttttggctga-atatt 480
|||||||||||||| ||||||||| ||||||||||||| |||||||||||| | |||||
Sbjct: 851 ttgccaccatggtttgggcatcatgttgcgttagttcgttatggttttggcttagatatt 910
Query: 481 gtggcaaacacagggcttgttgacttctatagcaaattgggtaggatgaaacattgtcat 540
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 911 gtgacaaacacagggcttgttgacttctatagcaaatggggtaggatgaaacattgtcat 970
Query: 541 taat 544
||||
Sbjct: 971 taat 974
>gnl|LJGI|FS325460 similar to UniRef100_A7PHH0 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 741
Score = 333 bits (168), Expect = 7e-91
Identities = 295/336 (87%), Gaps = 1/336 (0%)
Strand = Plus / Plus
Query: 9 tgtagtcagattgagaagttggctttgtgtactaggtacaaagaggcaatggacctgttt 68
||||||||||| |||||||||| |||||||| |||| | | ||||||||||| ||||||
Sbjct: 359 tgtagtcagatagagaagttgggtttgtgtaataggcatagggaggcaatggagctgttt 418
Query: 69 taaattttgggaacttgaaggtgatgctgctaatgtgggtggtagcacttatgatgcttt 128
||||||||| ||||||||||||| |||| ||||||||| |||||| |||||||||||
Sbjct: 419 gaaattttgg-aacttgaaggtgactgtgctgatgtgggtgctagcacatatgatgcttt 477
Query: 129 ggtgaatttttgtgttggcttgaggtcaattagagggattaagagggtgtttaattatat 188
||||||| |||||||||| ||||| || |||||||| |||||| |||||| ||||||||
Sbjct: 478 ggtgaatgtttgtgttggtttgagatcgattagaggtgttaagaaggtgttcaattatat 537
Query: 189 gattagtaatgggtttgagcctgatctgtatacgatgaacagggttttgcatatgcatgt 248
|||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||
Sbjct: 538 gattagtagtgggtttgagcctgatttgtatatgatgaacagggttttgcttatgcatgt 597
Query: 249 gagatgtggtctcatgcttgatgcacacaagttgtttgctgatatgcctgagagagacgc 308
|| ||||||||||||||| ||||| | |||| |||||| |||||||||||||||||| |
Sbjct: 598 gaaatgtggtctcatgctcgatgcgcgcaagctgtttggtgatatgcctgagagagatgt 657
Query: 309 ggtttcttggatgaccttgatcggtagacttgtgga 344
|||||| ||||||||| |||| || ||||||||||
Sbjct: 658 ggtttcgtggatgaccgtgattggcggacttgtgga 693
>gnl|LJGI|GO036292 weakly similar to UniRef100_Q9LP03 Cluster: F9C16.15; n=1;
Arabidopsis thaliana|Rep: F9C16.15 - Arabidopsis
thaliana (Mouse-ear cress), partial (3%)
Length = 651
Score = 127 bits (64), Expect = 8e-29
Identities = 110/124 (88%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 233 ttttgcatatgcatgtgagatgtggtctcatgcttgatgcacacaagttgtttgctgata 292
|||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 460 ttttgcttatacatgtcagatatggtctcatgcttgatgcacacaagttgtttgatgata 519
Query: 293 tgcctgagagagacgcggtttcttggatgaccttgatcggtagacttgt-ggactctggg 351
| ||| ||||||| | |||||| ||||||||| |||| ||| ||||||| ||||||||||
Sbjct: 520 ttccttagagagatgtggtttcctggatgaccgtgatgggtggacttgtgggactctggg 579
Query: 352 aatt 355
||||
Sbjct: 580 aatt 583