Miyakogusa Predicted Gene

Lj1g3v4103640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4103640.1 tr|A9TMT4|A9TMT4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_223708,55.81,6e-18,MRP-L27,Ribosomal protein L27/L41,
mitochondrial; MITOCHONDRIAL RIBOSOMAL PROTEIN
L41,NULL,NODE_66711_length_612_cov_47.429737.path2.1
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g10720.2                                                       167   2e-42
Glyma04g10720.1                                                       167   2e-42
Glyma06g10570.1                                                       161   2e-40
Glyma06g10570.2                                                       160   2e-40

>Glyma04g10720.2 
          Length = 92

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 83/91 (91%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60
          MPLGLILGIGRAFRRKR SSLDIL+SKRAPR YYKGKNCKPTGFHTRKGGYVV+ EKLP 
Sbjct: 1  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLTDFKLKPYVSQCPREVNTSEDSQTT 91
          YVVPDLTDFKLKPYVSQCP E NTSE SQT 
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEANTSEASQTA 91


>Glyma04g10720.1 
          Length = 92

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 83/91 (91%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60
          MPLGLILGIGRAFRRKR SSLDIL+SKRAPR YYKGKNCKPTGFHTRKGGYVV+ EKLP 
Sbjct: 1  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLTDFKLKPYVSQCPREVNTSEDSQTT 91
          YVVPDLTDFKLKPYVSQCP E NTSE SQT 
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEANTSEASQTA 91


>Glyma06g10570.1 
          Length = 91

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/88 (88%), Positives = 81/88 (92%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60
          MPLGLILGIGRAFRRKR SSLDIL+SKRAPR YYKGKNCKPTGFHTRKGGYVV+ EKLP 
Sbjct: 4  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 63

Query: 61 YVVPDLTDFKLKPYVSQCPREVNTSEDS 88
          YVVPDL+DFKLKPYVSQCP E NTSE S
Sbjct: 64 YVVPDLSDFKLKPYVSQCPIEANTSEVS 91


>Glyma06g10570.2 
          Length = 88

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/88 (88%), Positives = 81/88 (92%)

Query: 1  MPLGLILGIGRAFRRKRTSSLDILTSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPK 60
          MPLGLILGIGRAFRRKR SSLDIL+SKRAPR YYKGKNCKPTGFHTRKGGYVV+ EKLP 
Sbjct: 1  MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLTDFKLKPYVSQCPREVNTSEDS 88
          YVVPDL+DFKLKPYVSQCP E NTSE S
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIEANTSEVS 88