Miyakogusa Predicted Gene

Lj1g3v3404420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3404420.1 gi|187734272|gb|EU559710.2|.path1.1
         (408 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g116200.1 | ARID/bright DNA-binding domain protein | HC | ...   505   e-143
Medtr3g116200.2 | ARID/bright DNA-binding domain protein | HC | ...   388   e-108
Medtr5g024920.1 | AT-rich interactive domain protein | HC | chr5...   368   e-102
Medtr5g024920.2 | AT-rich interactive domain protein | HC | chr5...   268   8e-72
Medtr5g024920.3 | AT-rich interactive domain protein | HC | chr5...   268   8e-72

>Medtr3g116200.1 | ARID/bright DNA-binding domain protein | HC |
           chr3:54329792-54323677 | 20130731
          Length = 372

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/388 (68%), Positives = 293/388 (75%), Gaps = 45/388 (11%)

Query: 41  NSLAQIPKDEVMVDQGDDDNRIGDS-TPNNMLEVKTGSENQLELEDVKTPLHQELVTPKS 99
           +S  Q   D+ M+D   DD ++  + TP            QLE        HQ+   PK 
Sbjct: 10  HSQNQNAADQEMLDATADDTKVNSTLTP------------QLE--------HQQ---PKP 46

Query: 100 RERNVREMKSVLNDT--EVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLN 157
           + +NV E+ +  N+   E+  YDE G  +EREAFMKELE+FYR RSLEFKPPKFY  PLN
Sbjct: 47  KVKNVTEVNNNNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLN 106

Query: 158 CLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE 217
           CLKLWRAVIRLGGY+VVT SKLWR VGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE
Sbjct: 107 CLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE 166

Query: 218 IGELQLPVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVI 277
           IGELQLPVG   QPSSVEKET VYQAPGSG          MQGWHAQRL+GYGEV E  +
Sbjct: 167 IGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAV 226

Query: 278 KDKNFNPTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVK 337
           KDKNF+PT KREKNLK+IG INKQRTPS ++  ++AANI+GDRQLVTAVVD+GPPADWVK
Sbjct: 227 KDKNFSPTPKREKNLKNIGVINKQRTPSGMD--DRAANIEGDRQLVTAVVDIGPPADWVK 284

Query: 338 INVRET-----------------VRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPA 380
           INVRET                 VRVQSDPVGRLVITGMPE+ DNPWGITPFKKVVNLPA
Sbjct: 285 INVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPENADNPWGITPFKKVVNLPA 344

Query: 381 RIDPLQTSAVVSLHGRLFVRVPFEQGAV 408
           RIDPLQTSAVVSLHGRLFVRVPFEQGAV
Sbjct: 345 RIDPLQTSAVVSLHGRLFVRVPFEQGAV 372


>Medtr3g116200.2 | ARID/bright DNA-binding domain protein | HC |
           chr3:54329788-54324897 | 20130731
          Length = 312

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/306 (66%), Positives = 229/306 (74%), Gaps = 28/306 (9%)

Query: 41  NSLAQIPKDEVMVDQGDDDNRIGDS-TPNNMLEVKTGSENQLELEDVKTPLHQELVTPKS 99
           +S  Q   D+ M+D   DD ++  + TP            QLE        HQ+   PK 
Sbjct: 10  HSQNQNAADQEMLDATADDTKVNSTLTP------------QLE--------HQQ---PKP 46

Query: 100 RERNVREMKSVLNDT--EVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLN 157
           + +NV E+ +  N+   E+  YDE G  +EREAFMKELE+FYR RSLEFKPPKFY  PLN
Sbjct: 47  KVKNVTEVNNNNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLN 106

Query: 158 CLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE 217
           CLKLWRAVIRLGGY+VVT SKLWR VGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE
Sbjct: 107 CLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRE 166

Query: 218 IGELQLPVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVI 277
           IGELQLPVG   QPSSVEKET VYQAPGSG          MQGWHAQRL+GYGEV E  +
Sbjct: 167 IGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAV 226

Query: 278 KDKNFNPTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVK 337
           KDKNF+PT KREKNLK+IG INKQRTPS ++  ++AANI+GDRQLVTAVVD+GPPADWVK
Sbjct: 227 KDKNFSPTPKREKNLKNIGVINKQRTPSGMD--DRAANIEGDRQLVTAVVDIGPPADWVK 284

Query: 338 INVRET 343
           INVRET
Sbjct: 285 INVRET 290


>Medtr5g024920.1 | AT-rich interactive domain protein | HC |
           chr5:10083603-10075389 | 20130731
          Length = 604

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/314 (59%), Positives = 223/314 (71%), Gaps = 24/314 (7%)

Query: 111 LNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGG 170
           L+     D +E G   ++ AFMKELENF+RERS++FK PKFYGE LNCLKLWRAV+RLGG
Sbjct: 296 LDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKHPKFYGEWLNCLKLWRAVMRLGG 355

Query: 171 YDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQ 230
           Y+ VT  KLWR VGESF PPKTCTTVSWTFR FYEKALL+YE+H  + GEL +P+   P+
Sbjct: 356 YEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPE 415

Query: 231 PSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREK 290
           P +VE      Q   SG          M+GWH+QRLLG GEV +P+IKD+N     KREK
Sbjct: 416 PVNVEN-----QGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREK 470

Query: 291 NLKSIGAINKQRTPSVLEHVEKAANIDGDR-QLVTAVVDVGPPADWVKINV--------- 340
            LKSI  + K+++PS +++  KAA     R QL TAVVD+GP ADWVK+NV         
Sbjct: 471 QLKSIN-VPKRKSPSYMDNAVKAARSKPSRPQLGTAVVDIGPSADWVKVNVQKTKDCFEI 529

Query: 341 --------RETVRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVS 392
                   RE VRVQSDP GRLVI+G PEH +NPWG+TPFKKVV+LP+RIDP QTSAVV+
Sbjct: 530 YALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVT 589

Query: 393 LHGRLFVRVPFEQG 406
           LHG+LFVRVPFEQ 
Sbjct: 590 LHGQLFVRVPFEQS 603


>Medtr5g024920.2 | AT-rich interactive domain protein | HC |
           chr5:10083078-10075472 | 20130731
          Length = 636

 Score =  268 bits (685), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 166/234 (70%), Gaps = 7/234 (2%)

Query: 111 LNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGG 170
           L+     D +E G   ++ AFMKELENF+RERS++FK PKFYGE LNCLKLWRAV+RLGG
Sbjct: 371 LDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKHPKFYGEWLNCLKLWRAVMRLGG 430

Query: 171 YDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQ 230
           Y+ VT  KLWR VGESF PPKTCTTVSWTFR FYEKALL+YE+H  + GEL +P+   P+
Sbjct: 431 YEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPE 490

Query: 231 PSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREK 290
           P +VE      Q   SG          M+GWH+QRLLG GEV +P+IKD+N     KREK
Sbjct: 491 PVNVEN-----QGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREK 545

Query: 291 NLKSIGAINKQRTPSVLEHVEKAANIDGDR-QLVTAVVDVGPPADWVKINVRET 343
            LKSI  + K+++PS +++  KAA     R QL TAVVD+GP ADWVK+NV++T
Sbjct: 546 QLKSIN-VPKRKSPSYMDNAVKAARSKPSRPQLGTAVVDIGPSADWVKVNVQKT 598


>Medtr5g024920.3 | AT-rich interactive domain protein | HC |
           chr5:10083078-10075421 | 20130731
          Length = 636

 Score =  268 bits (685), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 166/234 (70%), Gaps = 7/234 (2%)

Query: 111 LNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGG 170
           L+     D +E G   ++ AFMKELENF+RERS++FK PKFYGE LNCLKLWRAV+RLGG
Sbjct: 371 LDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKHPKFYGEWLNCLKLWRAVMRLGG 430

Query: 171 YDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQ 230
           Y+ VT  KLWR VGESF PPKTCTTVSWTFR FYEKALL+YE+H  + GEL +P+   P+
Sbjct: 431 YEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPE 490

Query: 231 PSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREK 290
           P +VE      Q   SG          M+GWH+QRLLG GEV +P+IKD+N     KREK
Sbjct: 491 PVNVEN-----QGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREK 545

Query: 291 NLKSIGAINKQRTPSVLEHVEKAANIDGDR-QLVTAVVDVGPPADWVKINVRET 343
            LKSI  + K+++PS +++  KAA     R QL TAVVD+GP ADWVK+NV++T
Sbjct: 546 QLKSIN-VPKRKSPSYMDNAVKAARSKPSRPQLGTAVVDIGPSADWVKVNVQKT 598