Miyakogusa Predicted Gene
- Lj1g3v3404420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3404420.1 gi|187734272|gb|EU559710.2|.path1.1
(408 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76510.2 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 405 e-113
AT1G76510.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 405 e-113
AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 390 e-108
AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 374 e-104
AT2G17410.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 358 4e-99
AT2G17410.2 | Symbols: | ARID/BRIGHT DNA-binding domain-contain... 356 2e-98
AT1G76110.1 | Symbols: | HMG (high mobility group) box protein ... 52 7e-07
>AT1G76510.2 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:28708927-28712498 REVERSE LENGTH=434
Length = 434
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/379 (56%), Positives = 260/379 (68%), Gaps = 24/379 (6%)
Query: 45 QIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNV 104
QI +E + Q D R GD + G + + L + PL + +P E +V
Sbjct: 62 QIEANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGE-SNPLKGDPSSPHVPEESV 120
Query: 105 REMKS-VLNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWR 163
++ K+ +L+D E + DE GA ++EAF+KE+E F +E LEFK PKFYG+PLNCLKLWR
Sbjct: 121 KKWKTWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWR 180
Query: 164 AVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQL 223
AVI+LGGYDVVT SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH R+ GEL L
Sbjct: 181 AVIKLGGYDVVTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNL 240
Query: 224 PVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFN 283
P S +EKE + +QA GSG MQGWH+QRLLG GEV EP++K+K N
Sbjct: 241 PGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLN 300
Query: 284 PTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVKINVRET 343
+T ++KNLK+IG + KQ+T + ++ V + + ++Q V+DVGPPADWVKINVRET
Sbjct: 301 -STPKQKNLKNIG-VQKQKTTTGMDLV---FSHESEKQSTAEVIDVGPPADWVKINVRET 355
Query: 344 -----------------VRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQ 386
VRVQSDP GRLVI G PE +DNPWGITPFKKVVN PARIDPL
Sbjct: 356 KDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLH 415
Query: 387 TSAVVSLHGRLFVRVPFEQ 405
TSAVVSLHGRLFVRVPFEQ
Sbjct: 416 TSAVVSLHGRLFVRVPFEQ 434
>AT1G76510.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:28708927-28712498 REVERSE LENGTH=434
Length = 434
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/379 (56%), Positives = 260/379 (68%), Gaps = 24/379 (6%)
Query: 45 QIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNV 104
QI +E + Q D R GD + G + + L + PL + +P E +V
Sbjct: 62 QIEANEEVGGQNSVDGRNGDVDQSEKKITSDGGQEETTLGE-SNPLKGDPSSPHVPEESV 120
Query: 105 REMKS-VLNDTEVVDYDEPGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWR 163
++ K+ +L+D E + DE GA ++EAF+KE+E F +E LEFK PKFYG+PLNCLKLWR
Sbjct: 121 KKWKTWLLSDAEAREVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWR 180
Query: 164 AVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQL 223
AVI+LGGYDVVT SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH R+ GEL L
Sbjct: 181 AVIKLGGYDVVTTSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNL 240
Query: 224 PVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFN 283
P S +EKE + +QA GSG MQGWH+QRLLG GEV EP++K+K N
Sbjct: 241 PGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLN 300
Query: 284 PTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVKINVRET 343
+T ++KNLK+IG + KQ+T + ++ V + + ++Q V+DVGPPADWVKINVRET
Sbjct: 301 -STPKQKNLKNIG-VQKQKTTTGMDLV---FSHESEKQSTAEVIDVGPPADWVKINVRET 355
Query: 344 -----------------VRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQ 386
VRVQSDP GRLVI G PE +DNPWGITPFKKVVN PARIDPL
Sbjct: 356 KDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLH 415
Query: 387 TSAVVSLHGRLFVRVPFEQ 405
TSAVVSLHGRLFVRVPFEQ
Sbjct: 416 TSAVVSLHGRLFVRVPFEQ 434
>AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:28708681-28712498 REVERSE LENGTH=493
Length = 493
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/433 (51%), Positives = 270/433 (62%), Gaps = 56/433 (12%)
Query: 14 VDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEV 73
V +DTT D D + +P+ QI +E + Q D R GD +
Sbjct: 40 VPEDTT---HTLDSDVHLSDAPIA------NQIEANEEVGGQNSVDGRNGDVDQSEKKIT 90
Query: 74 KTGSENQLELEDVKTPLHQELVTPKSRERNVREMKS-VLNDTEVVDYDEPGASLEREAFM 132
G + + L + PL + +P E +V++ K+ +L+D E + DE GA ++EAF+
Sbjct: 91 SDGGQEETTLGE-SNPLKGDPSSPHVPEESVKKWKTWLLSDAEAREVDEAGAPQDQEAFI 149
Query: 133 KELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKT 192
KE+E F +E LEFK PKFYG+PLNCLKLWRAVI+LGGYDVVT SKLWRQVGESFHPPKT
Sbjct: 150 KEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGESFHPPKT 209
Query: 193 CTTVSWTFRIFYEK-----------------------ALLEYEKHKREIGELQLPVGVFP 229
CTTVSWTFRIFYEK ALLEYEKH R+ GEL LP
Sbjct: 210 CTTVSWTFRIFYEKVNFIFGLSTEYALILMRLYLFSLALLEYEKHLRQNGELNLPGSASL 269
Query: 230 QPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKRE 289
S +EKE + +QA GSG MQGWH+QRLLG GEV EP++K+K N +T ++
Sbjct: 270 PSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLN-STPKQ 328
Query: 290 KNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVKINVRET------ 343
KNLK+IG + KQ+T + ++ V + + ++Q V+DVGPPADWVKINVRET
Sbjct: 329 KNLKNIG-VQKQKTTTGMDLV---FSHESEKQSTAEVIDVGPPADWVKINVRETKDCFEI 384
Query: 344 -----------VRVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVS 392
VRVQSDP GRLVI G PE +DNPWGITPFKKVVN PARIDPL TSAVVS
Sbjct: 385 FALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVS 444
Query: 393 LHGRLFVRVPFEQ 405
LHGRLFVRVPFE
Sbjct: 445 LHGRLFVRVPFEH 457
>AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:7277209-7280635 REVERSE LENGTH=398
Length = 398
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/361 (54%), Positives = 245/361 (67%), Gaps = 23/361 (6%)
Query: 62 IGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDE 121
+GD NN + G+ ++ + KT Q +++PK+ N ++ K+ L D+E DE
Sbjct: 44 LGDGQANNGHGMNGGAVGVVDHSERKTRRVQ-MLSPKTEGENAKKRKTWLLDSEAQGTDE 102
Query: 122 PGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWR 181
G +E+ AF++E+E FY+E LEFKPPKFYG+PLN LKLWRAV+ LGGY+VVT +KLWR
Sbjct: 103 AGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWR 162
Query: 182 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVY 241
QVGESF+PPKTCTTVS+TFR FYEKALLEYEK R GEL LP SSVEKE + +
Sbjct: 163 QVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKEPSSH 222
Query: 242 QAPGSGXXXXXXXXXXMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKNLKSIGAINKQ 301
Q GSG MQGWHAQRL+G GEV P +KDK T K +K LKSIG + K
Sbjct: 223 QGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPKHKK-LKSIG-LQKH 280
Query: 302 RTPSVLEHVEKAANIDGDRQLVTAVVDVGPPADWVKINVRET-----------------V 344
+ + ++HV + D+QL VVDVGP ADWVKINV+E+ V
Sbjct: 281 KQQTSMDHV---VTNEADKQLAAEVVDVGPVADWVKINVKESKDSFEIFALVPGLLRKEV 337
Query: 345 RVQSDPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFE 404
R+QSDP G++VITG PE +DNPWGITPFKK+V+L ARIDPL TSAV+S+HGRLF+RVPFE
Sbjct: 338 RIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPFE 397
Query: 405 Q 405
Q
Sbjct: 398 Q 398
>AT2G17410.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr2:7559869-7563474 FORWARD LENGTH=786
Length = 786
Score = 358 bits (919), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/339 (55%), Positives = 228/339 (67%), Gaps = 27/339 (7%)
Query: 85 DVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRERSL 144
D+ +H+ + TP + +R +S L D + D +E G ++ AFMKEL++F+RER++
Sbjct: 455 DLNNGVHKIVRTPPVFDGTMRAKRSFLLD-DASDGNESGTEEDQSAFMKELDSFFRERNM 513
Query: 145 EFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFY 204
+FKPPKFYGE LNCLKLWRAV RLGGYD VTGSKLWRQVGESF PPKTCTTVSWTFR FY
Sbjct: 514 DFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFY 573
Query: 205 EKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQ 264
EKALLEYE+HK GELQ+P+ + +P +++ QA GSG MQGWH+Q
Sbjct: 574 EKALLEYERHKVSEGELQIPLPLELEPMNIDN-----QASGSGRARRDAASRAMQGWHSQ 628
Query: 265 RLLGYGEVAEPVIKDKNFNPTTKREKNLKSI-GAINKQRTPSVLEHVEKAANIDGDRQLV 323
RL G GEV++P IKDKN KREK + + G + ++R EH K A L
Sbjct: 629 RLNGNGEVSDPAIKDKNLVLHQKREKQIGTTPGLLKRKR---AAEHGAKNAIHVSKSMLD 685
Query: 324 TAVVDVGPPADWVKIN-----------------VRETVRVQSDPVGRLVITGMPEHIDNP 366
VVDVGPPADWVKIN VRE VRVQSDP GRLVI+G PE+ NP
Sbjct: 686 VTVVDVGPPADWVKINVQRTQDCFEVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNP 745
Query: 367 WGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQ 405
WG TPFKKVV+LP RIDP TSAVV+L+G+LFVRVP EQ
Sbjct: 746 WGATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPLEQ 784
>AT2G17410.2 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr2:7559869-7563474 FORWARD LENGTH=780
Length = 780
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/338 (55%), Positives = 228/338 (67%), Gaps = 31/338 (9%)
Query: 85 DVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRERSL 144
D+ +H+ + TP + +R +S L D + D +E G ++ AFMKEL++F+RER++
Sbjct: 455 DLNNGVHKIVRTPPVFDGTMRAKRSFLLD-DASDGNESGTEEDQSAFMKELDSFFRERNM 513
Query: 145 EFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFY 204
+FKPPKFYGE LNCLKLWRAV RLGGYD VTGSKLWRQVGESF PPKTCTTVSWTFR FY
Sbjct: 514 DFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFY 573
Query: 205 EKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQAPGSGXXXXXXXXXXMQGWHAQ 264
EKALLEYE+HK GELQ+P+ + +P +++ QA GSG MQGWH+Q
Sbjct: 574 EKALLEYERHKVSEGELQIPLPLELEPMNIDN-----QASGSGRARRDAASRAMQGWHSQ 628
Query: 265 RLLGYGEVAEPVIKDKNFNPTTKREKNLKSIGAINKQRTPSVLEHVEKAANIDGDRQLVT 324
RL G GEV++P IKDKN KREK + + TP +L+ A ++ +L
Sbjct: 629 RLNGNGEVSDPAIKDKNLVLHQKREKQIGT--------TPGLLKRKRAAEHVVVFPRLDV 680
Query: 325 AVVDVGPPADWVKIN-----------------VRETVRVQSDPVGRLVITGMPEHIDNPW 367
VVDVGPPADWVKIN VRE VRVQSDP GRLVI+G PE+ NPW
Sbjct: 681 TVVDVGPPADWVKINVQRTQDCFEVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPW 740
Query: 368 GITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQ 405
G TPFKKVV+LP RIDP TSAVV+L+G+LFVRVP EQ
Sbjct: 741 GATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPLEQ 778
>AT1G76110.1 | Symbols: | HMG (high mobility group) box protein
with ARID/BRIGHT DNA-binding domain |
chr1:28555287-28557465 REVERSE LENGTH=338
Length = 338
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 115 EVVDYDEPGASLE-----REAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLG 169
++ +Y EP A E F L F+ S +F P G+ L+ L+ V R G
Sbjct: 23 KIKEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRG 82
Query: 170 GYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHK--REIGELQLPVGV 227
GY+ V K WR+VG F T T+ S+ R Y L YE+ G L P+
Sbjct: 83 GYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIAT 142
Query: 228 FPQPSSVEKETTV 240
F S KE +
Sbjct: 143 FHANPSTSKEMAL 155