Miyakogusa Predicted Gene

Lj1g3v3022300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3022300.1 Non Chatacterized Hit- tr|I1EYB9|I1EYB9_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica
PE,28.42,3e-18,seg,NULL; Eukaryotic type KH-domain (KH-domain type
I),NULL; no description,NULL; SUBFAMILY NOT NAME,CUFF.29940.1
         (625 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29390.1 | Symbols: RIK | RS2-interacting KH protein | chr3:1...   325   4e-89

>AT3G29390.1 | Symbols: RIK | RS2-interacting KH protein |
           chr3:11289675-11294524 FORWARD LENGTH=578
          Length = 578

 Score =  325 bits (834), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 207/441 (46%), Positives = 250/441 (56%), Gaps = 73/441 (16%)

Query: 92  IQDELVIAREIIINDAESSIRYKLTKCQTQEEIQRCTGTIVITRGKYRPPTAPPDGEKPL 151
           IQDE++IAREI+INDAE+S+R++LTK  TQE+IQR TG +VITRGKYRPP APPDGEKPL
Sbjct: 82  IQDEVIIAREIVINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPL 141

Query: 152 YLHISAGAHI--KETAERILVVDRAAAMIEEMLRQGQNSPSISTASPSALANGVTMPSAC 209
           YLHISA A +  KET ERIL VDRAAAMIEEM++Q     SIS      L   V M S C
Sbjct: 142 YLHISAAAQLQLKETTERILAVDRAAAMIEEMMKQK----SISQIGSVGLQT-VKMLSTC 196

Query: 210 VFLGFDADPSLNIVARIRGPNDQYINHIMNETGVTVTLRGRGSGNDECMSGEDGQQPMHL 269
           V+LGF+ADPS N+ ARIRGPNDQYINHIMNETG TV LRGRGSG+ E   G++ Q P+HL
Sbjct: 197 VYLGFEADPSSNVAARIRGPNDQYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHL 256

Query: 270 FLSSNNLKSLEDARCLAENLLDTISVECGASRVPSCKVYSAVPPPQQAYTAVPPPQQVYT 329
            LS +N KS++DA+ LAENL+DTISVE GASRV S K                       
Sbjct: 257 LLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSK----------------------- 293

Query: 330 AFPPPQQVYNGPSLSKQISTAISPPQQVYRAVPPPQQLLAGVQSSGVELEGIAGLTTNSL 389
                                      VY AVPPPQQL++G   S  E + +  ++T  L
Sbjct: 294 ---------------------------VYGAVPPPQQLISGAPGSDQENQNL--ISTYGL 324

Query: 390 SSNVAPTPVPPASLIGVPGV-ATTLM-SATMSQSTGYLSSGPQANMIGYTLPSVXXXXXX 447
            +++ P   PP ++   P   AT+L     + QS G  + GP   + G T          
Sbjct: 325 MTSI-PITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNGGPSQPVAGGT--------SY 375

Query: 448 XXXXXXXPQATPMQQVALALRHXXXXXXXXXXXXXXXNGESKSTTSSNP--EKERRQPQR 505
                  PQATP+QQVA  L+                   S S  S N   E ERR P++
Sbjct: 376 SGYAGIYPQATPLQQVAQVLKQSISPVISTVPPTML-TATSLSIPSDNASNEMERRPPRK 434

Query: 506 RKFQELPVGSKSTTKLNQGLE 526
           RKFQELP   K   K  Q  E
Sbjct: 435 RKFQELPADCKVPEKDKQQSE 455