Miyakogusa Predicted Gene
- Lj1g3v2979170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2979170.1 Non Chatacterized Hit- tr|I1LDE8|I1LDE8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,29.62,7e-18,RNA-binding domain, RBD,NULL; seg,NULL; RNA
recognition motif,RNA recognition motif domain; RRM_5,NU,CUFF.29790.1
(1335 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57645 similar to UniRef100_Q38JI2 Cluster: Polypyrimi... 1033 0.0
gnl|LJGI|BW600619 similar to UniRef100_Q2XTB3 Cluster: Polypyrim... 737 0.0
gnl|LJGI|FS357468 similar to UniRef100_Q2XTB3 Cluster: Polypyrim... 504 e-142
gnl|LJGI|GO012400 homologue to UniRef100_A7QTW3 Cluster: Chromos... 52 9e-06
>gnl|LJGI|TC57645 similar to UniRef100_Q38JI2 Cluster: Polypyrimidine
tract-binding-like; n=1; Solanum tuberosum|Rep:
Polypyrimidine tract-binding-like - Solanum tuberosum
(Potato), partial (81%)
Length = 1697
Score = 1033 bits (521), Expect = 0.0
Identities = 935/1073 (87%)
Strand = Plus / Plus
Query: 22 cagttccgatacactcaaaccccttccaaggttcttcaccttcgcaaccttccatgggag 81
|||||||| |||| |||||| ||||| ||||| || ||| | ||||||||||||||||||
Sbjct: 130 cagttccggtacaatcaaacaccttcgaaggtgctgcacttccgcaaccttccatgggag 189
Query: 82 tgctccgaagaggagctcattgagctcggtaaacccttcggtaagatcgtcaacaccaag 141
||| | ||||| |||||| || | || || |||||||| || || | |||||||||
Sbjct: 190 tgcacggaagacgagctcgttcaactgtgttgccccttcggccaggtcatgaacaccaag 249
Query: 142 tgcaatgtcggcgccaatcgcaaccaagctttcgttgaattcgcagatctaaatcaagcc 201
|||||||| ||||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct: 250 tgcaatgttggcgccaataagaatcaagcttttgttgaattcggggatctaaatcaagcc 309
Query: 202 atttcgatggtttcatattatgcttcatcttcagaacctgctcaggtccgtggtaaaagc 261
||||| ||||||||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct: 310 atttcaatggtttcatattatgcttcatcttcagagcctgctcaggttcgaggcaaaact 369
Query: 262 gtttatatacagtattctaatagacacgaaattgtgaacaataaaagccctggagatatt 321
||||| || || ||||| |||||||| |||||||| ||||||||| |||||||||| |
Sbjct: 370 gtttacattcaatattccaatagacatgaaattgtcaacaataaagcccctggagatgtc 429
Query: 322 cccggcaatgtgttgttggtcactattgaaggtgtggaagctggggatgtgagcatcgat 381
|| || ||||| ||| | || || || ||||| || |||||||| ||||||| ||||||
Sbjct: 430 cctggaaatgtcttgctagtaaccatggaaggcgtagaagctggagatgtgacaatcgat 489
Query: 382 gttatccacttggtgttttctgcttttggctttgttcacaaaattgctactttcgaaaag 441
||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||
Sbjct: 490 gttatccacttggtgttttctgcatttggctttgtacacaaaatcgctacatttgaaaag 549
Query: 442 actgcaggtttccaggctctgattcagtacactgatgctgatactgcttttcaagctagg 501
|||||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||||
Sbjct: 550 actgcaggtttccaggctttgattcagttcactgatgctgagactgcttctttggctagg 609
Query: 502 gacgcattggatggaagaagcataccaagatacctgcttccagatcatgttggttcttgt 561
| ||| ||||||||||||||||||| || ||| |||| ||| | |||||||||||||||
Sbjct: 610 aatgcactggatggaagaagcatacccagttacttgctcccacagcatgttggttcttgt 669
Query: 562 aatttgcgtatttcatactcagcacatagagatctgaatatcaaatttcaatcaaatcgc 621
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 670 aacttgcgtatttcatactcagcacatagagatctcaatatcaaattccaatctaatcgc 729
Query: 622 agcagggactatacaaatcctatgcttcctgttaatcttactgctattgaaggggcagga 681
||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct: 730 agcagggactacacaaatccaatgcttcctgttaatcagactgctattgacggggcatta 789
Query: 682 cagcctgctgttggtcctgatgggaagaagaaagaacctgagagcaatgtgcttttggct 741
||||||| |||||||||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct: 790 cagcctgttgttggtcctgacgggaagagaaccgaatctgagagcaatgtgcttttggct 849
Query: 742 tccattgaaaatatgcagtatgctgttacagttgatgtccttcacacggtgttctcttca 801
| ||||||||||||||||| ||||| || || || || |||||||||||||| ||| ||
Sbjct: 850 acaattgaaaatatgcagtacgctgtcactgtggaagttcttcacacggtgttttctgca 909
Query: 802 tttggtactgtccagaaaattgctatttttgaaaagaacggtcaaacccaggcactgatt 861
||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 910 tttggcactgtgcagaaaattgctatatttgaaaagaatggtcaaactcaggcactgatt 969
Query: 862 caataccctgatgtcataacagcagctgctgctagagaagctttagagggacattgcata 921
|||||||||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||
Sbjct: 970 caataccctgatgtcacaacagcagcagctgccaaagaagctttagaggggcattgcata 1029
Query: 922 tatgatggtggctattgtaagcttcatctaacatattctcgtcatactgatctcaatgtg 981
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1030 tatgatggtggctattgtaagcttcatctaacatactctcgtcatactgatctcaatgta 1089
Query: 982 aaggctttcagtgacaaaagtagagactatacagtgccagatcctagtgtgctttcatca 1041
||||||| |||||||||||| ||||||||||||||| ||||||||| | | | || ||
Sbjct: 1090 aaggcttacagtgacaaaagcagagactatacagtgttggatcctagtctccgtgcagca 1149
Query: 1042 caagttcctgccacagcctggcaaaatcctcaggctgcacctatgtaccctgg 1094
||||||||||| ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 1150 caagttcctgcaacagcatggccgaatcctcaggctgctcctatgtaccctgg 1202
>gnl|LJGI|BW600619 similar to UniRef100_Q2XTB3 Cluster: Polypyrimidine tract-binding
protein-like; n=1; Solanum tuberosum|Rep: Polypyrimidine
tract-binding protein-like - Solanum tuberosum (Potato),
partial (29%)
Length = 445
Score = 737 bits (372), Expect = 0.0
Identities = 378/380 (99%)
Strand = Plus / Plus
Query: 373 agcatcgatgttatccacttggtgttttctgcttttggctttgttcacaaaattgctact 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 agcatcgatgttatccacttggtgttttctgcttttggctttgttcacaaaattgctact 125
Query: 433 ttcgaaaagactgcaggtttccaggctctgattcagtacactgatgctgatactgctttt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttcgaaaagactgcaggtttccaggctctgattcagtacactgatgctgatactgctttt 185
Query: 493 caagctagggacgcattggatggaagaagcataccaagatacctgcttccagatcatgtt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 caagctagggacgcattggatggaagaagcataccaagatacctgcttccagatcatgtt 245
Query: 553 ggttcttgtaatttgcgtatttcatactcagcacatagagatctgaatatcaaatttcaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggttcttgtaatttgcgtatttcatactcagcacatagagatctgaatatcaaatttcaa 305
Query: 613 tcaaatcgcagcagggactatacaaatcctatgcttcctgttaatcttactgctattgaa 672
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 tcaaatcgcagcagggactatacaaatcctatgcttcccgttaatcttactgctattgaa 365
Query: 673 ggggcaggacagcctgctgttggtcctgatgggaagaagaaagaacctgagagcaatgtg 732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 366 ggggcaggacagcctgctgttggtcctgatgggaagaagaaagaacctgacagcaatgtg 425
Query: 733 cttttggcttccattgaaaa 752
||||||||||||||||||||
Sbjct: 426 cttttggcttccattgaaaa 445
>gnl|LJGI|FS357468 similar to UniRef100_Q2XTB3 Cluster: Polypyrimidine tract-binding
protein-like; n=1; Solanum tuberosum|Rep: Polypyrimidine
tract-binding protein-like - Solanum tuberosum (Potato),
partial (39%)
Length = 614
Score = 504 bits (254), Expect = e-142
Identities = 386/430 (89%)
Strand = Plus / Minus
Query: 509 tggatggaagaagcataccaagatacctgcttccagatcatgttggttcttgtaatttgc 568
||||||||||||||||||| || ||| |||| ||| | ||||||||||||||||| ||||
Sbjct: 592 tggatggaagaagcatacccagttacttgctcccacagcatgttggttcttgtaacttgc 533
Query: 569 gtatttcatactcagcacatagagatctgaatatcaaatttcaatcaaatcgcagcaggg 628
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 532 gtatttcatactcagcacatagagatctcaatatcaaattccaatctaatcgcagcaggg 473
Query: 629 actatacaaatcctatgcttcctgttaatcttactgctattgaaggggcaggacagcctg 688
|||| |||||||| |||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 472 actacacaaatccaatgcttcctgttaatcagactgctattgacggggcattacagcctg 413
Query: 689 ctgttggtcctgatgggaagaagaaagaacctgagagcaatgtgcttttggcttccattg 748
|||||||||||| ||||||| | ||| ||||||||||||||||||||||| | ||||
Sbjct: 412 ttgttggtcctgacgggaagagaaccgaatctgagagcaatgtgcttttggctacaattg 353
Query: 749 aaaatatgcagtatgctgttacagttgatgtccttcacacggtgttctcttcatttggta 808
||||||||||||| ||||| || || || || |||||||||||||| ||| ||||||| |
Sbjct: 352 aaaatatgcagtacgctgtcactgtggaagttcttcacacggtgttttctgcatttggca 293
Query: 809 ctgtccagaaaattgctatttttgaaaagaacggtcaaacccaggcactgattcaatacc 868
|||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 292 ctgtgcagaaaattgctatatttgaaaagaatggtcaaactcaggcactgattcaatacc 233
Query: 869 ctgatgtcataacagcagctgctgctagagaagctttagagggacattgcatatatgatg 928
||||||||| ||||||||| ||||| | ||||||||||||||| ||||||||||||||||
Sbjct: 232 ctgatgtcacaacagcagcagctgccaaagaagctttagaggggcattgcatatatgatg 173
Query: 929 gtggctattg 938
||||||||||
Sbjct: 172 gtggctattg 163
Score = 99.6 bits (50), Expect = 4e-20
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 985 gctttcagtgacaaaagtagagactatacagtgccagatcctagtgtgctttcatcacaa 1044
|||| |||||||||||| ||||||||||||||| ||||||||| | | | || |||||
Sbjct: 163 gcttacagtgacaaaagcagagactatacagtgttggatcctagtctccgtgcagcacaa 104
Query: 1045 gttcctgccacagcctggcaaaatcctcaggctgcacctatgtaccctgg 1094
|||||||| ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 103 gttcctgcaacagcatggccgaatcctcaggctgctcctatgtaccctgg 54
>gnl|LJGI|GO012400 homologue to UniRef100_A7QTW3 Cluster: Chromosome undetermined
scaffold_171, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome undetermined scaffold_171,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (16%)
Length = 694
Score = 52.0 bits (26), Expect = 9e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 130 gtcaacaccaagtgcaatgtcggcgccaatcgcaaccaagctttcgttgaattcgcagat 189
||||||||||| |||||||| || || ||||| || |||||||| | ||||| ||||||
Sbjct: 312 gtcaacaccaaatgcaatgttggagctaatcgaaatcaagcttttatcgaatttgcagat 371
Query: 190 ctaaatcaagccatttcgatggtttc 215
| |||||||| ||| ||||| ||||
Sbjct: 372 ttgaatcaagctattgcgatgatttc 397