Miyakogusa Predicted Gene

Lj1g3v2975940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2975940.1 Non Characterized Hit- tr|H9J1B3|H9J1B3_BOMMO
Uncharacterized protein OS=Bombyx mori GN=Bmo.7244
PE=,38.71,7e-19,SUBFAMILY NOT NAMED,NULL; RP42
RELATED,Defective-in-cullin neddylation protein;
Cullin_binding,Poten,CUFF.29778.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g010920.1 | cullin-binding domain protein | HC | chr7:2807...   483   e-136
Medtr2g064415.1 | defective in cullin neddylation protein, putat...    91   1e-18
Medtr4g008540.1 | defective in cullin neddylation protein, putat...    52   6e-07

>Medtr7g010920.1 | cullin-binding domain protein | HC |
           chr7:2807228-2801017 | 20130731
          Length = 308

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/314 (75%), Positives = 268/314 (85%), Gaps = 8/314 (2%)

Query: 1   MDASSRIDIFEIYRRYCDIRSGHAYVVGEEGYRQHSDFHKAKVSREALTQLSKLVESRVS 60
           MDAS   DIF IYRR+CDI+SGHA+VVGEEGYRQ SDF KAK SREALTQLSKLVESRV 
Sbjct: 1   MDAS-LCDIFNIYRRFCDIKSGHAFVVGEEGYRQDSDFQKAKFSREALTQLSKLVESRVC 59

Query: 61  TGVTIFDELSMLMSRLDLMVDFSAFSRFYEFVFFMCRENGQKNITVSRAVTAWKLVLAGR 120
           TG TIFDELS+LMSRL LM  FS FSRFYEFVFFMCRENGQKNITVS+A+TAWKLVL GR
Sbjct: 60  TGATIFDELSILMSRLGLMATFSEFSRFYEFVFFMCRENGQKNITVSKALTAWKLVLNGR 119

Query: 121 FPLLHQWCEFVEKNQRYNISEDTWQQVLAFTWCTRDNLEAYDPEGAWPVLIDDFVEHMYR 180
           FPLL  WC+FVEKNQRYNISEDTWQQVL+F+ CTRD+L+AYDPEGAWPVLIDDFVEHMYR
Sbjct: 120 FPLLQPWCDFVEKNQRYNISEDTWQQVLSFSICTRDSLDAYDPEGAWPVLIDDFVEHMYR 179

Query: 181 IQGSYYDYSNFRCNCGDTESQSCVLEDPLPGLRSVSVLKRKLPEETSNNDMEHSSASDEL 240
             GSYY+ SN  CNCGD ES S      +PGL+S + LKRKL EE   +DME+S +S+E+
Sbjct: 180 QPGSYYENSNIHCNCGDPESLS------IPGLKSFAGLKRKLAEEARKDDMEYSYSSEEM 233

Query: 241 ISSNCKRSRAHGAVDWEDHDPLGNTSEDCMETSRQNSPLCSSKSQCAVEGCLSKGFAGLL 300
            ++NCK+SRA+G VD ED +P GN +E+CMETSRQ+SPLCSSKSQC+VEG LSKGFAGLL
Sbjct: 234 NTANCKKSRAYGVVDCED-NPQGNAAEECMETSRQSSPLCSSKSQCSVEGSLSKGFAGLL 292

Query: 301 STRSFVQFGRERRA 314
           ST S+++FGRERR 
Sbjct: 293 STSSYLRFGRERRG 306


>Medtr2g064415.1 | defective in cullin neddylation protein, putative
           | HC | chr2:27316373-27324416 | 20130731
          Length = 259

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 79  MVDFSAFSRFYEFVFFMCRENGQKNITVSRAVTAWKLVLAGR-FPLLHQWCEFVEKNQRY 137
           + D   F   Y F F   +E GQK++ +  A+  W+L+ A + +PL+  WC+F++     
Sbjct: 141 LKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVEHWCQFLQARHNK 200

Query: 138 NISEDTWQQVLAFTWCTRDNLEAYDPEGAWPVLIDDFVEHM 178
            IS DTW Q+L F      NL  YD EGAWP LID+FV+++
Sbjct: 201 AISRDTWSQLLEFAKTVSSNLSDYDAEGAWPYLIDEFVDYL 241


>Medtr4g008540.1 | defective in cullin neddylation protein, putative
           | HC | chr4:1579261-1574469 | 20130731
          Length = 228

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 83  SAFSRFYEFVFFMC-RENGQKNITVSRAVTAWKLVLAGRFPL-LHQWCEFVEKNQRYNI- 139
           S FS FY + F  C  E  QK+I +        LVL   FP  +  + E+++    Y + 
Sbjct: 123 SNFSDFYSYAFQYCLTEEKQKSIDIESICELLSLVLGSTFPAQVSLFVEYLKNQNDYKVV 182

Query: 140 SEDTWQQVLAF-TWCTRDNLEAYDPEGAWPVLIDDFVEHM 178
           + D W     F    +  +L  YDPE AWP+++D+FVE +
Sbjct: 183 NMDQWMGFFRFCNEISFPSLSDYDPELAWPLILDNFVEWL 222