Miyakogusa Predicted Gene

Lj1g3v2975940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2975940.1 Non Chatacterized Hit- tr|H9J1B3|H9J1B3_BOMMO
Uncharacterized protein OS=Bombyx mori GN=Bmo.7244
PE=,38.71,7e-19,SUBFAMILY NOT NAMED,NULL; RP42
RELATED,Defective-in-cullin neddylation protein;
Cullin_binding,Poten,CUFF.29778.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28970.1 | Symbols: AAR3 | Domain of unknown function (DUF298...   298   3e-81
AT3G12760.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Defective-...    93   2e-19

>AT3G28970.1 | Symbols: AAR3 | Domain of unknown function (DUF298) |
           chr3:10987970-10989782 REVERSE LENGTH=295
          Length = 295

 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 208/314 (66%), Gaps = 42/314 (13%)

Query: 3   ASSRIDIFEIYRRYCDIRSGHAYVV-----GEEGYRQHSDFHKAKVSREALTQLSKLVES 57
            S+R DIFEIYRR+C IRSG          GEE  R         +S+EA+TQL  LVE+
Sbjct: 6   VSARFDIFEIYRRFCAIRSGQQLCNKKPCDGEESQR-------FNLSKEAITQLLYLVEN 58

Query: 58  RVSTGVTIFDELSMLMSRLDLMVDFSAFSRFYEFVFFMCRENGQKNITVSRAVTAWKLVL 117
           +     +IFDEL  LMSRLDLMVDF+ F+ FY+FVFFMCRENGQKNIT+SRA+TAWKLVL
Sbjct: 59  KFQARNSIFDELFKLMSRLDLMVDFTEFTCFYDFVFFMCRENGQKNITISRAITAWKLVL 118

Query: 118 AGRFPLLHQWCEFVEKNQRYNISEDTWQQVLAFTWCTRDNLEAYDPEGAWPVLIDDFVEH 177
           AGRF LL++WC+F+EKNQR+NISEDTWQQVLAF+ C  +NLE YD EGAWPVLIDDFVEH
Sbjct: 119 AGRFRLLNRWCDFIEKNQRHNISEDTWQQVLAFSRCVHENLEGYDSEGAWPVLIDDFVEH 178

Query: 178 MYRIQGSYYDYSNFRCNCGDTESQSCVLED---------PLPGLRSVSVLKRKLPEETSN 228
           MY I G   D S F C CGDTES+SC+ ++         P  GLR++  LKRK    TS 
Sbjct: 179 MYSILGPNKDTSLF-CKCGDTESESCLYQEDEHHKDYRRPHTGLRNIPGLKRK----TSK 233

Query: 229 NDMEHSSASDELISSNCKRSRAHGAVDWEDHDPLGNTSEDCMETSRQNSPLCSSKSQCAV 288
            + E     DE +            ++ ++   L N     ++TS  NSP CSSKS C++
Sbjct: 234 KNDEEEEDEDEEV------------LETQNSSSLLNFKR--IKTS--NSPRCSSKSPCSI 277

Query: 289 EGCLSKGFAGLLST 302
           E  LS+GFA LLST
Sbjct: 278 ERSLSQGFASLLST 291


>AT3G12760.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Defective-in-cullin neddylation protein
           (InterPro:IPR014764), Protein of unknown function DUF298
           (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
           BEST Arabidopsis thaliana protein match is: Domain of
           unknown function (DUF298) (TAIR:AT1G15860.2); Has 857
           Blast hits to 855 proteins in 202 species: Archae - 0;
           Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139;
           Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
           | chr3:4054963-4056826 FORWARD LENGTH=250
          Length = 250

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)

Query: 67  DELSMLMSRLDLM----VDFSAFSRFYEFVFFMCRENGQKNITVSRAVTAWKLVLAGR-F 121
           D +  L  +L  M     D   F   Y F F   +E GQK++ +  A+  W+L+ A R +
Sbjct: 126 DSIGKLQEKLPFMRSELKDEQKFHEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEREW 185

Query: 122 PLLHQWCEFVEKNQRYNISEDTWQQVLAFTWCTRDNLEAYDPEGAWPVLIDDFVEHMY 179
           PL+  WC+F++      IS+DTW Q+L F+      L  YD EGAWP LID+FVE++Y
Sbjct: 186 PLVTHWCDFLQDRHNKAISKDTWAQLLEFSRMVDPVLSNYDAEGAWPYLIDEFVEYLY 243