Miyakogusa Predicted Gene

Lj1g3v2512700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2512700.1 tr|D7KQE3|D7KQE3_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_679051
PE,64.06,9e-17,seg,NULL,CUFF.29085.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g072680.1 | transmembrane protein, putative | HC | chr7:27...   379   e-105

>Medtr7g072680.1 | transmembrane protein, putative | HC |
           chr7:27111393-27116335 | 20130731
          Length = 228

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 191/197 (96%)

Query: 31  AYKPGDVVPMSRMGQYHSSRTVWQDLIGRHCPIFAVNREVLMPLPKPTGYTGADPYKISF 90
           AYKPGD+VPMSRMGQYHSSRTVWQDLIGRHCPIFAVNREVL+P+PKPTGYTGADPYKISF
Sbjct: 32  AYKPGDIVPMSRMGQYHSSRTVWQDLIGRHCPIFAVNREVLIPIPKPTGYTGADPYKISF 91

Query: 91  QVGREKFFVPWLLVVNRKSTEVPLIEVDLRYSGSDFHGVTAKVVDMPHHYVEIHPEIRKQ 150
           QVGREKF++PWLLVVNRKSTEVP+I+++L+YSGSD  GVTAKV+DMPHHYVEIHPEI K 
Sbjct: 92  QVGREKFYIPWLLVVNRKSTEVPMIDIELKYSGSDLLGVTAKVLDMPHHYVEIHPEIGKH 151

Query: 151 FWDAEHWPKHILVRYTWKEHSEIDVTSGFYVLFGSGLMLSFILSIYILQSSRDKLERFVR 210
           FWDA+HWPKHIL RYTWKEHSEIDVTSGFYVLFGSGL+LSFILSIY LQSSRDKLERFVR
Sbjct: 152 FWDAQHWPKHILARYTWKEHSEIDVTSGFYVLFGSGLLLSFILSIYTLQSSRDKLERFVR 211

Query: 211 ETVAESNVPIGEIAKVE 227
           ETVAES++P+GEIAKVE
Sbjct: 212 ETVAESSIPVGEIAKVE 228