Miyakogusa Predicted Gene

Lj1g3v2482390.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2482390.2 Non Chatacterized Hit- tr|I3T3T8|I3T3T8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.13,0,EF_P,Translation elongation factor P; EFP,Translation
elongation factor P/YeiP, conserved site; no d,CUFF.29054.2
         (236 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08740.1 | Symbols:  | elongation factor P (EF-P) family prot...   312   1e-85
AT4G26310.1 | Symbols:  | elongation factor P (EF-P) family prot...    96   2e-20
AT4G26310.2 | Symbols:  | elongation factor P (EF-P) family prot...    79   2e-15

>AT3G08740.1 | Symbols:  | elongation factor P (EF-P) family protein
           | chr3:2654788-2656154 REVERSE LENGTH=236
          Length = 236

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 172/192 (89%), Gaps = 1/192 (0%)

Query: 46  RFFKIY-ALTSNDIKVGSNVEVDGAPWRVLEFLHVKPGKGAAFVRTKLKNYLTGNTVDKT 104
           RF +I+ ++++NDIK G+N+EVDGAPWRVLEFLHVKPGKGAAFVRTK++NY+ G+TV++T
Sbjct: 45  RFPRIHCSMSANDIKAGTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKIRNYVNGSTVERT 104

Query: 105 FRAGSSIEQADILKETKQFTYKDGSQFVFMDLNSYEEVRLDEKDIGDRTKWLKEGMDCSI 164
           FRAG S+E+A+I KETKQFTYKDGSQFVFMDL +YEE RL+E D+G++TKWLKEGMDC +
Sbjct: 105 FRAGISVEEANIYKETKQFTYKDGSQFVFMDLTTYEETRLNESDMGEKTKWLKEGMDCIL 164

Query: 165 LLWNGKVIDIDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNVGDEIL 224
           L W  KVID DLPITVKL VVDVDPGL+GDT QGGSKPAT++TGA+V VPLF+NVG+EI 
Sbjct: 165 LYWKDKVIDFDLPITVKLKVVDVDPGLRGDTVQGGSKPATMETGAIVAVPLFINVGEEIF 224

Query: 225 VDTRNGVYMSRA 236
           VDTR G YM+RA
Sbjct: 225 VDTRTGAYMNRA 236


>AT4G26310.1 | Symbols:  | elongation factor P (EF-P) family protein
           | chr4:13314006-13316066 REVERSE LENGTH=258
          Length = 258

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 111/203 (54%), Gaps = 9/203 (4%)

Query: 37  PMRNPSS--KPRFFKIYALTSNDIKVGSNVEVDGAPWRVLEFLHVKPGKGAAFVRTKLKN 94
           P+ +P S  + R  K+ A+    ++ G+ +E  G  +RV+E  H + G+G A ++ +L++
Sbjct: 58  PLHSPWSALQRRGVKVNAI---QLRAGNVIERTGRTFRVVEAEHKQQGRGGASIQVELRD 114

Query: 95  YLTGNTVDKTFRAGSSIEQADILKETKQFT--YKDGSQFVFMDLNSYEEVRLDEKDIGDR 152
             TGN ++  F +  S+E+  +  E K FT  Y +G     ++ N++E+V +     G  
Sbjct: 115 VDTGNKLNLRFGSEESVEK--VFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKA 172

Query: 153 TKWLKEGMDCSILLWNGKVIDIDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVN 212
             +LKE M   + L++G+ +   +P  +  TVV+    +KG T+    K A LD G+ + 
Sbjct: 173 AVYLKEEMKVQLQLYDGRALSASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQ 232

Query: 213 VPLFVNVGDEILVDTRNGVYMSR 235
           VP ++  G++I+++T +  ++ R
Sbjct: 233 VPSYLEAGEKIVINTEDDSFVKR 255


>AT4G26310.2 | Symbols:  | elongation factor P (EF-P) family protein
           | chr4:13314147-13316066 REVERSE LENGTH=261
          Length = 261

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 9/180 (5%)

Query: 37  PMRNPSS--KPRFFKIYALTSNDIKVGSNVEVDGAPWRVLEFLHVKPGKGAAFVRTKLKN 94
           P+ +P S  + R  K+ A+    ++ G+ +E  G  +RV+E  H + G+G A ++ +L++
Sbjct: 58  PLHSPWSALQRRGVKVNAI---QLRAGNVIERTGRTFRVVEAEHKQQGRGGASIQVELRD 114

Query: 95  YLTGNTVDKTFRAGSSIEQADILKETKQFT--YKDGSQFVFMDLNSYEEVRLDEKDIGDR 152
             TGN ++  F +  S+E+  +  E K FT  Y +G     ++ N++E+V +     G  
Sbjct: 115 VDTGNKLNLRFGSEESVEK--VFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKA 172

Query: 153 TKWLKEGMDCSILLWNGKVIDIDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVN 212
             +LKE M   + L++G+ +   +P  +  TVV+    +KG T+    K A LD G+ + 
Sbjct: 173 AVYLKEEMKVQLQLYDGRALSASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQ 232