Miyakogusa Predicted Gene

Lj1g3v2446010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2446010.1 Non Characterized Hit- tr|B6TFZ3|B6TFZ3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,41.98,3e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL,CUFF.29025.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g072470.1 | transcription factor bHLH93-like protein | HC ...   199   7e-52
Medtr5g083810.1 | transcription factor bHLH93-like protein | HC ...   153   6e-38
Medtr3g466150.1 | transcription factor bHLH93-like protein | HC ...   114   4e-26
Medtr3g030700.1 | helix loop helix DNA-binding domain protein | ...    62   2e-10
Medtr3g104100.1 | helix loop helix DNA-binding domain protein | ...    58   3e-09
Medtr2g081040.1 | helix loop helix DNA-binding domain protein | ...    52   2e-07
Medtr3g498695.2 | BHLH transcriptional factor | HC | chr3:450934...    52   3e-07

>Medtr7g072470.1 | transcription factor bHLH93-like protein | HC |
           chr7:26944601-26947376 | 20130731
          Length = 132

 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 109/124 (87%)

Query: 27  VNKASIIADASKYIEELKQKVEDLNSELGVTESSTTQIDELPMVSVKTLEKGFLIQVLLE 86
           +NKASII DASKYI+ELKQKVE +NSELG  ESST+Q+DE PMVSVKTLEKGFLI VLLE
Sbjct: 6   MNKASIIVDASKYIKELKQKVEGMNSELGNVESSTSQMDEQPMVSVKTLEKGFLINVLLE 65

Query: 87  KSCPGMLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKKHSVNAHVVKEAVLQAI 146
           K+ PGMLVSILEAFE+L LDV+DAR SCEDTFQLE V  +SHK  S+NA VVK+AVLQAI
Sbjct: 66  KNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAI 125

Query: 147 RNTD 150
           +NTD
Sbjct: 126 KNTD 129


>Medtr5g083810.1 | transcription factor bHLH93-like protein | HC |
           chr5:36159060-36156695 | 20130731
          Length = 179

 Score =  153 bits (386), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 1   MGSRERRRVALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTESS 60
           M SRE++R AL   LQ LR  TNS A+N  SI+ DASKYIE LK+KVE LN E+   ESS
Sbjct: 25  MVSREQKRAALHEKLQLLRSVTNSHALNDTSIVIDASKYIENLKEKVERLNEEIASAESS 84

Query: 61  TTQIDELPMVSVKTLEKGFLIQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQL 120
           +     LPMV+V+TLEKGFLI V   KS  GMLVSILEA EE++L V++AR SC D F  
Sbjct: 85  SVHNPNLPMVTVETLEKGFLINVFSAKSSQGMLVSILEAIEEMRLTVLEARVSCTDNFCF 144

Query: 121 ETVARESHKK-HSVNAHVVKEAVLQAIRN 148
           + V  E+ ++  +++A  VK+AV QAI+N
Sbjct: 145 QAVGEENEEQGDTIDAQAVKQAVGQAIKN 173


>Medtr3g466150.1 | transcription factor bHLH93-like protein | HC |
           chr3:27180280-27181354 | 20130731
          Length = 158

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 1   MGSRERRRVALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTESS 60
           M S+  +R A+   L  LR   +S++ +K S+I DA+KYI++LKQK+E++N       + 
Sbjct: 1   MVSKVHKRTAMYRNLHLLRSIIHSTSNSKTSVILDATKYIQDLKQKLEEINPLRVAASTK 60

Query: 61  TTQIDELPMVSVKTLEKGFLIQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQL 120
               D  P + V+  E+GF+I+V+ EK C G+LV ILEA E+L L+V+DAR SC D F L
Sbjct: 61  MVDYDATPKIKVEPKEEGFVIEVMSEKRCQGLLVFILEAVEDLGLEVLDARVSCVDNFCL 120

Query: 121 ETVARESHKKH---SVNAHVVKEAVLQAIRN 148
           E V  +  K      +NA  V++ V QAI+N
Sbjct: 121 EAVGNKQEKNEDTCPLNAQSVEQVVSQAIQN 151


>Medtr3g030700.1 | helix loop helix DNA-binding domain protein | LC
           | chr3:9744931-9748052 | 20130731
          Length = 375

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 32/155 (20%)

Query: 6   RRRVALQHTLQQLRDATNS-SAVNKASIIADASKYIEELKQKVEDLNSELGVTESSTTQI 64
           +RR  L++ + +LR      S ++K SI+ DA  Y++ELKQ++ DL SE  +  SS    
Sbjct: 203 KRRKKLKNNMHKLRSVVPKISKMDKVSILGDAVDYLKELKQQINDLQSE--IKSSSHKSF 260

Query: 65  DELPMVS-----------------------------VKTLEKGFLIQVLLEKSCPGMLVS 95
             LPM S                             V+  E G +   +   S PG+LVS
Sbjct: 261 MPLPMTSTMSTLPVQLKEQLFQNNVSSLKNQPAKVEVRVKEGGIVNIHITCASKPGVLVS 320

Query: 96  ILEAFEELQLDVIDARASCEDTFQLETVARESHKK 130
            + A + L LDV  A  SC + F L+    E H K
Sbjct: 321 TMMALDSLGLDVHQANISCFNDFSLDVFKVEQHNK 355


>Medtr3g104100.1 | helix loop helix DNA-binding domain protein | LC
           | chr3:47966012-47960662 | 20130731
          Length = 379

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 33/161 (20%)

Query: 3   SRERRRVALQHTLQQLRDATNS-SAVNKASIIADASKYIEELKQKVEDLNSELGV----- 56
           + ++RR  L   + +LR      + ++K SI+ DA  Y+ ELK+++ DL SE+       
Sbjct: 199 AEKKRRQKLSDNMHKLRSVVPKITKMDKISILGDAVNYLNELKEQINDLQSEIASSSPRS 258

Query: 57  -------TESSTTQIDELPM--------------------VSVKTLEKGFLIQVLLEKSC 89
                  T   T+ +  LP+                    V V+  E+G +   +   + 
Sbjct: 259 FMPPPTGTHIMTSTMSALPVQMKEKLCPNNVSGLKNQPTKVDVRVREEGIVNIHMFCANK 318

Query: 90  PGMLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKK 130
           PG+L SI++A + L LDV  A  SC + F L+    E H K
Sbjct: 319 PGVLASIMKALDSLGLDVHQANISCFNDFSLDVFKAEQHSK 359


>Medtr2g081040.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:33955361-33949610 | 20130731
          Length = 361

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 33/159 (20%)

Query: 5   ERRRVALQHTLQQLRDATNS-SAVNKASIIADASKYIEELKQKVEDLNSEL--------- 54
           ++RR  L   + +LR      + ++K SI+ DA  Y++ELK+++ DL SE+         
Sbjct: 183 KKRRQKLSDNMHKLRSVVPKITKMDKISILGDAVDYLKELKKQISDLQSEIESSSPRSFV 242

Query: 55  ---GVTESSTTQIDELPM--------------------VSVKTLEKGFLIQVLLEKSCPG 91
                T   T+ +  LP+                    V V+  E G +   +L    P 
Sbjct: 243 PPPAGTRIKTSTMSTLPVQMKEKLCPNNVSGLKNQPTKVDVRVREGGIVNIHMLCAYKPD 302

Query: 92  MLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKK 130
           +L S ++A + L LDV  A  SC + F L+    E H K
Sbjct: 303 VLASTMKALDSLGLDVHRANISCFNGFSLDVFKAEQHNK 341


>Medtr3g498695.2 | BHLH transcriptional factor | HC |
           chr3:45093436-45090542 | 20130731
          Length = 484

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 3   SRERRRVALQHTLQQLRDATNS-SAVNKASIIADASKYIEELKQKVEDLNSELGVTE--S 59
           +  RRR  L   L  LR      S +++ASI+ DA +Y++EL Q++ DL++EL  T   S
Sbjct: 302 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGS 361

Query: 60  STTQIDEL-PMVSVKTLEKGFLIQVLLEKSC----------------------------- 89
           S T    L P+    +   G + + L   S                              
Sbjct: 362 SLTPASSLHPLTPTPSSLPGRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCTRK 421

Query: 90  PGMLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKKHSVNAHVVKEAVLQA 145
           PG+L+S + A + L LD+  A  SC + F ++    E  +   V+   +K  +L +
Sbjct: 422 PGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAECKEGQDVHPEQIKAVLLDS 477