Miyakogusa Predicted Gene

Lj1g3v2404340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2404340.1 Non Chatacterized Hit- tr|I0Z0Y2|I0Z0Y2_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,31.44,0.000000000003,seg,NULL; DUF3110,Protein of unknown function
DUF3110,NODE_76863_length_1073_cov_37.132339.path1.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   297   4e-81
AT1G13990.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   280   7e-76
AT1G13990.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   222   2e-58

>AT1G13990.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF3110 (InterPro:IPR021503); Has 25
           Blast hits to 25 proteins in 8 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:4794810-4796476 FORWARD LENGTH=277
          Length = 277

 Score =  297 bits (761), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/195 (72%), Positives = 166/195 (85%), Gaps = 6/195 (3%)

Query: 75  RALHMDGAIPGNSDEFLKRVSSRAYDMRRHLHQSFDTSSYDVLDDNPWRETSKPVYVLTQ 134
           +ALH+DG IPG SDEF+++VSSRAYDMRR L Q+FD++SYDVL+ NPWR  SKPVYVLT 
Sbjct: 87  KALHLDGTIPGTSDEFVRQVSSRAYDMRRKLEQTFDSTSYDVLESNPWRGDSKPVYVLTH 146

Query: 135 KENQLCTMKTRRNISEVERELGLLFPKGGSWRSGIGNQSKKVREGTKFQMLVEDIRDGVL 194
           +ENQ+CTMKTR N SEVE+ELGLLFP      S I NQ+K+ R  TKF MLVEDIRDGVL
Sbjct: 147 RENQICTMKTRTNHSEVEKELGLLFP------SRISNQTKQARPKTKFDMLVEDIRDGVL 200

Query: 195 VFEDENEAVKYCDLLEGGGQGCEGVAEIEASSVFDLCKKMRALAVIFRRGRTPPLPESLK 254
           VFED NEAV+YCDLL+GGG+GCEGVAEIEASSVFDLC+K R+LAV+FRRGRTPP P++L+
Sbjct: 201 VFEDVNEAVRYCDLLQGGGKGCEGVAEIEASSVFDLCRKTRSLAVLFRRGRTPPTPQTLE 260

Query: 255 LNLRARKRSLEDQDD 269
            NL +RKRSLED  D
Sbjct: 261 RNLGSRKRSLEDLRD 275


>AT1G13990.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF3110 (InterPro:IPR021503); Has 6
           Blast hits to 6 proteins in 2 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:4794810-4796476 FORWARD LENGTH=305
          Length = 305

 Score =  280 bits (716), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 166/223 (74%), Gaps = 34/223 (15%)

Query: 75  RALHMDGAIPGNSDEFLKRVSSRAYDMRRHLHQSFDTSSYD------------------- 115
           +ALH+DG IPG SDEF+++VSSRAYDMRR L Q+FD++SYD                   
Sbjct: 87  KALHLDGTIPGTSDEFVRQVSSRAYDMRRKLEQTFDSTSYDEFLKDCLGSLGTVFPRRRV 146

Query: 116 ---------VLDDNPWRETSKPVYVLTQKENQLCTMKTRRNISEVERELGLLFPKGGSWR 166
                    +L+ NPWR  SKPVYVLT +ENQ+CTMKTR N SEVE+ELGLLFP      
Sbjct: 147 LQLNYDEENLLESNPWRGDSKPVYVLTHRENQICTMKTRTNHSEVEKELGLLFP------ 200

Query: 167 SGIGNQSKKVREGTKFQMLVEDIRDGVLVFEDENEAVKYCDLLEGGGQGCEGVAEIEASS 226
           S I NQ+K+ R  TKF MLVEDIRDGVLVFED NEAV+YCDLL+GGG+GCEGVAEIEASS
Sbjct: 201 SRISNQTKQARPKTKFDMLVEDIRDGVLVFEDVNEAVRYCDLLQGGGKGCEGVAEIEASS 260

Query: 227 VFDLCKKMRALAVIFRRGRTPPLPESLKLNLRARKRSLEDQDD 269
           VFDLC+K R+LAV+FRRGRTPP P++L+ NL +RKRSLED  D
Sbjct: 261 VFDLCRKTRSLAVLFRRGRTPPTPQTLERNLGSRKRSLEDLRD 303


>AT1G13990.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF3110 (InterPro:IPR021503); Has 4
           Blast hits to 4 proteins in 1 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:4794810-4796476 FORWARD LENGTH=308
          Length = 308

 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/226 (55%), Positives = 153/226 (67%), Gaps = 37/226 (16%)

Query: 75  RALHMDGAIPGNSDEFLKRVSSRAYDMRRHLHQSFDTSSYD------------------V 116
           +ALH+DG IPG SDEF+++VSSRAYDMRR L Q+FD++SYD                  V
Sbjct: 87  KALHLDGTIPGTSDEFVRQVSSRAYDMRRKLEQTFDSTSYDEFLKDCLGSLGTVFPRRRV 146

Query: 117 LDDN------PWRETSKPVYVLTQKE------NQLCTMKTRRNI-SEVERELGLLFPKGG 163
           L  N       + +++   +  T  E      + L  M     I SEVE+ELGLLFP   
Sbjct: 147 LQLNYDEENCSFLDSTLTCWSPTHGEEIRSLFSFLLPMTLAILINSEVEKELGLLFP--- 203

Query: 164 SWRSGIGNQSKKVREGTKFQMLVEDIRDGVLVFEDENEAVKYCDLLEGGGQGCEGVAEIE 223
              S I NQ+K+ R  TKF MLVEDIRDGVLVFED NEAV+YCDLL+GGG+GCEGVAEIE
Sbjct: 204 ---SRISNQTKQARPKTKFDMLVEDIRDGVLVFEDVNEAVRYCDLLQGGGKGCEGVAEIE 260

Query: 224 ASSVFDLCKKMRALAVIFRRGRTPPLPESLKLNLRARKRSLEDQDD 269
           ASSVFDLC+K R+LAV+FRRGRTPP P++L+ NL +RKRSLED  D
Sbjct: 261 ASSVFDLCRKTRSLAVLFRRGRTPPTPQTLERNLGSRKRSLEDLRD 306