Miyakogusa Predicted Gene

Lj1g3v2093250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2093250.1 Non Chatacterized Hit- tr|C5Y7K9|C5Y7K9_SORBI
Putative uncharacterized protein Sb05g006630
OS=Sorghu,45.26,2e-17,FAMILY NOT
NAMED,NULL,NODE_62300_length_977_cov_23.362333.path2.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15215.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...   200   6e-52
AT3G18380.1 | Symbols:  | sequence-specific DNA binding transcri...   191   4e-49
AT3G18380.3 | Symbols:  | sequence-specific DNA binding transcri...   187   4e-48
AT3G18380.2 | Symbols:  | sequence-specific DNA binding transcri...   186   9e-48
AT1G15215.3 | Symbols:  | BEST Arabidopsis thaliana protein matc...   184   3e-47
AT1G15215.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   176   1e-44

>AT1G15215.2 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription
           factors;sequence-specific DNA binding
           (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
           16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:5238096-5239770 FORWARD
           LENGTH=258
          Length = 258

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 105/246 (42%), Positives = 143/246 (58%), Gaps = 26/246 (10%)

Query: 12  FSGFTNAEIEKMDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQSWFQAR 71
           F+ FT +EI  M+ L  E   +S  ++F Q + ++F+ S  R GK ++ W +VQ WFQ +
Sbjct: 11  FTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK 70

Query: 72  IQD--------LPEVPE-----NNLESSQGKCKEGETI-------------RDPSQLEFE 105
           ++         LP  P      +N  S          +              D + L FE
Sbjct: 71  LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130

Query: 106 ARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTD 165
           A+S +D AWYDV +FL +R + TGE EVRVRF GF    DEWVN+K SVRERS+P E ++
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190

Query: 166 CSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLR 225
           C  +NVGD +LCFQER DQA+Y D  +L I+R +HD   C C+ LVRY+ DNTEE + L 
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLE 250

Query: 226 RLCRRP 231
           R+CRRP
Sbjct: 251 RICRRP 256


>AT3G18380.1 | Symbols:  | sequence-specific DNA binding
           transcription factors;sequence-specific DNA binding |
           chr3:6311002-6313181 REVERSE LENGTH=348
          Length = 348

 Score =  191 bits (485), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/268 (40%), Positives = 146/268 (54%), Gaps = 42/268 (15%)

Query: 6   PRNRATFSGFTNAEIEKMDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQ 65
           P N      F   E+ +M+ +  +       R   + L   F+ S  R GK  V++ ++ 
Sbjct: 5   PSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIW 64

Query: 66  SWFQARI---------------------QDLP----------EVPEN-----NLE----S 85
           +WFQ R                       DLP           VP+      NL     +
Sbjct: 65  NWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPA 124

Query: 86  SQGKCKEG--ETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGAS 143
             G    G   +  D S LEFEA+S +DGAWYDV+AFLAHR +  G+ EV+VRF GF   
Sbjct: 125 PSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVE 184

Query: 144 EDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIR 203
           EDEW+N+K  VR+RS+P E+++C  +  GD VLCFQE +DQA+Y+DA +L+ QRR HD+R
Sbjct: 185 EDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVR 244

Query: 204 GCRCLILVRYDHDNTEEKVRLRRLCRRP 231
           GCRC  LVRY HD +EE V LR++CRRP
Sbjct: 245 GCRCRFLVRYSHDQSEEIVPLRKICRRP 272


>AT3G18380.3 | Symbols:  | sequence-specific DNA binding
           transcription factors;sequence-specific DNA binding |
           chr3:6311002-6313181 REVERSE LENGTH=346
          Length = 346

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 146/269 (54%), Gaps = 46/269 (17%)

Query: 6   PRNRATFSGFTNAEIEKMDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQ 65
           P N      F   E+ +M+ +  +       R   + L   F+ S  R GK  V++ ++ 
Sbjct: 5   PSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIW 64

Query: 66  SWFQARI---------------------QDLPE----------VPEN-----NLE----- 84
           +WFQ R                       DLP           VP+      NL      
Sbjct: 65  NWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPA 124

Query: 85  -SSQGKCKEGETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGAS 143
            S  G  + G    D S LEFEA+S +DGAWYDV+AFLAHR +  G+ EV+VRF GF   
Sbjct: 125 PSVPGVMRSGS---DNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVE 181

Query: 144 EDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIR 203
           EDEW+N+K  VR+RS+P E+++C  +  GD VLCFQE +DQA+Y+DA +L+ QRR HD+R
Sbjct: 182 EDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVR 241

Query: 204 GCRCLILVRYDHDNTE-EKVRLRRLCRRP 231
           GCRC  LVRY HD +E E V LR++CRRP
Sbjct: 242 GCRCRFLVRYSHDQSEQEIVPLRKICRRP 270


>AT3G18380.2 | Symbols:  | sequence-specific DNA binding
           transcription factors;sequence-specific DNA binding |
           chr3:6311002-6313181 REVERSE LENGTH=349
          Length = 349

 Score =  186 bits (473), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 146/269 (54%), Gaps = 43/269 (15%)

Query: 6   PRNRATFSGFTNAEIEKMDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQ 65
           P N      F   E+ +M+ +  +       R   + L   F+ S  R GK  V++ ++ 
Sbjct: 5   PSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIW 64

Query: 66  SWFQARI---------------------QDLPE----------VPEN-----NLE----S 85
           +WFQ R                       DLP           VP+      NL     +
Sbjct: 65  NWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPA 124

Query: 86  SQGKCKEG--ETIRDPSQLEFEARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGAS 143
             G    G   +  D S LEFEA+S +DGAWYDV+AFLAHR +  G+ EV+VRF GF   
Sbjct: 125 PSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVE 184

Query: 144 EDEWVNIKDSVRERSVPFESTDCSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIR 203
           EDEW+N+K  VR+RS+P E+++C  +  GD VLCFQE +DQA+Y+DA +L+ QRR HD+R
Sbjct: 185 EDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVR 244

Query: 204 GCRCLILVRYDHDNTE-EKVRLRRLCRRP 231
           GCRC  LVRY HD +E E V LR++CRRP
Sbjct: 245 GCRCRFLVRYSHDQSEQEIVPLRKICRRP 273


>AT1G15215.3 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription
           factors;sequence-specific DNA binding
           (TAIR:AT3G18380.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr1:5238096-5239741 FORWARD LENGTH=252
          Length = 252

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 136/240 (56%), Gaps = 26/240 (10%)

Query: 12  FSGFTNAEIEKMDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQSWFQAR 71
           F+ FT +EI  M+ L  E   +S  ++F Q + ++F+ S  R GK ++ W +VQ WFQ +
Sbjct: 11  FTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK 70

Query: 72  IQD--------LPEVPE-----NNLESSQGKCKEGETI-------------RDPSQLEFE 105
           ++         LP  P      +N  S          +              D + L FE
Sbjct: 71  LKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFE 130

Query: 106 ARSTKDGAWYDVEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTD 165
           A+S +D AWYDV +FL +R + TGE EVRVRF GF    DEWVN+K SVRERS+P E ++
Sbjct: 131 AKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSE 190

Query: 166 CSYLNVGDPVLCFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLR 225
           C  +NVGD +LCFQER DQA+Y D  +L I+R +HD   C C+ LVRY+ DNTE   R R
Sbjct: 191 CGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTECMFRNR 250


>AT1G15215.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription
           factors;sequence-specific DNA binding
           (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in
           16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:5238238-5239741 FORWARD
           LENGTH=231
          Length = 231

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 129/229 (56%), Gaps = 26/229 (11%)

Query: 23  MDKLSGESQGRSFDREFYQKLTASFNRSSGRAGKPTVKWTEVQSWFQARIQD-------- 74
           M+ L  E   +S  ++F Q + ++F+ S  R GK ++ W +VQ WFQ +++         
Sbjct: 1   MENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQPKSKT 60

Query: 75  LPEVPE-----NNLESSQGKCKEGETI-------------RDPSQLEFEARSTKDGAWYD 116
           LP  P      +N  S          +              D + L FEA+S +D AWYD
Sbjct: 61  LPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYAWYD 120

Query: 117 VEAFLAHRFVGTGEAEVRVRFVGFGASEDEWVNIKDSVRERSVPFESTDCSYLNVGDPVL 176
           V +FL +R + TGE EVRVRF GF    DEWVN+K SVRERS+P E ++C  +NVGD +L
Sbjct: 121 VSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLL 180

Query: 177 CFQERRDQAIYYDARILEIQRRMHDIRGCRCLILVRYDHDNTEEKVRLR 225
           CFQER DQA+Y D  +L I+R +HD   C C+ LVRY+ DNTE   R R
Sbjct: 181 CFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTECMFRNR 229