Miyakogusa Predicted Gene
- Lj1g3v1911750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1911750.1 Non Chatacterized Hit- tr|I1JUD5|I1JUD5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2609
PE=,96.49,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.28144.1
(427 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 743 0.0
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 743 0.0
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 721 0.0
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 636 0.0
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 630 0.0
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 254 8e-68
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 253 1e-67
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 253 1e-67
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 253 1e-67
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 253 1e-67
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 237 9e-63
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 233 1e-61
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 233 1e-61
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 229 2e-60
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 228 6e-60
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 228 7e-60
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 227 1e-59
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 224 1e-58
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 218 7e-57
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 195 5e-50
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 191 7e-49
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 186 4e-47
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 185 6e-47
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 183 2e-46
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 178 7e-45
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 176 2e-44
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 174 7e-44
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 174 7e-44
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 174 1e-43
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 174 1e-43
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 174 1e-43
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 174 1e-43
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 171 1e-42
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 169 3e-42
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 169 3e-42
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 169 4e-42
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 167 9e-42
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 166 4e-41
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 166 4e-41
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 165 5e-41
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 164 1e-40
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 159 5e-39
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 158 7e-39
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 158 8e-39
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 157 1e-38
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 157 1e-38
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 156 3e-38
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 155 4e-38
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 155 4e-38
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 155 4e-38
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 155 6e-38
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 154 1e-37
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 154 1e-37
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 150 1e-36
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 150 1e-36
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 150 2e-36
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 140 1e-33
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 140 1e-33
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 139 3e-33
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 138 8e-33
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 135 4e-32
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 135 4e-32
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 135 4e-32
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 135 8e-32
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 6e-31
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 131 1e-30
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 128 7e-30
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 125 7e-29
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 123 3e-28
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 121 8e-28
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 120 2e-27
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 114 1e-25
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 105 4e-23
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 104 1e-22
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 99 6e-21
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 96 3e-20
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 95 9e-20
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 60 2e-09
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 60 4e-09
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 55 9e-08
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 54 3e-07
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO... 50 3e-06
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60... 50 3e-06
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/401 (88%), Positives = 373/401 (93%)
Query: 27 AGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
+G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV
Sbjct: 27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
Query: 87 ICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKV 146
ICQAKSGMGKTAVFVLS+LQQI+P PGQVSALVLCHTRELAYQIC+EF RFSTYLPD KV
Sbjct: 87 ICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
Query: 147 AVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESL 206
+VFYGGVNIK+HKDLL+NECPHIVVGTPGR+LAL R+KDLSLKNVRHFILDECDKMLESL
Sbjct: 147 SVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Query: 207 DMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQH 266
DMR+DVQ+IFK+TPHDKQVMMFSATLSKEIRP+CKKFMQDPMEIYVDDEAKLTLHGLVQH
Sbjct: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
Query: 267 YIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEE 326
YI DALDFNQVVIFVKSVSRAAEL+KLLVECNFPSICIHSGMSQEE
Sbjct: 267 YIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326
Query: 327 RLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
RL RYK FKEGH RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG
Sbjct: 327 RLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
Query: 387 LAITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
LAITFV+ ++D +VLN VQ RFEVDIK+LPEQIDTSTYMPS
Sbjct: 387 LAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/401 (88%), Positives = 373/401 (93%)
Query: 27 AGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
+G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV
Sbjct: 27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
Query: 87 ICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKV 146
ICQAKSGMGKTAVFVLS+LQQI+P PGQVSALVLCHTRELAYQIC+EF RFSTYLPD KV
Sbjct: 87 ICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
Query: 147 AVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESL 206
+VFYGGVNIK+HKDLL+NECPHIVVGTPGR+LAL R+KDLSLKNVRHFILDECDKMLESL
Sbjct: 147 SVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Query: 207 DMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQH 266
DMR+DVQ+IFK+TPHDKQVMMFSATLSKEIRP+CKKFMQDPMEIYVDDEAKLTLHGLVQH
Sbjct: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 266
Query: 267 YIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEE 326
YI DALDFNQVVIFVKSVSRAAEL+KLLVECNFPSICIHSGMSQEE
Sbjct: 267 YIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326
Query: 327 RLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
RL RYK FKEGH RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG
Sbjct: 327 RLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386
Query: 387 LAITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
LAITFV+ ++D +VLN VQ RFEVDIK+LPEQIDTSTYMPS
Sbjct: 387 LAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/442 (80%), Positives = 373/442 (84%), Gaps = 41/442 (9%)
Query: 27 AGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
+G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV
Sbjct: 27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
Query: 87 ICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKV 146
ICQAKSGMGKTAVFVLS+LQQI+P PGQVSALVLCHTRELAYQIC+EF RFSTYLPD KV
Sbjct: 87 ICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
Query: 147 AVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESL 206
+VFYGGVNIK+HKDLL+NECPHIVVGTPGR+LAL R+KDLSLKNVRHFILDECDKMLESL
Sbjct: 147 SVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Query: 207 DMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQ--------------------- 245
DMR+DVQ+IFK+TPHDKQVMMFSATLSKEIRP+CKKFMQ
Sbjct: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGFGSG 266
Query: 246 --------------------DPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDA 285
DPMEIYVDDEAKLTLHGLVQHYI DA
Sbjct: 267 YCVFPRFHRARMGLNVPSNIDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDA 326
Query: 286 LDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVAT 345
LDFNQVVIFVKSVSRAAEL+KLLVECNFPSICIHSGMSQEERL RYK FKEGH RILVAT
Sbjct: 327 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVAT 386
Query: 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQ 405
DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+ ++D +VLN VQ
Sbjct: 387 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 446
Query: 406 SRFEVDIKQLPEQIDTSTYMPS 427
RFEVDIK+LPEQIDTSTYMPS
Sbjct: 447 ERFEVDIKELPEQIDTSTYMPS 468
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/460 (70%), Positives = 351/460 (76%), Gaps = 59/460 (12%)
Query: 27 AGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
+G KVNGEA KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV
Sbjct: 27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDV 86
Query: 87 ICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKV 146
ICQAKSGMGKTAVFVLS+LQQI+P PGQVSALVLCHTRELAYQIC+EF RFSTYLPD KV
Sbjct: 87 ICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 146
Query: 147 AVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE-- 204
+VFYGGVNIK+HKDLL+NECPHIVVGTPGR+LAL R+KDLSLKNVRHFILDECDKMLE
Sbjct: 147 SVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESL 206
Query: 205 ----------------------SLDMRKDVQDIFK------LTPHDKQVMMFSATLSKEI 236
S + K+++ + K L V +FS +
Sbjct: 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDFLENETVSVRLFSFGVENSE 266
Query: 237 RPIC----------------------------KKFMQ-DPMEIYVDDEAKLTLHGLVQHY 267
+C K++ + PMEIYVDDEAKLTLHGLVQHY
Sbjct: 267 WRLCSFGFIVLVWVSMFRAILMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLVQHY 326
Query: 268 IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEER 327
I DALDFNQVVIFVKSVSRAAEL+KLLVECNFPSICIHSGMSQEER
Sbjct: 327 IKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 386
Query: 328 LKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
L RYK FKEGH RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL
Sbjct: 387 LTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 446
Query: 388 AITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
AITFV+ ++D +VLN VQ RFEVDIK+LPEQIDTSTYMPS
Sbjct: 447 AITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 486
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 630 bits (1625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/344 (87%), Positives = 318/344 (92%)
Query: 84 MDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPD 143
MDVICQAKSGMGKTAVFVLS+LQQI+P PGQVSALVLCHTRELAYQIC+EF RFSTYLPD
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 144 LKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKML 203
KV+VFYGGVNIK+HKDLL+NECPHIVVGTPGR+LAL R+KDLSLKNVRHFILDECDKML
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 204 ESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGL 263
ESLDMR+DVQ+IFK+TPHDKQVMMFSATLSKEIRP+CKKFMQDPMEIYVDDEAKLTLHGL
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 264 VQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMS 323
VQHYI DALDFNQVVIFVKSVSRAAEL+KLLVECNFPSICIHSGMS
Sbjct: 181 VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 240
Query: 324 QEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
QEERL RYK FKEGH RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG
Sbjct: 241 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
Query: 384 TKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
TKGLAITFV+ ++D +VLN VQ RFEVDIK+LPEQIDTSTYMPS
Sbjct: 301 TKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 344
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 217/378 (57%), Gaps = 8/378 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D+ LK +LLR I + GFE PS +Q E IP A+ G D++ +AK+G GKT F + +L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 108 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECP 167
IDP + A++L TRELA Q + S YL ++V V GG +++ D++R P
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYL-KIEVMVTTGGTSLR--DDIMRLYQP 272
Query: 168 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
H++VGTPGRIL L + LK+ ++DE DK+L S++ + ++++ + P +Q++
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLL-SVEFQPSIEELIQFLPESRQIL 331
Query: 227 MFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDAL 286
MFSAT ++ ++++ P I + D+ LTL G+ Q+Y L
Sbjct: 332 MFSATFPVTVKSFKDRYLKKPYIINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKL 389
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + + F+ G R LV TD
Sbjct: 390 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQS 406
L RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V+ D + +
Sbjct: 450 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQ 508
Query: 407 RFEVDIKQLPEQIDTSTY 424
+IK +P ID + Y
Sbjct: 509 ELGTEIKPIPSLIDKAIY 526
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 8/378 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D+ LK +LL+ I + GFE PS +Q E IP A+ G D++ +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 108 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECP 167
IDP + A++L TRELA Q + S YL +++V V GG +++ D++R P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLR--DDIMRLHQP 242
Query: 168 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
H++VGTPGRIL LT+ LK+ ++DE DK+L S + + ++++ + P ++Q +
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLL-SAEFQPSLEELIQFLPQNRQFL 301
Query: 227 MFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDAL 286
MFSAT ++ + ++ P I + D+ LTL G+ Q+Y L
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKL 359
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + + F+ G R LV TD
Sbjct: 360 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQS 406
L RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V+ D + +
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQ 478
Query: 407 RFEVDIKQLPEQIDTSTY 424
+IK +P ID + Y
Sbjct: 479 ELGTEIKPIPSNIDQAIY 496
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 8/378 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D+ LK +LL+ I + GFE PS +Q E IP A+ G D++ +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 108 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECP 167
IDP + A++L TRELA Q + S YL +++V V GG +++ D++R P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLR--DDIMRLHQP 242
Query: 168 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
H++VGTPGRIL LT+ LK+ ++DE DK+L S + + ++++ + P ++Q +
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLL-SAEFQPSLEELIQFLPQNRQFL 301
Query: 227 MFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDAL 286
MFSAT ++ + ++ P I + D+ LTL G+ Q+Y L
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKL 359
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + + F+ G R LV TD
Sbjct: 360 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQS 406
L RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG GLA+ V+ D + +
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQ 478
Query: 407 RFEVDIKQLPEQIDTSTY 424
+IK +P ID + Y
Sbjct: 479 ELGTEIKPIPSNIDQAIY 496
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 213/378 (56%), Gaps = 8/378 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 108 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECP 167
ID + A+++ TRELA Q + +L ++V V GG ++K D++R P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIMRLYQP 249
Query: 168 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
H++VGTPGRIL LT+ LK+ ++DE DK+L S + + V+ + P +Q++
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL-SQEFQPSVEHLISFLPESRQIL 308
Query: 227 MFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDAL 286
MFSAT ++ +F+ +P I + DE LTL G+ Q Y L
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDE--LTLKGITQFYAFVEERQKIHCLNTLFSKL 366
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + + F+ G R LV TD
Sbjct: 367 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 426
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQS 406
L RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG GLA+ ++ + L ++
Sbjct: 427 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQ 485
Query: 407 RFEVDIKQLPEQIDTSTY 424
+IKQ+P ID + Y
Sbjct: 486 ELGTEIKQIPPHIDQAIY 503
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 213/378 (56%), Gaps = 8/378 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D+ LK ELL I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 108 IDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECP 167
ID + A+++ TRELA Q + +L ++V V GG ++K D++R P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIMRLYQP 249
Query: 168 -HIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
H++VGTPGRIL LT+ LK+ ++DE DK+L S + + V+ + P +Q++
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLL-SQEFQPSVEHLISFLPESRQIL 308
Query: 227 MFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDAL 286
MFSAT ++ +F+ +P I + DE LTL G+ Q Y L
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDE--LTLKGITQFYAFVEERQKIHCLNTLFSKL 366
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
NQ +IF SV+R L K + E + IH+ M Q+ R + + F+ G R LV TD
Sbjct: 367 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 426
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQS 406
L RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG GLA+ ++ + L ++
Sbjct: 427 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN-LYRIEQ 485
Query: 407 RFEVDIKQLPEQIDTSTY 424
+IKQ+P ID + Y
Sbjct: 486 ELGTEIKQIPPHIDQAIY 503
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 237 bits (605), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 206/368 (55%), Gaps = 6/368 (1%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVP 112
L+P+LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ+D
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISL 107
Query: 113 GQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVG 172
Q ALVL TRELA QI YL +K GG +++ + +L++ H+VVG
Sbjct: 108 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQSGV-HVVVG 165
Query: 173 TPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATL 232
TPGR+ L R + L ++ F+LDE D+ML S + + DIF+L P QV +FSAT+
Sbjct: 166 TPGRVFDLLRRQSLRADAIKMFVLDEADEML-SRGFKDQIYDIFQLLPSKVQVGVFSATM 224
Query: 233 SKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXX-XXXDALDFNQV 291
E I +KFM P+ I V + +LTL G+ Q Y+ + L Q
Sbjct: 225 PPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQS 283
Query: 292 VIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRG 351
VIFV + + L + + H M Q R + F+ G +R+L+ TDL+ RG
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 343
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVD 411
ID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI F++ S D ++ ++Q + V
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMT-SEDERMMADIQRFYNVV 402
Query: 412 IKQLPEQI 419
+++LP +
Sbjct: 403 VEELPSNV 410
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 209/381 (54%), Gaps = 7/381 (1%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI YL +KV GG +++ +
Sbjct: 93 FCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ 151
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + + + L N++ F+LDE D+ML S + + DIF+L
Sbjct: 152 RILQAGV-HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML-SRGFKDQIYDIFQLL 209
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLET 268
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 328
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADV 398
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 329 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDE 387
Query: 399 DVLNNVQSRFEVDIKQLPEQI 419
+L ++Q + V +++LP +
Sbjct: 388 RMLFDIQKFYNVVVEELPSNV 408
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 209/381 (54%), Gaps = 7/381 (1%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 24 YDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 82
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI YL +KV GG +++ +
Sbjct: 83 FCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ 141
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + + + L N++ F+LDE D+ML S + + DIF+L
Sbjct: 142 RILQAGV-HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML-SRGFKDQIYDIFQLL 199
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 200 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLET 258
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 259 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 318
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADV 398
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 319 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDE 377
Query: 399 DVLNNVQSRFEVDIKQLPEQI 419
+L ++Q + V +++LP +
Sbjct: 378 RMLFDIQKFYNVVVEELPSNV 398
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 207/381 (54%), Gaps = 7/381 (1%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI Y +KV GG +++ +
Sbjct: 93 FCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQ 151
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + R + L ++ F+LDE D+ML S + + DIF+L
Sbjct: 152 RILQAGV-HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEML-SRGFKDQIYDIFQLL 209
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEDWKLET 268
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 328
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADV 398
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 329 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLD-DQ 387
Query: 399 DVLNNVQSRFEVDIKQLPEQI 419
+L ++Q + V +++LP +
Sbjct: 388 RMLFDIQKFYNVVVEELPSNV 408
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 208/381 (54%), Gaps = 12/381 (3%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDDVHES-FDAMGLQENLLR-----GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 87
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI YL +KV GG +++ +
Sbjct: 88 FCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ 146
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + + + L N++ F+LDE D+ML S + + DIF+L
Sbjct: 147 RILQAGV-HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML-SRGFKDQIYDIFQLL 204
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 205 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLET 263
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 264 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 323
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADV 398
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 324 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDE 382
Query: 399 DVLNNVQSRFEVDIKQLPEQI 419
+L ++Q + V +++LP +
Sbjct: 383 RMLFDIQKFYNVVVEELPSNV 403
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 211/376 (56%), Gaps = 8/376 (2%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSL 105
+ F D +K ++LR + + GFE PS +Q + + G DVI QA+SG GKT++ LS
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 106 QQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNE 165
Q +D +V AL+L TRELA Q + + +++ GG + V +D+ + E
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLH-ANIQAHACIGGNS--VGEDIRKLE 151
Query: 166 -CPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQ 224
H+V GTPGR+ + + + L + ++ ILDE D+ML S + + D+++ P D Q
Sbjct: 152 HGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEML-SRGFKDQIYDVYRYLPPDLQ 210
Query: 225 VMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXX-XXX 283
V + SATL EI + KFM +P++I V + +LTL G+ Q ++
Sbjct: 211 VCLVSATLPHEILEMTSKFMTEPVKILVKRD-ELTLEGIKQFFVAVEKEEWKFDTLCDLY 269
Query: 284 DALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILV 343
D L Q VIF + + L + + NF +H M Q+ER F+ G +R+L+
Sbjct: 270 DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLI 329
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNN 403
TD+ RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D+ +L +
Sbjct: 330 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDIKILRD 388
Query: 404 VQSRFEVDIKQLPEQI 419
++ + I ++P +
Sbjct: 389 IEQYYSTQIDEMPMNV 404
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 195/355 (54%), Gaps = 6/355 (1%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI YL +KV GG +++ +
Sbjct: 93 FCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ 151
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + + + L N++ F+LDE D+ML S + + DIF+L
Sbjct: 152 RILQAGV-HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEML-SRGFKDQIYDIFQLL 209
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 210 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLET 268
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 328
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+
Sbjct: 329 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 206/381 (54%), Gaps = 12/381 (3%)
Query: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Y +H S F L+ LLR GFE PS +Q I G+DVI QA+SG GKTA
Sbjct: 34 YDEVHES-FDAMGLQENLLR-----GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 87
Query: 100 FVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
F LQQ+D Q ALVL TRELA QI Y +KV GG +++ +
Sbjct: 88 FCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQ 146
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+L+ H+VVGTPGR+ + R + L ++ F+LDE D+ML S + + DIF+L
Sbjct: 147 RILQAGV-HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEML-SRGFKDQIYDIFQLL 204
Query: 220 PHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXX 279
P QV +FSAT+ E I +KFM P+ I V + +LTL G+ Q Y+
Sbjct: 205 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEDWKLET 263
Query: 280 X-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+ L Q VIFV + + L + + H M Q R + F+ G
Sbjct: 264 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 323
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADV 398
+R+L+ TDL+ RGID+++V++VIN+D+P + YLHR+GR+GRFG KG+AI FV+ D
Sbjct: 324 SRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLD-DQ 382
Query: 399 DVLNNVQSRFEVDIKQLPEQI 419
+L ++Q + V +++LP +
Sbjct: 383 RMLFDIQKFYNVVVEELPSNV 403
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 218 bits (555), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 213/383 (55%), Gaps = 10/383 (2%)
Query: 36 TKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
T KG I S F D + ++LR + D G++ PSE+Q + + G DVI QA+SG G
Sbjct: 14 TTKGIKPIKS--FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTG 71
Query: 96 KTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNI 155
KT++ +S Q ++ +V LVL +RELA Q + + +++ GG +I
Sbjct: 72 KTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKSI 130
Query: 156 KVHKDLLRNE-CPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQD 214
+D+ + E H V GTPGR+ + + L K V+ +LDE D+ML S ++ + D
Sbjct: 131 --GEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEML-SKGLKDQIYD 187
Query: 215 IFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXX 274
+++ PHD QV + SATL +EI + +KFM DP+ I V + +LTL G+ Q+Y+
Sbjct: 188 VYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD-ELTLEGIKQYYVDVDKEE 246
Query: 275 XXXXXX-XXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKG 333
L NQ +IF + + L + + NF +H Q+ER
Sbjct: 247 WKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQ 306
Query: 334 FKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
F+ +R+L+A+D+ RGID++ V+ VINYD+P++ + Y+HR+GRAGRFG +G+AI FV
Sbjct: 307 FRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVK 366
Query: 394 CSADVDVLNNVQSRFEVDIKQLP 416
S+D+ L +++ + I+++P
Sbjct: 367 -SSDMKDLKDIERHYGTKIREMP 388
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 205/391 (52%), Gaps = 25/391 (6%)
Query: 45 SSGFRDFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFV 101
+S F D L PEL++ + V+ FE PS++Q +P + +I QA +G GKT FV
Sbjct: 90 ASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFV 149
Query: 102 LSSLQQIDPVPGQVSALVLCHTRELAYQ---ICHEFERFSTYLPDLKVAVFYGGVNIKVH 158
L L ++DP + AL +C TRELA Q + + +F+ +L V G
Sbjct: 150 LGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATR 209
Query: 159 KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKD----VQD 214
+ H+V+GTPG + K L L +++ + DE D ML + R D ++D
Sbjct: 210 GAPV---SAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKD 266
Query: 215 IFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIX--XXX 272
I ++ P + QV++FSAT ++ ++ + ++DP +++V E L L + Q+ +
Sbjct: 267 IGRVNP-NFQVLLFSATFNETVKDFVARTVKDPNQLFVKRE-DLALDSVKQYKVVCPKEQ 324
Query: 273 XXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYK 332
+ D Q +IFVK+ + A ++ K L E + +H +++ +R K K
Sbjct: 325 NKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVK 384
Query: 333 GFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADT-------YLHRVGRAGRFGTK 385
FKE T++L+ATD++ RG D +RVN+V+NY++P +T YLHRVGRAGRFG K
Sbjct: 385 EFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRK 444
Query: 386 GLAIT-FVSCSADVDVLNNVQSRFEVDIKQL 415
G + D +V+ ++ FE ++K++
Sbjct: 445 GAVFNLLLDDGWDKEVMEKIEKYFEANVKEI 475
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 193/359 (53%), Gaps = 17/359 (4%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F + ++ EL++A G+++PS++Q E +P A+ G DVI A++G GKT F + LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 108 I-------DPVPGQVS-----ALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNI 155
+ +P G+ A VL TRELA QI +FE + L+ AV GG++
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI-SLRCAVLVGGID- 128
Query: 156 KVHKDLLRNECPHIVVGTPGRILALTRD-KDLSLKNVRHFILDECDKMLESLDMRKDVQD 214
++ + + + PH++V TPGR+ D K SLK++++ +LDE D++L D K +
Sbjct: 129 RMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNE-DFEKSLNQ 187
Query: 215 IFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXX 274
I + P +++ +FSAT++K++R + + +++P++I + T+ L Q Y
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYS-TVDTLKQQYRFVAAKY 246
Query: 275 XXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGF 334
+ + +IF ++ L +L F +I I M+Q +RL F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 335 KEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
K G ILV TD+ RG+DI V++VINYD+P ++ Y+HRVGR R G G+ I+ V+
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVN 365
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 189/361 (52%), Gaps = 23/361 (6%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
FRD +L + +GF P+ +Q + P A+ G D+I A++G GKT ++L ++
Sbjct: 101 FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160
Query: 108 IDPVP------GQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KD 160
++ P G + LVL TRELA QI E +F + +K YGGV +D
Sbjct: 161 VNAQPMLAHGDGPI-VLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRD 218
Query: 161 LLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTP 220
L + IV+ TPGR++ + + +L+ V + +LDE D+ML DM D Q I K+
Sbjct: 219 LQKGV--EIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML---DMGFDPQ-IRKIVS 272
Query: 221 H---DKQVMMFSATLSKEIRPICKKFMQDPMEIYV---DDEAKLTLHGLVQHYIXXXXXX 274
H D+Q + +SAT KE+ + KKF+ +P ++ + D +A + +V +
Sbjct: 273 HIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVD--VISESQK 330
Query: 275 XXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGF 334
D +D +++++F+ + ++ + L +P++ IH SQ ER F
Sbjct: 331 YNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390
Query: 335 KEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSC 394
+ G + I+ ATD+ RG+D++ V VINYD P S + Y+HR+GR GR G KG A TF +
Sbjct: 391 RSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTV 450
Query: 395 S 395
+
Sbjct: 451 A 451
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 14/387 (3%)
Query: 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100
V H+ F + L LLRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 101 VLSSLQQIDPVPGQVSA---LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKV 157
L +L+++ P +V A L+L TRELA QI + + + D+K + GG++++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFT-DIKCGLIVGGLSVRE 280
Query: 158 HKDLLRNECPHIVVGTPGRILALTRDK-DLSLKNVRHFILDECDKMLESLDMRKDVQDIF 216
+ +LR+ P IVV TPGR++ R+ + L ++ ILDE D++L++ ++ ++
Sbjct: 281 QEVVLRS-MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT-GFATEITELV 338
Query: 217 KLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXX 276
+L P +Q M+FSAT+++E++ + K + P+ + D A+ GL + +
Sbjct: 339 RLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRP-PGLTEEVVRIRRTREA 397
Query: 277 XXXXXXXD--ALDFNQVVIFVKSVSRAAELDKLLVE-CNFPSICIHSGMSQEERLKRYKG 333
F VI +AA K+L + +H ++Q +RL +
Sbjct: 398 NQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLEL 457
Query: 334 FKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
F++ L+ATD+ RG+DI V VINY P D+Y+HRVGR R G +G A+TFV+
Sbjct: 458 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 517
Query: 394 CSADVDVLNNVQSRFEVDIKQ--LPEQ 418
S D +L + + +K +PEQ
Sbjct: 518 DS-DRSLLKVIAKKVGSKLKSRVIPEQ 543
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 189/355 (53%), Gaps = 15/355 (4%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F+D +L AI GF P+ +Q + P A+ G D+I A++G GKT ++L +L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 108 IDPVP--GQVSA---LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KDL 161
+ P GQ L+L TRELA QI E +F ++ YGG +DL
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG-LRSGVRSTCIYGGAPKGPQIRDL 285
Query: 162 LRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
R IV+ TPGR++ + + +LK V + +LDE D+ML+ + ++ I
Sbjct: 286 RRGV--EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVSQIRP 342
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYV---DDEAKLTLHGLVQHYIXXXXXXXXXX 278
D+Q +++SAT +E+ + ++F++DP + + D +A +++ +++ I
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIE--IVPTPEKYNRL 400
Query: 279 XXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+D ++++IFV++ ++ + L +P++ IH +Q ER + FK G
Sbjct: 401 LTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
Query: 339 TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
+ I+ ATD+ RG+D++ + V+NYD P++ + Y+HR+GR GR G KG+A TF +
Sbjct: 461 SPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFT 515
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 11/347 (3%)
Query: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTR 124
G P+ VQ C+P+ + G DV+ A++G GKTA F L L ++ P V ALV+ TR
Sbjct: 77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTR 136
Query: 125 ELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRI-LALTRD 183
ELA+Q+ +F+ + L +L+ +V GG+++ L + PHIV+ TPGRI + L +
Sbjct: 137 ELAFQLAEQFKALGSCL-NLRCSVIVGGMDMLTQTMSLVSR-PHIVITTPGRIKVLLENN 194
Query: 184 KDLS--LKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICK 241
D+ + +LDE D++L+ + + +++ IF+ P +Q ++FSAT++ ++ + +
Sbjct: 195 PDVPPVFSRTKFLVLDEADRVLD-VGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Query: 242 KFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALD---FNQVVIFVKSV 298
+ Y E T+ L Q +I ++ +IFV +
Sbjct: 254 -HSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTC 312
Query: 299 SRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVN 358
L +L E +I +HS SQ RL FK G IL+ATD+ RG+DI V+
Sbjct: 313 RTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVD 372
Query: 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQ 405
+VINYD+P Y+HRVGR R G GLA++ ++ DV +++ ++
Sbjct: 373 LVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT-ETDVKLIHKIE 418
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 181/354 (51%), Gaps = 24/354 (6%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQI---- 108
+ PE+++A+ G E +Q + A+ G D+I +A++G GKT F + + +I
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 170
Query: 109 -------DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDL 161
+P+ LVL TRELA Q+ EF + P L YGG I
Sbjct: 171 AKHGRGRNPL-----CLVLAPTRELARQVEKEFRESA---PSLDTICLYGGTPIGQQMRQ 222
Query: 162 LRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
L + + VGTPGR++ L + L+L V+ +LDE D+ML+ + +DV+ I + P
Sbjct: 223 L-DYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQ-VGFAEDVEIILEKLPE 280
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYV--DDEAKLTLHGLVQHYIXXXXXXXXXXX 279
+Q MMFSAT+ IR + KK++ +P+ + + D + KL I
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIG 340
Query: 280 XXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHT 339
+ + ++F ++ A L L +F +H +SQ +R + GF++GH
Sbjct: 341 PLVTEHAKGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHF 399
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
ILVATD+ RG+D+ V+++I+Y++P++ +T++HR GR GR G KG AI S
Sbjct: 400 NILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYS 453
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 175/347 (50%), Gaps = 12/347 (3%)
Query: 50 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQID 109
D + PE+++A+ G E +Q + A+ G D+I +A++G GKT F + + +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 110 PVPGQ------VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLR 163
+ LVL TRELA Q+ EF + P L YGG I L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESA---PSLDTICLYGGTPIGQQMREL- 235
Query: 164 NECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDK 223
N + VGTPGRI+ L + L+L V+ +LDE D+ML+ + +DV+ I + P +
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQ-VGFAEDVEIILQKLPAKR 294
Query: 224 QVMMFSATLSKEIRPICKKFMQDPMEI-YVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXX 282
Q MMFSAT+ IR + KK++ +P+ I V D + G+ + I
Sbjct: 295 QSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPL 354
Query: 283 XDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRIL 342
I R A+ + ++ +H +SQ +R + GF++G+ IL
Sbjct: 355 VKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSIL 414
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
VATD+ RG+D+ V++VI+Y++P++ +T++HR GR GR G KG AI
Sbjct: 415 VATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI 461
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 177/371 (47%), Gaps = 29/371 (7%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
+ + L ELL+A+ +G++ PS +Q IP + DVI A++G GKTA FVL L
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374
Query: 108 IDPVPGQVS--------ALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
I +P A+V+ TRELA QI E +F+ YL +V GG +I+
Sbjct: 375 ISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTSIVGGQSIEEQG 433
Query: 160 DLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLT 219
+ C IV+ TPGR++ + L + +LDE D+M++ + V +
Sbjct: 434 LKITQGC-EIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-MGFEPQVAGVLDAM 491
Query: 220 PHD-----------------KQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHG 262
P + MFSAT+ + + +K++++P+ + + K T
Sbjct: 492 PSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTT-DL 550
Query: 263 LVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
+ QH I D L ++FV + + K L + + +H G
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGK 610
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
SQE+R +GF+ +LVATD+VGRGIDI V VINYDMP + Y HR+GR GR
Sbjct: 611 SQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA 670
Query: 383 GTKGLAITFVS 393
G G+A +F++
Sbjct: 671 GKSGVATSFLT 681
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 193/399 (48%), Gaps = 25/399 (6%)
Query: 31 VNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
V+G + ++GF PELLR ++ +GF P+ +Q + P A+ G D++ A
Sbjct: 148 VSGGQVPPPLMSFEATGF-----PPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIA 202
Query: 91 KSGMGKTAVFVLSS---LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLK 145
K+G GKT +++ LQ+I D G + LVL TRELA QI E +F +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGP-TILVLSPTRELATQIQEEAVKFGRSS-RIS 260
Query: 146 VAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE 204
YGG +DL R IVV TPGR+ + + +SL+ + + +LDE D+ML+
Sbjct: 261 CTCLYGGAPKGPQLRDLERGA--DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 205 SLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH-GL 263
+ ++ I K P +Q +M++AT K +R I + +P ++ + + +L + +
Sbjct: 319 -MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSI 377
Query: 264 VQHY-IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
QH + ++V+IF + +L + L F + IH
Sbjct: 378 TQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDK 436
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
SQ ER F+ G T +LVATD+ RG+D++ + V+NYD P+ + Y+HR+GR GR
Sbjct: 437 SQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA 496
Query: 383 GTKGLAITFVS------CSADVDVLNNVQSRFEVDIKQL 415
G G A TF S + +L R I+++
Sbjct: 497 GATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 193/399 (48%), Gaps = 25/399 (6%)
Query: 31 VNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
V+G + ++GF PELLR ++ +GF P+ +Q + P A+ G D++ A
Sbjct: 148 VSGGQVPPPLMSFEATGF-----PPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIA 202
Query: 91 KSGMGKTAVFVLSS---LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLK 145
K+G GKT +++ LQ+I D G + LVL TRELA QI E +F +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGP-TILVLSPTRELATQIQEEAVKFGRSS-RIS 260
Query: 146 VAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE 204
YGG +DL R IVV TPGR+ + + +SL+ + + +LDE D+ML+
Sbjct: 261 CTCLYGGAPKGPQLRDLERGA--DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 205 SLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH-GL 263
+ ++ I K P +Q +M++AT K +R I + +P ++ + + +L + +
Sbjct: 319 -MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSI 377
Query: 264 VQHY-IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
QH + ++V+IF + +L + L F + IH
Sbjct: 378 TQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDK 436
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
SQ ER F+ G T +LVATD+ RG+D++ + V+NYD P+ + Y+HR+GR GR
Sbjct: 437 SQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA 496
Query: 383 GTKGLAITFVS------CSADVDVLNNVQSRFEVDIKQL 415
G G A TF S + +L R I+++
Sbjct: 497 GATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 193/399 (48%), Gaps = 25/399 (6%)
Query: 31 VNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
V+G + ++GF PELLR ++ +GF P+ +Q + P A+ G D++ A
Sbjct: 148 VSGGQVPPPLMSFEATGF-----PPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIA 202
Query: 91 KSGMGKTAVFVLSS---LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLK 145
K+G GKT +++ LQ+I D G + LVL TRELA QI E +F +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGP-TILVLSPTRELATQIQEEAVKFGRSS-RIS 260
Query: 146 VAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE 204
YGG +DL R IVV TPGR+ + + +SL+ + + +LDE D+ML+
Sbjct: 261 CTCLYGGAPKGPQLRDLERGA--DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 205 SLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH-GL 263
+ ++ I K P +Q +M++AT K +R I + +P ++ + + +L + +
Sbjct: 319 -MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSI 377
Query: 264 VQHY-IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
QH + ++V+IF + +L + L F + IH
Sbjct: 378 TQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDK 436
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
SQ ER F+ G T +LVATD+ RG+D++ + V+NYD P+ + Y+HR+GR GR
Sbjct: 437 SQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA 496
Query: 383 GTKGLAITFVS------CSADVDVLNNVQSRFEVDIKQL 415
G G A TF S + +L R I+++
Sbjct: 497 GATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 193/399 (48%), Gaps = 25/399 (6%)
Query: 31 VNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
V+G + ++GF PELLR ++ +GF P+ +Q + P A+ G D++ A
Sbjct: 148 VSGGQVPPPLMSFEATGF-----PPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIA 202
Query: 91 KSGMGKTAVFVLSS---LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLK 145
K+G GKT +++ LQ+I D G + LVL TRELA QI E +F +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGP-TILVLSPTRELATQIQEEAVKFGRSS-RIS 260
Query: 146 VAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE 204
YGG +DL R IVV TPGR+ + + +SL+ + + +LDE D+ML+
Sbjct: 261 CTCLYGGAPKGPQLRDLERGA--DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 205 SLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH-GL 263
+ ++ I K P +Q +M++AT K +R I + +P ++ + + +L + +
Sbjct: 319 -MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSI 377
Query: 264 VQHY-IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
QH + ++V+IF + +L + L F + IH
Sbjct: 378 TQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDK 436
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
SQ ER F+ G T +LVATD+ RG+D++ + V+NYD P+ + Y+HR+GR GR
Sbjct: 437 SQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA 496
Query: 383 GTKGLAITFVS------CSADVDVLNNVQSRFEVDIKQL 415
G G A TF S + +L R I+++
Sbjct: 497 GATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 178/355 (50%), Gaps = 14/355 (3%)
Query: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSS 104
++GF +L+ P R + +GF PS +Q + P A+ D++ AK+G GKT +++
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 105 ---LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH- 158
LQ+I D G + LVL TRELA QI E +F + A YGG
Sbjct: 288 FMHLQRIHNDSRMGP-TILVLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQL 345
Query: 159 KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKL 218
K++ R IVV TPGR+ + K +SL V + +LDE D+ML+ + ++ I
Sbjct: 346 KEIERGV--DIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLD-MGFEPQIRKIVNE 402
Query: 219 TPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXX 278
P +Q +M++AT KE+R I + +P ++ + + +L + + I
Sbjct: 403 VPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHS 462
Query: 279 XXXX--XDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKE 336
++++IF + +L + L F + IH SQ ER F+
Sbjct: 463 RLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 521
Query: 337 GHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
G T +LVATD+ RG+D++ + +V+NYD P+ + Y+HR+GR GR G GLA TF
Sbjct: 522 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTF 576
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 16/342 (4%)
Query: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSA------- 117
G H +Q + A+ G D+I +AK+G GKT F + ++++ G +A
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 118 ---LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTP 174
LVL TRELA Q+ E + + YL + V YGGV+ + + L +VVGTP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSALTRGV-DVVVGTP 236
Query: 175 GRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSK 234
GRI+ L + L L V + +LDE D+ML ++ + V+ I + P +Q M+FSAT+
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQML-AVGFEEAVESILENLPTKRQSMLFSATMPT 295
Query: 235 EIRPICKKFMQDPMEI-YVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVI 293
++ + +K++ +P+ I V D+ + G+ + I I
Sbjct: 296 WVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTI 355
Query: 294 FVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGID 353
R A+ L + + + +H +SQ +R + F++G +LVATD+ RG+D
Sbjct: 356 VFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLD 415
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCS 395
I V++VI+Y++P+ +T++HR GR GR G +G AI + S
Sbjct: 416 IPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 16/342 (4%)
Query: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSA------- 117
G H +Q + A+ G D+I +AK+G GKT F + ++++ G +A
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 118 ---LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTP 174
LVL TRELA Q+ E + + YL + V YGGV+ + + L +VVGTP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSALTRGV-DVVVGTP 236
Query: 175 GRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSK 234
GRI+ L + L L V + +LDE D+ML ++ + V+ I + P +Q M+FSAT+
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQML-AVGFEEAVESILENLPTKRQSMLFSATMPT 295
Query: 235 EIRPICKKFMQDPMEI-YVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVI 293
++ + +K++ +P+ I V D+ + G+ + I I
Sbjct: 296 WVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTI 355
Query: 294 FVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGID 353
R A+ L + + + +H +SQ +R + F++G +LVATD+ RG+D
Sbjct: 356 VFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLD 415
Query: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCS 395
I V++VI+Y++P+ +T++HR GR GR G +G AI + S
Sbjct: 416 IPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 175/352 (49%), Gaps = 14/352 (3%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSS--- 104
F L ELLR + +GF PS +Q + P A+ D++ AK+G GKT +++
Sbjct: 163 FEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 222
Query: 105 LQQI--DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KDL 161
LQ+I D G + LVL TRELA QI E +F + A YGG K++
Sbjct: 223 LQRIHNDSRMGP-TILVLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQLKEI 280
Query: 162 LRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
R IVV TPGR+ + K +SL V + +LDE D+ML+ + ++ I P
Sbjct: 281 ERGV--DIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLD-MGFEPQIRKIVNEVPT 337
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXX 281
+Q +M++AT KE+R I + +P ++ + + +L + + I
Sbjct: 338 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 397
Query: 282 X--XDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHT 339
++++IF + +L + L F + IH SQ ER F+ G T
Sbjct: 398 QILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRT 456
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
+LVATD+ RG+D++ + +V+NYD P+ + Y+HR+GR GR G GLA TF
Sbjct: 457 PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTF 508
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 180/355 (50%), Gaps = 14/355 (3%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F D +++ AI +E P+ +Q + +P + G DVI AK+G GKTA FVL +
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 108 IDPVP------GQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDL 161
I P G + ++ TRELA+QI E ++FS L+V+ YGG++
Sbjct: 290 IMDQPELQRDEGPI-GVICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGGMSKHEQFKE 347
Query: 162 LRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
L+ C IVV TPGR++ + + K L++ + +LDE D+M + L V+ I
Sbjct: 348 LKAGC-EIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD-LGFEPQVRSIVGQIRP 405
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQ--HYIXXXXXXXXXXX 279
D+Q ++FSAT+ ++ + ++ + DP+ + V E + + Q + I
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVG-EVGMANEDITQVVNVIPSDAEKLPWLL 464
Query: 280 XXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHT 339
+D V++F + E++ L +F +H Q R++ + FK G
Sbjct: 465 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524
Query: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-GLAITFVS 393
+L+ATD+ RG+DI+ + V+NYD+ D ++HR+GR GR G + G+A T V+
Sbjct: 525 HVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVT 579
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 175/346 (50%), Gaps = 25/346 (7%)
Query: 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVF---VLSSL---QQIDPVPGQVS----AL 118
P+ VQ IP G D++ A++G GKTA F ++S + Q I+ G A+
Sbjct: 169 PTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAV 228
Query: 119 VLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRI 177
+L TRELA QI E +FS Y +KV V YGG + ++L R I+V TPGR+
Sbjct: 229 ILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPVNQQIRELERGV--DILVATPGRL 285
Query: 178 LALTRDKDLSLKNVRHFILDECDKMLE---SLDMRKDVQDIFKLTPHDKQVMMFSATLSK 234
L +SL+ VR LDE D+ML+ +RK VQ + P +Q M+FSAT +
Sbjct: 286 NDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPR 345
Query: 235 EIRPICKKFMQDPMEIYVDDEAKLTLHGLVQH--YIXXXXXXXXXXXXXXXDALDFNQ-- 290
EI+ + F+ + + + V T +VQ ++ + NQ
Sbjct: 346 EIQRLASDFLSNYIFLAVGRVGSST-DLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGK 404
Query: 291 ---VVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDL 347
++FV++ A L+ L FP+ IH SQ+ER + FK G T ILVATD+
Sbjct: 405 QALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDV 464
Query: 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
RG+DI V V+N+D+P+ D Y+HR+GR GR G GLA F +
Sbjct: 465 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN 510
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 189/397 (47%), Gaps = 20/397 (5%)
Query: 31 VNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
GE Y+ SSG L PE+LR ++ +GF P+ +Q + P A+ D++ A
Sbjct: 425 TTGENIPAPYITFESSG-----LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIA 479
Query: 91 KSGMGKT-----AVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLK 145
K+G GKT F+L + D G + L+L TRELA QI E RF +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSRNG-PTVLILAPTRELATQIQDEALRFGRSS-RIS 537
Query: 146 VAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE 204
YGG K+L R IVV TPGR+ + K + + V +LDE D+ML+
Sbjct: 538 CTCLYGGAPKGPQLKELERGA--DIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
Query: 205 SLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLV 264
+ ++ I P +Q +M++AT KE+R I + +P+++ + +L + +
Sbjct: 596 -MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAI 654
Query: 265 QHYIXXXXXXXXXXXXXX--XDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGM 322
Y+ ++V+IF S R + V +F ++ IH
Sbjct: 655 TQYVEVVPQMEKERRLEQILRSQERGSKVIIFC-STKRLCDHLARSVGRHFGAVVIHGDK 713
Query: 323 SQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
+Q ER F+ G + +L+ATD+ RG+DI+ + +VINYD P + Y+HR+GR GR
Sbjct: 714 TQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA 773
Query: 383 GTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQI 419
G G+A TF + D ++ E +Q+P Q+
Sbjct: 774 GATGVAFTFFT-EQDWKYAPDLIKVLEGANQQVPPQV 809
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 168/327 (51%), Gaps = 16/327 (4%)
Query: 80 AILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSA----------LVLCHTRELAYQ 129
A+ G D+I +AK+G GKT F + ++++ G +A LVL TRELA Q
Sbjct: 43 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 102
Query: 130 ICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLK 189
+ E + + YL + V YGGV+ + + L +VVGTPGRI+ L + L L
Sbjct: 103 VEKEIKESAPYLSTVCV---YGGVSYTIQQSALTRGV-DVVVGTPGRIIDLIEGRSLKLG 158
Query: 190 NVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPME 249
V + +LDE D+ML ++ + V+ I + P +Q M+FSAT+ ++ + +K++ +P+
Sbjct: 159 EVEYLVLDEADQML-AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLN 217
Query: 250 I-YVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLL 308
I V D+ + G+ + I I R A+ L
Sbjct: 218 IDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA 277
Query: 309 VECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDS 368
+ + + +H +SQ +R + F++G +LVATD+ RG+DI V++VI+Y++P+
Sbjct: 278 LSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPND 337
Query: 369 ADTYLHRVGRAGRFGTKGLAITFVSCS 395
+T++HR GR GR G +G AI + S
Sbjct: 338 PETFVHRSGRTGRAGKEGSAILMHTSS 364
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 178/360 (49%), Gaps = 19/360 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS---- 103
F D LLR + D G HP+ +Q + +P + G D+I A +G GKT VFVL
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
Query: 104 SLQQIDPVPGQVS----ALVLCHTRELAYQICHEFERFSTYL-----PDLKVAVFYGGVN 154
+LQ+ +P ALV+C +RELA Q E+F L P L+ + GGV+
Sbjct: 159 ALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVD 218
Query: 155 IKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQD 214
++ D+++ HIVV TPGR+ + K +SL R LDE D++++ L D++
Sbjct: 219 MRSQLDVVKKGV-HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD-LGFEDDIRH 276
Query: 215 IFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQ-HYIXXXXX 273
+F +Q ++FSAT+ +I+ + P+ + V L + + Y+
Sbjct: 277 VFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 336
Query: 274 XXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKG 333
V+IF ++ + ++ + L+ ++ IH G QE+R
Sbjct: 337 IVYLLECLQKTT---PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISL 393
Query: 334 FKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
FK G +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 180/360 (50%), Gaps = 19/360 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLS---- 103
F+D +L + + G P+ +Q + +P + G D+I A +G GKT VFVL
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 104 SLQQIDPVPGQVS----ALVLCHTRELAYQICHEFERFSTYL-----PDLKVAVFYGGVN 154
+LQ+ +P L++C +RELA Q E+F L P L+ + GG++
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGID 267
Query: 155 IKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQD 214
++ ++++ HIVV TPGR+ + K +SL R+ LDE D++++ L D+++
Sbjct: 268 MRSQLEVVKRGV-HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD-LGFEDDIRE 325
Query: 215 IFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQ-HYIXXXXX 273
+F +Q ++FSAT+ +I+ + + P+ + V L + + Y+
Sbjct: 326 VFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 385
Query: 274 XXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKG 333
+ V+IF ++ + ++ + L+ ++ IH G QE+R
Sbjct: 386 IVYLLECLQKTS---PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 442
Query: 334 FKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
FK G +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++
Sbjct: 443 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 176/350 (50%), Gaps = 33/350 (9%)
Query: 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVF---VLSSL---QQIDPVPGQVS----AL 118
P+ VQ IP + G D++ A++G GKTA F ++S + Q + G + A+
Sbjct: 182 PTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAV 241
Query: 119 VLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KDLLRNECPHIVVGTPGRI 177
+L TRELA QI E ++FS Y +KV V YGG I ++L R I+V TPGR+
Sbjct: 242 ILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPINQQLRELERGV--DILVATPGRL 298
Query: 178 LALTRDKDLSLKNVRHFILDECDKMLE---SLDMRKDVQDIFKLTPHD-KQVMMFSATLS 233
L +S++ +R LDE D+ML+ +RK V+ + + P +Q ++FSAT
Sbjct: 299 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM-DMPPRGVRQTLLFSATFP 357
Query: 234 KEIRPICKKFMQDPMEIYVD----------DEAKLTLHGLVQHYIXXXXXXXXXXXXXXX 283
+EI+ + F+ + + + V + L + ++
Sbjct: 358 REIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGK 417
Query: 284 DALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILV 343
AL ++FV++ A L+ L FP+ IH +Q+ER K FK G T ILV
Sbjct: 418 QAL----TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILV 473
Query: 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
ATD+ RG+DI V V+N+D+P+ D Y+HR+GR GR G GLA F +
Sbjct: 474 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 523
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 177/364 (48%), Gaps = 20/364 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F + L P L+AI D+G+E + VQ +P + G DV+ +AK+G GKT F+L S++
Sbjct: 322 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 381
Query: 108 IDPVPGQ--------VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
+ P + ALV+C TRELA Q E Y P + V V GG + + +
Sbjct: 382 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 441
Query: 160 DLLRNECPHIVVGTPGRI---LALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIF 216
++ I+V TPGR+ + T LK V+ +LDE D +L+ + RKD++ I
Sbjct: 442 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLD-MGFRKDIERII 500
Query: 217 KLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVD--DEAKLTLHGLVQ--HYIXXXX 272
P ++Q +FSAT+ +E+R IC ++ E +V+ E + H V+ H I
Sbjct: 501 SAVPKERQTFLFSATVPEEVRQICLVALRRDHE-FVNCVHEGTIETHQQVRQMHMIASLD 559
Query: 273 XXXXXXXXXXXDALDFN---QVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLK 329
+ + N +V++F + + LL E N IHS Q R +
Sbjct: 560 RHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTR 619
Query: 330 RYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
F++ ILV +D+ RG+D V +V+ +P + Y+HR+GR GR G +G I
Sbjct: 620 VSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGI 679
Query: 390 TFVS 393
++
Sbjct: 680 LLLA 683
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 187/375 (49%), Gaps = 22/375 (5%)
Query: 30 KVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ 89
KV+G+ + H +G L ++L + +E P +Q + +P + G D I
Sbjct: 180 KVHGKDVPRPIKFWHQTG-----LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGV 234
Query: 90 AKSGMGKTAVFVLSSLQQIDPVP------GQVSALVLCHTRELAYQICHEFERFSTYLPD 143
AK+G GKT FVL L+ I P G + LV+ TREL QI + +FS L
Sbjct: 235 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI-GLVMAPTRELVQQIHSDIRKFSKPL-G 292
Query: 144 LKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGR---ILALTRDKDLSLKNVRHFILDECD 200
++ YGG + L+ IVV TPGR IL + K +L+ V ++DE D
Sbjct: 293 IRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD 351
Query: 201 KMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLT- 259
+M + + + I + ++Q ++FSAT +++ + +K + P+EI V + +
Sbjct: 352 RMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNK 410
Query: 260 -LHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICI 318
+ LV+ + + + ++++FV+S + L + +++ ++P + +
Sbjct: 411 DITQLVE--VRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSL 468
Query: 319 HSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
H G Q +R FK +L+AT + RG+D++ + +V+N+D P+ + Y+HRVGR
Sbjct: 469 HGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGR 528
Query: 379 AGRFGTKGLAITFVS 393
GR G KG A+TF+S
Sbjct: 529 TGRAGRKGCAVTFIS 543
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 177/372 (47%), Gaps = 35/372 (9%)
Query: 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVP-----GQVS-- 116
S HP E IP + DVI + +G GKTA FVL L I +P Q
Sbjct: 220 SKIPHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGP 279
Query: 117 -ALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPG 175
ALV+ TRELA+QI E +FS YL K G +I+ L C IV+ TPG
Sbjct: 280 YALVMVPTRELAHQIEEETVKFSRYL-GFKAVSITGWESIEKQALKLSQGC-EIVIATPG 337
Query: 176 RILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHD------------- 222
R+L + + L + +LDE D+M++ +D V ++ + P
Sbjct: 338 RLLDCLERRYVVLNQCNYLVLDEADRMID-MDFEPQVSEVLDVMPCSNLKPEKEDEELEE 396
Query: 223 ----KQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXX 278
+ MFSAT+ + + +KF+++P+ + + + K + Q I
Sbjct: 397 KKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIGETTKF----ITQQVIMTKESDKFSR 452
Query: 279 XXXXXDAL-DFNQVVIFVKSVSRAAELDKLLVECNFPSIC-IHSGMSQEERLKRYKGFKE 336
D L D ++FV + ++ + K L + + +H+G SQE+R + FK+
Sbjct: 453 LKKLIDDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKK 512
Query: 337 GHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSA 396
+LV TD++GRG+DI + VINYDMP++ D Y HR+GR GR G G+A TF++
Sbjct: 513 KRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLE- 571
Query: 397 DVDVLNNVQSRF 408
D DV ++ +
Sbjct: 572 DKDVFYGLKQKL 583
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 180/351 (51%), Gaps = 9/351 (2%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F L P + AI G++ P+ +Q + +P + G+DV+ A++G GKTA F++ L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 108 IDP-VP-GQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNE 165
+ VP G V AL+L TR+LA Q +F + DL+V++ GG +++ + L +
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTL-KFTKELGKFTDLRVSLLVGGDSMEDQFEEL-TK 147
Query: 166 CPHIVVGTPGRILALTRD-KDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQ 224
P +++ TPGR++ L + D++L+ V + + DE D + + + + I ++Q
Sbjct: 148 GPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLF-GMGFAEQLHQILTQLSENRQ 206
Query: 225 VMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXD 284
++FSATL + K +++P + +D E K++ + +
Sbjct: 207 TLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVRE 266
Query: 285 ALDFNQ-VVIFVKSVSRAAELDKLLVECNF-PSICIHSGMSQEERLKRYKGFKEGHTRIL 342
+ +Q +IFV + ++ L N PS+C + M Q+ R F+ T +L
Sbjct: 267 HISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKIHVSRFRARKTMLL 325
Query: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
+ TD+ RGIDI ++ VIN+D P ++HRVGRA R G G A +FV+
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVT 376
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 181/377 (48%), Gaps = 23/377 (6%)
Query: 36 TKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
T G V + F D L L I + P+ VQ IP + D++ A++G G
Sbjct: 141 TSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSG 200
Query: 96 KTAVF---VLSSL---QQIDPVPGQVS----ALVLCHTRELAYQICHEFERFSTYLPDLK 145
KTA F ++S + Q ++ G + A++L TRELA QI E ++FS Y +K
Sbjct: 201 KTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVK 259
Query: 146 VAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE- 204
V V YGG I L C I+V TPGR+ L +S++ +R LDE D+ML+
Sbjct: 260 VVVAYGGTPIHQQLRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 205 --SLDMRKDVQDIFKLTPHD-KQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH 261
+RK V+ + + P +Q M+FSAT +I+ + FM + + + V T
Sbjct: 319 GFEPQIRKIVEQM-DMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST-D 376
Query: 262 GLVQHYIXXXXXXXXXXXXXXXDALDFNQ-----VVIFVKSVSRAAELDKLLVECNFPSI 316
+ Q A Q ++FV++ A L+ L FP+
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 317 CIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH +Q+ER + FK G T ILVATD+ RG+DI V V+N+D+P+ D Y+HR+
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 377 GRAGRFGTKGLAITFVS 393
GR GR G G+A F +
Sbjct: 497 GRTGRAGKSGIATAFFN 513
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 181/377 (48%), Gaps = 23/377 (6%)
Query: 36 TKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
T G V + F D L L I + P+ VQ IP + D++ A++G G
Sbjct: 141 TSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSG 200
Query: 96 KTAVF---VLSSL---QQIDPVPGQVS----ALVLCHTRELAYQICHEFERFSTYLPDLK 145
KTA F ++S + Q ++ G + A++L TRELA QI E ++FS Y +K
Sbjct: 201 KTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVK 259
Query: 146 VAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE- 204
V V YGG I L C I+V TPGR+ L +S++ +R LDE D+ML+
Sbjct: 260 VVVAYGGTPIHQQLRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 205 --SLDMRKDVQDIFKLTPHD-KQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH 261
+RK V+ + + P +Q M+FSAT +I+ + FM + + + V T
Sbjct: 319 GFEPQIRKIVEQM-DMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST-D 376
Query: 262 GLVQHYIXXXXXXXXXXXXXXXDALDFNQ-----VVIFVKSVSRAAELDKLLVECNFPSI 316
+ Q A Q ++FV++ A L+ L FP+
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 317 CIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH +Q+ER + FK G T ILVATD+ RG+DI V V+N+D+P+ D Y+HR+
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 377 GRAGRFGTKGLAITFVS 393
GR GR G G+A F +
Sbjct: 497 GRTGRAGKSGIATAFFN 513
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 181/377 (48%), Gaps = 23/377 (6%)
Query: 36 TKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
T G V + F D L L I + P+ VQ IP + D++ A++G G
Sbjct: 141 TSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSG 200
Query: 96 KTAVF---VLSSL---QQIDPVPGQVS----ALVLCHTRELAYQICHEFERFSTYLPDLK 145
KTA F ++S + Q ++ G + A++L TRELA QI E ++FS Y +K
Sbjct: 201 KTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVK 259
Query: 146 VAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE- 204
V V YGG I L C I+V TPGR+ L +S++ +R LDE D+ML+
Sbjct: 260 VVVAYGGTPIHQQLRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 205 --SLDMRKDVQDIFKLTPHD-KQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH 261
+RK V+ + + P +Q M+FSAT +I+ + FM + + + V T
Sbjct: 319 GFEPQIRKIVEQM-DMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST-D 376
Query: 262 GLVQHYIXXXXXXXXXXXXXXXDALDFNQ-----VVIFVKSVSRAAELDKLLVECNFPSI 316
+ Q A Q ++FV++ A L+ L FP+
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 317 CIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 376
IH +Q+ER + FK G T ILVATD+ RG+DI V V+N+D+P+ D Y+HR+
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 377 GRAGRFGTKGLAITFVS 393
GR GR G G+A F +
Sbjct: 497 GRTGRAGKSGIATAFFN 513
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 179/382 (46%), Gaps = 20/382 (5%)
Query: 30 KVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ 89
K GE K + + F F L P L+AI D+GFE + VQ +P + G DV+ +
Sbjct: 366 KPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAK 425
Query: 90 AKSGMGKTAVFVLSSLQQIDPVPGQ--------VSALVLCHTRELAYQICHEFERFSTYL 141
AK+G GKT F+L +++ + P + LV+C TRELA Q E Y
Sbjct: 426 AKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYH 485
Query: 142 PDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRI---LALTRDKDLSLKNVRHFILDE 198
P + V V GG + + ++ I+V TPGR+ + T L V+ +LDE
Sbjct: 486 PSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDE 545
Query: 199 CDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIY--VDDEA 256
D +L+ + R+D++ I P +Q +FSAT+ +E+R IC ++ E V + +
Sbjct: 546 ADHLLD-MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGS 604
Query: 257 KLTLHGLVQHYIXXXXXXXXXX-----XXXXXDALDFNQVVIFVKSVSRAAELDKLLVEC 311
T + Q Y+ D +D+ +V+IF + + LL +
Sbjct: 605 GETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDY-KVIIFCTTAMVTRLVADLLSQL 663
Query: 312 NFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADT 371
+ IHS Q R + F++ ILV +D+ RG+D V++V+ +P +
Sbjct: 664 SLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQ 723
Query: 372 YLHRVGRAGRFGTKGLAITFVS 393
Y+HR+GR GR G +G + ++
Sbjct: 724 YIHRLGRTGRKGKEGEGVLLLA 745
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 171/341 (50%), Gaps = 16/341 (4%)
Query: 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF----VLSSLQQIDPVPG-----QVS 116
FE PS +Q P + G D+I AK+G GKT F ++ L++ + G +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 117 ALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGR 176
LVL TRELA QI + R + LK YGG + +R+ IV+GTPGR
Sbjct: 194 CLVLSPTRELAVQIS-DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV-DIVIGTPGR 251
Query: 177 ILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEI 236
+ L L L +V +LDE D+ML+ + + V+ I T +Q++MFSAT ++
Sbjct: 252 LRDLIESNVLRLSDVSFVVLDEADRMLD-MGFEEPVRFILSNTNKVRQMVMFSATWPLDV 310
Query: 237 RPICKKFMQ-DPMEIY---VDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVV 292
+ ++FM +P+++ VD A + +++ N+V+
Sbjct: 311 HKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVL 370
Query: 293 IFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGI 352
+F A L++ L + + ++ IH +Q ER + FKEG +LVATD+ RG+
Sbjct: 371 VFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGL 430
Query: 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
DI V +VINY P + + Y+HR+GR GR G KG+A TF +
Sbjct: 431 DIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 187/375 (49%), Gaps = 22/375 (5%)
Query: 30 KVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ 89
KV+G+ + H +G L ++L + +E P +Q + +P + G D I
Sbjct: 518 KVHGKDVPRPIKFWHQTG-----LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGV 572
Query: 90 AKSGMGKTAVFVLSSLQQIDPVP------GQVSALVLCHTRELAYQICHEFERFSTYLPD 143
AK+G GKT FVL L+ I P G + LV+ TREL QI + +FS L
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI-GLVMAPTRELVQQIHSDIRKFSKPL-G 630
Query: 144 LKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGR---ILALTRDKDLSLKNVRHFILDECD 200
++ YGG + L+ IVV TPGR IL + K +L+ V ++DE D
Sbjct: 631 IRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEAD 689
Query: 201 KMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLT- 259
+M + + + I + ++Q ++FSAT +++ + +K + P+EI V + +
Sbjct: 690 RMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNK 748
Query: 260 -LHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICI 318
+ LV+ + + + ++++FV+S + L + +++ ++P + +
Sbjct: 749 DITQLVE--VRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSL 806
Query: 319 HSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
H G Q +R FK +L+AT + RG+D++ + +V+N+D P+ + Y+HRVGR
Sbjct: 807 HGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGR 866
Query: 379 AGRFGTKGLAITFVS 393
GR G KG A+TF+S
Sbjct: 867 TGRAGRKGCAVTFIS 881
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 172/364 (47%), Gaps = 20/364 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F F L P L+ I D+GF+ + VQ +P + G D++ +AK+G GKT F+L S++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 108 IDPVPGQ--------VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
+ P + LV+C TRELA Q E Y P + V V GG + +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 160 DLLRNECPHIVVGTPGRI---LALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIF 216
L+ I+V TPGR+ + T L V+ +LDE D +L+ + R++++ I
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD-MGFRREIERII 260
Query: 217 KLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIY--VDDEAKLTLHGLVQHYIXXX--- 271
P +Q +FSAT+S E+R IC ++ E V + A T + Q Y+
Sbjct: 261 AAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDR 320
Query: 272 --XXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLK 329
D + + +V+IF + + LL + + IHS Q R +
Sbjct: 321 HFSLLYGLLKKHITDNVGY-KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTR 379
Query: 330 RYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
F++ + ILV +D+ RG+D V++V+ +P + Y+HR+GR GR G +G +
Sbjct: 380 VSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGV 439
Query: 390 TFVS 393
++
Sbjct: 440 LLLA 443
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 17/356 (4%)
Query: 53 LKPELLRAIVD----SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQI 108
LKP L I++ SGFE + VQ E IP DV+ A +G GKT F+L ++ I
Sbjct: 19 LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 78
Query: 109 ------DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLL 162
P P QV +++ TREL+ QI E F + LP++ + GG ++ + L
Sbjct: 79 RRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTL 138
Query: 163 RNECPHIVVGTPGRIL-ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
E ++++GTPGR+ + R + L +N+ ILDE D++L+ + +K V I P
Sbjct: 139 EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPK 197
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKL-TLHGLVQHYIXXXXXXXXXXXX 280
++ +FSAT ++ + + K +++ ME+ E+K T GL Y+
Sbjct: 198 QRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLV 257
Query: 281 XXXDALDFNQVVIFVKSVS----RAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKE 336
++V+F + + L K+ + H M Q+ R F E
Sbjct: 258 HLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTE 317
Query: 337 GHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
+ +L+ TD+ RG+DI ++ V+ YD P D ++HRVGR R +G AI F+
Sbjct: 318 ASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFL 373
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 179/370 (48%), Gaps = 18/370 (4%)
Query: 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQID-PVPGQV 115
+LR + + GF+ P+ +Q + IP + G + A +G GKT F+ L ++ P +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 116 SALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKV---HKDLLRNECPHIVVG 172
A++L RELA Q E ++ +K + F+ + K D + C +++
Sbjct: 212 RAVILSPARELAAQTAREGKKL------IKGSNFHIRLMTKPLVKTADFSKLWC-DVLIS 264
Query: 173 TPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM-MFSAT 231
TP R+ + K + L V + +LDE DK+ E + K + + K + + +FSAT
Sbjct: 265 TPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQ-SLLKQIDCVVKACSNPSIIRSLFSAT 323
Query: 232 LSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQ- 290
L + + + M D + + + + + + Q + A N
Sbjct: 324 LPDSVEELARSIMHDAVRVIIGRKNTAS-ETVKQKLVFAGSEEGKLLALRQSFAESLNPP 382
Query: 291 VVIFVKSVSRAAEL-DKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVG 349
V+IFV+S RA EL D+L E N + IHS + ER F+ G +L+ATD++
Sbjct: 383 VLIFVQSKERAKELYDELKCE-NIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIA 441
Query: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFE 409
RG+D + +N VINYD PDSA Y+HR+GR+GR G G AITF + DV L N+ +
Sbjct: 442 RGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYT-EQDVPFLRNIANTMM 500
Query: 410 VDIKQLPEQI 419
++P I
Sbjct: 501 SSGCEVPSWI 510
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 171/339 (50%), Gaps = 14/339 (4%)
Query: 60 AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQ-----QIDPVPGQ 114
AI + GF++ +++Q I + G DV+ A++G GKT F++ +++ + P G
Sbjct: 103 AIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNG- 161
Query: 115 VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTP 174
+V+C TRELA Q + E + V++ GG N + + + ++V+ TP
Sbjct: 162 TGVIVICPTRELAIQTKNVAEELLKHHSQT-VSMVIGGNNRRSEAQRIAS-GSNLVIATP 219
Query: 175 GRIL-ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLS 233
GR+L L K K+++ ++DE D++LE + +D+ I K+ P +Q +FSAT +
Sbjct: 220 GRLLDHLQNTKAFIYKHLKCLVIDEADRILEE-NFEEDMNKILKILPKTRQTALFSATQT 278
Query: 234 KEIRPICKKFMQDPMEIYVDD-EAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVV 292
+++ + + + P+ + VDD K+T GL Q Y + N+ +
Sbjct: 279 SKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKK-NLNKKI 337
Query: 293 IFVKSVSRAAELDKLLVECNFPSIC-IHSGMSQEERLKRYKGFKEGHTRILVATDLVGRG 351
+ S ++ + +++ + + IH GM Q R K + F + IL+ TD+ RG
Sbjct: 338 MVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARG 397
Query: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAI 389
+DI V+ +I YD PD Y+HRVGR R G KG A+
Sbjct: 398 LDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKAL 436
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 170/354 (48%), Gaps = 19/354 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQ- 106
F L ++I + GF +++Q + IP ++G DV+ A++G GKT F++ +++
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 107 ----QIDPVPGQVSALVLCHTRELA---YQICHEFERFSTYLPDLKVAVFYGGVNIKVHK 159
+ P G LV+C TRELA Y + E ++ + V GG K
Sbjct: 216 LYRVKFTPRNG-TGVLVICPTRELAIQSYGVAKELLKYHSQT----VGKVIGGEKRKTEA 270
Query: 160 DLLRNECPHIVVGTPGRILA-LTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKL 218
++L +++V TPGR+L L KN++ ++DE D++LE + +D++ I L
Sbjct: 271 EILAKGV-NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQ-NFEEDLKKILNL 328
Query: 219 TPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAK-LTLHGLVQHYIXXXXXXXXX 277
P +Q +FSAT S ++ + + + P+ I VD+ K +T GL Q Y
Sbjct: 329 LPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLL 388
Query: 278 XXXXXXDALDFNQVVIFVKSVSRAAELD-KLLVECNFPSICIHSGMSQEERLKRYKGFKE 336
+ ++ S ++ + +L F + I G+ Q +R + F +
Sbjct: 389 FLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIK 448
Query: 337 GHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAI 389
T IL+ T++ RG+D V+ ++ YD PD+ Y+HRVGR R G KG A+
Sbjct: 449 AETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKAL 502
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 174/373 (46%), Gaps = 47/373 (12%)
Query: 30 KVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ 89
KV+G+ + H +G L ++L + +E P +Q + +P + G D I
Sbjct: 385 KVHGKDVPRPIQFWHQTG-----LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGV 439
Query: 90 AKSGMGKTAVFVLSSLQQIDPVP------GQVSALVLCHTRELAYQICHEFERFSTYLPD 143
AK+G GKT FVL L+ I P G + LV+ TREL QI + +FS L
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI-GLVMAPTRELVQQIYSDIRKFSKALGI 498
Query: 144 LKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGR---ILALTRDKDLSLKNVRHFILDECD 200
+ V V YGG + L+ IVV TPGR IL + K +L+ V + ++DE D
Sbjct: 499 ICVPV-YGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAD 556
Query: 201 KMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTL 260
+M + + + I + D+Q ++FSAT +++ + +K + P+EI V + +
Sbjct: 557 RMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVN- 614
Query: 261 HGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHS 320
D Q+V R + L +LL E +
Sbjct: 615 -------------------------KDITQLVEIRPESERFSRLLELLGEWYEKGKVLVF 649
Query: 321 GMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380
SQE K FK +L+AT + RG+D++ + +V+N+D P+ + Y+HRVGR G
Sbjct: 650 VRSQE---KSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 706
Query: 381 RFGTKGLAITFVS 393
R G KG A+TF+S
Sbjct: 707 RAGRKGCAVTFIS 719
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 168/402 (41%), Gaps = 57/402 (14%)
Query: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSS 104
+ F + L LL ++ GF P++VQ +P I G D + Q+ +G GKT ++L
Sbjct: 109 AKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPI 168
Query: 105 LQQIDPVP-------------GQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYG 151
L +I P+ ++ A+++ +REL QI E E+ + V G
Sbjct: 169 LSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVG 228
Query: 152 GVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKD 211
G N ++ L+ P IVVGTPGRI +++ L R +LDE D++L S + R+D
Sbjct: 229 GANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELL-SFNFRED 287
Query: 212 VQDIFKLTPH--------------DKQVMMFSATLSKEIRPICKKFMQDPMEIY------ 251
+ I + ++Q ++ SAT+ + K + +P+ +
Sbjct: 288 IHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTP 347
Query: 252 -------------------VDDEAKLTLH----GLVQHYIXXXXXXXXXXXXXXXDALDF 288
D + + T+ L +Y ALD
Sbjct: 348 LDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDA 407
Query: 289 NQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLV 348
V+ F+ + ++ L S +H + + R K FK G ++LV +L
Sbjct: 408 QSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467
Query: 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
RG+D+ ++V+N ++P A Y HR GR GR G KG +T
Sbjct: 468 ARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVT 509
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 169/364 (46%), Gaps = 28/364 (7%)
Query: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQ------ 106
L +++ A+ S FE + VQ IP DV A +G GKT FV+ ++
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 107 QIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNEC 166
P P QV +++ TREL+ QI + + F + L ++ + GG +K ++ E
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 167 PHIVVGTPGRIL-ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQV 225
++++GTPGR+ + R + L +N+ ILDE D++LE + ++ V I P ++
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLE-MGFQRQVNYIISRLPKQRRT 201
Query: 226 MMFSATLSKEIRPICKKFMQDPMEIYVDDEAKL----------TLHGLVQHYIXXXXXXX 275
+FSAT ++ + + K +++P+ + V ++K T GL Y+
Sbjct: 202 GLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKK 261
Query: 276 XXXXXXXXDALDFNQVVIFVKSVSRAAELDKL-LVECNFPS------ICIHSGMSQEERL 328
++++F + A +D LV P+ I IH M Q R
Sbjct: 262 SSQLVDLLIKNSDKKLIVFFMT---CASVDYWGLVLSKIPALKSISLIPIHGDMKQNARD 318
Query: 329 KRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 388
K F + + L+ TD+ RG+DI ++ V+ YD P + + HR GR R G +G A
Sbjct: 319 KALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRA 378
Query: 389 ITFV 392
I F+
Sbjct: 379 IVFL 382
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 174/363 (47%), Gaps = 28/363 (7%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL----- 102
F L P+LL + +G++ P+ +Q + IP A+ G ++ A +G GKTA F++
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR 171
Query: 103 --------SSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVN 154
S Q+ +P+ A+VL TREL Q+ + + LP K A+ GG
Sbjct: 172 CTTYHSEHPSDQRRNPL-----AMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGG-- 223
Query: 155 IKVHKDLLR-NECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQ 213
+ L R + +++GTPGR++ L + L N+ F+LDE D ML+ R V
Sbjct: 224 DPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR-GFRDQVM 282
Query: 214 DIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXX 273
IF+ QV++FSAT+S+E+ + ++ + + + + K + Q I
Sbjct: 283 QIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPN-KAVNQLAIWVDAK 340
Query: 274 XXXXXXXXXXDALDFNQ--VVIFVKSVSRAAEL-DKLLVECNFPSICIHSGMSQEERLKR 330
+ + + V++V S A L + + V ++ IH +ER
Sbjct: 341 QKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDV 400
Query: 331 YKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
F G +LV+T ++GRG+D+ V VI +DMP + Y+H +GRA R G KG AI
Sbjct: 401 MGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIV 460
Query: 391 FVS 393
FV+
Sbjct: 461 FVN 463
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 174/363 (47%), Gaps = 28/363 (7%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL----- 102
F L P+LL + +G++ P+ +Q + IP A+ G ++ A +G GKTA F++
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR 171
Query: 103 --------SSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVN 154
S Q+ +P+ A+VL TREL Q+ + + LP K A+ GG
Sbjct: 172 CTTYHSEHPSDQRRNPL-----AMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGG-- 223
Query: 155 IKVHKDLLR-NECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQ 213
+ L R + +++GTPGR++ L + L N+ F+LDE D ML+ R V
Sbjct: 224 DPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR-GFRDQVM 282
Query: 214 DIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXX 273
IF+ QV++FSAT+S+E+ + ++ + + + + K + Q I
Sbjct: 283 QIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPN-KAVNQLAIWVDAK 340
Query: 274 XXXXXXXXXXDALDFNQ--VVIFVKSVSRAAEL-DKLLVECNFPSICIHSGMSQEERLKR 330
+ + + V++V S A L + + V ++ IH +ER
Sbjct: 341 QKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDV 400
Query: 331 YKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390
F G +LV+T ++GRG+D+ V VI +DMP + Y+H +GRA R G KG AI
Sbjct: 401 MGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIV 460
Query: 391 FVS 393
FV+
Sbjct: 461 FVN 463
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 15/314 (4%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F+D +L AI GF P+ +Q + P A+ G D+I A++G GKT ++L +L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 108 IDPVP--GQVSA---LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH-KDL 161
+ P GQ L+L TRELA QI E +F ++ YGG +DL
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRS-GVRSTCIYGGAPKGPQIRDL 285
Query: 162 LRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPH 221
R IV+ TPGR++ + + +LK V + +LDE D+ML+ + ++ I
Sbjct: 286 RRGV--EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVSQIRP 342
Query: 222 DKQVMMFSATLSKEIRPICKKFMQDPMEIYV---DDEAKLTLHGLVQHYIXXXXXXXXXX 278
D+Q +++SAT +E+ + ++F++DP + + D +A +++ +++ I
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIE--IVPTPEKYNRL 400
Query: 279 XXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+D ++++IFV++ ++ + L +P++ IH +Q ER + FK G
Sbjct: 401 LTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460
Query: 339 TRILVATDLVGRGI 352
+ I+ ATD+ RG+
Sbjct: 461 SPIMTATDVAARGL 474
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 175/365 (47%), Gaps = 21/365 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSS--- 104
F + + P L+A+ SG + VQ + + + G D + +AK+G GK+ F+L +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 105 -LQQIDPVPG-----QVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH 158
L+ ++ G + AL+LC TRELA QI E + + + V GG K+
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLD 449
Query: 159 KDLLRNECPHIVVGTPGRILALTRDKD---LSLKNVRHFILDECDKMLESLDMRKDVQDI 215
+ L +E I++ TPGR+L +K L ++ FI+DE D +L+ L R+DV+ I
Sbjct: 450 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD-LGFRRDVEKI 508
Query: 216 FKLTPHDKQVMMFSATLSKEIRPICKKFMQ------DPMEIY-VDDEAKLTLHGLVQHYI 268
P +Q ++FSAT+ KE+R + + ++ D + + V+ K+ +V +
Sbjct: 509 IDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHE 568
Query: 269 XXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERL 328
+ D+ ++++F + + + LL E IH+ Q R
Sbjct: 569 SHFHLVPHLLKEHINNTPDY-KIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRT 627
Query: 329 KRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 388
+ FKE + ILV +D+ RG++ V +VI +P + Y+HR+GR GR G G
Sbjct: 628 RVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEG 687
Query: 389 ITFVS 393
+ ++
Sbjct: 688 LLLIA 692
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 165/356 (46%), Gaps = 22/356 (6%)
Query: 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDP 110
F + L + +G E +Q + G D++ +A++G GKT FVL L+ +
Sbjct: 101 FRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVN 160
Query: 111 VPGQV----------SALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKD 160
P + S LVL TRELA Q+ +F+ + L L YGG + V +
Sbjct: 161 GPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEG 219
Query: 161 LLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIF-KLT 219
L+ IVVGTPGRI ++L ++ +LDE D+ML + +DV+ I K+
Sbjct: 220 KLKRGV-DIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLR-MGFVEDVELILGKVE 277
Query: 220 PHDK-QVMMFSATLSKEIRPICKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXX 277
K Q ++FSATL ++ I +F++ D I + K+ V+H
Sbjct: 278 DSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMA 337
Query: 278 XXXXXXDAL--DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFK 335
+ Q +IF ++ + +EL LL S +H + Q +R GF+
Sbjct: 338 RLIPDIISCYSSGGQTIIFAETKVQVSELSGLL----DGSRALHGEIPQSQREVTLAGFR 393
Query: 336 EGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391
G LVAT++ RG+DI V ++I + P + Y+HR GR GR G G+A+T
Sbjct: 394 NGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 186/383 (48%), Gaps = 30/383 (7%)
Query: 34 EATKKGYVGIHSSGFRDFLLKP---ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
E K G V +G R F P + R + D+ + ++VQ IP A+ G D++ A
Sbjct: 56 EDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAA 115
Query: 91 KSGMGKTAVFVLSSLQQI-----DPVPGQVSALVLCHTRELAYQI------CHEFERFST 139
++G GKT FV+ L+++ P G V +++ TRELA Q +F +FS
Sbjct: 116 RTGSGKTLAFVIPILEKLHRERWSPEDG-VGCIIISPTRELAAQTFGVLNKVGKFHKFSA 174
Query: 140 YLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILA-LTRDKDLSLKNVRHFILDE 198
L + G + V K+ R +I+V PGR+L + + ++ ILDE
Sbjct: 175 GL------LIGGREGVDVEKE--RVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDE 226
Query: 199 CDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEA-K 257
D++L+S + + I P +Q ++FSAT +K+++ + + ++DP I V EA
Sbjct: 227 ADRVLDSA-FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVT 285
Query: 258 LTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLL--VECNFPS 315
T L+Q + +++++F+ + + + + + P
Sbjct: 286 ATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPL 345
Query: 316 ICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIER-VNIVINYDMPDSADTYLH 374
+H MSQE+R+ Y F E + +L TD++ RG+D ++ V+ V+ D P+ +Y+H
Sbjct: 346 KSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIH 404
Query: 375 RVGRAGRFGTKGLAITFVSCSAD 397
RVGR RF T+G ++ F++ S +
Sbjct: 405 RVGRTARFYTQGKSLLFLTPSEE 427
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 183/455 (40%), Gaps = 79/455 (17%)
Query: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIP-QAILGMDVICQAKSGMGKTAVFVLSS 104
S + L P L+++I F+ P+++Q C A G DVI A++G GKT F L
Sbjct: 190 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 249
Query: 105 LQ--------------------QIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDL 144
LQ Q G + AL++ TRELA Q+ E + L +
Sbjct: 250 LQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNL-SV 308
Query: 145 KVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKD---LSLKNVRHFILDECDK 201
KV GG+ + + L+ E P IVV TPGR+ L + + L ++ F+LDE D+
Sbjct: 309 KVVPIVGGMFSEKQERRLK-EKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADR 367
Query: 202 MLESLDMRKDVQDIFKLTP------------------------HDKQVMMFSAT--LSKE 235
M+E R ++Q I L P +Q +FSAT LS +
Sbjct: 368 MVERGHFR-ELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSD 426
Query: 236 IRPICKK-----------------------FMQDPMEIYVDDEAKLTLHGLVQHYIXXXX 272
R K+ M+D + I + + + +I
Sbjct: 427 FRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEE 486
Query: 273 XXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYK 332
+ ++F SV+ + LL + S M Q RLK
Sbjct: 487 KEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSID 546
Query: 333 GFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
F+ IL+ATDLV RGIDI+ V +I+Y +P SA+ Y+HR GR R G +I +
Sbjct: 547 RFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALI 606
Query: 393 SCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
+ +S +K P +D S YMP+
Sbjct: 607 EPNETSKFYTLCKSFSMESVKIFP--LDNS-YMPA 638
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 21/365 (5%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSS--- 104
F + + P L+A+ SG + VQ + + + G D + +AK+G GK+ F+L +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 105 -LQQIDPVPG-----QVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH 158
L+ ++ G + L+LC TRELA QI E + + V GG ++
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 159 KDLLRNECPHIVVGTPGRILALTRDKD---LSLKNVRHFILDECDKMLESLDMRKDVQDI 215
+ L +E I++ TPGR+L +K L ++ FI+DE D +L+ L ++DV+ I
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD-LGFKRDVEKI 555
Query: 216 FKLTPHDKQVMMFSATLSKEIRPICKKFMQ------DPMEIY-VDDEAKLTLHGLVQHYI 268
P +Q ++FSAT+ KE+R + + ++ D + + V+ K+ +V +
Sbjct: 556 IDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHE 615
Query: 269 XXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERL 328
+ D+ ++++F + + + LL E IH+ Q R
Sbjct: 616 SHFHLVPHLLKEHINNMPDY-KIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRT 674
Query: 329 KRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 388
FKE + ILV +D+ RG++ V +VI +P + Y+HR+GR GR G G
Sbjct: 675 CVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKG 734
Query: 389 ITFVS 393
+ ++
Sbjct: 735 LLLIA 739
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 28/336 (8%)
Query: 75 ECIPQAILGMDVICQAKSGMGKTAVFVLS-------------SLQQIDPVPGQVSALVLC 121
+ IP A+ G ++ A +G GKTA F++ S Q+ +P+ A+VL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL-----AMVLA 56
Query: 122 HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLR-NECPHIVVGTPGRILAL 180
TREL Q+ + + LP K A+ GG + L R + +++GTPGR++ L
Sbjct: 57 PTRELCVQVEDQAKMLGKGLP-FKTALVVGG--DPMSGQLYRIQQGVELIIGTPGRVVDL 113
Query: 181 TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPIC 240
+ L N+ F+LDE D ML+ R V IF+ QV++FSAT+S+E+ +
Sbjct: 114 LSKHTIELDNIMTFVLDEVDCMLQR-GFRDQVMQIFQALSQ-PQVLLFSATISREVEKVG 171
Query: 241 KKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFNQ--VVIFVKSV 298
++ + + + + K + Q I + + + V++V S
Sbjct: 172 GSLAKEIILVSIGNPNKPN-KAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSR 230
Query: 299 SRAAEL-DKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERV 357
A L + + V ++ IH +ER F G +LV+T ++GRG+D+ V
Sbjct: 231 VGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVV 290
Query: 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
VI +DMP + Y+H +GRA R G KG AI FV+
Sbjct: 291 RQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 326
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 171/424 (40%), Gaps = 90/424 (21%)
Query: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVS------AL 118
GFE P+ VQ + IP + G DV+ A +G GKT ++ + + +V AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 119 VLCHTRELAYQICHEFE----RFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTP 174
V+ TREL Q+ E RF +P GG K LR I++ TP
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVP----GYVMGGEKKAKEKARLRKGI-SILIATP 163
Query: 175 GRIL-ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKL--------------T 219
GR+L L KN+R I DE D +LE L K+++ I KL
Sbjct: 164 GRLLDHLKNTASFVHKNLRWVIFDEADSILE-LGYGKEIEQIIKLLGSGQNEQGEEDDIV 222
Query: 220 PH--DKQVMMFSATLSKEIRPICKKFMQDPMEIYVD------------------DEAKLT 259
P KQ ++ SATL+ ++ + K + DP+ I +D D +
Sbjct: 223 PKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMV 282
Query: 260 LH----------------GLVQHYIXXXXXXXXXXXXXXXDAL---DFNQVVIFVKSVSR 300
+H LVQ Y+ L + +Q V+ S
Sbjct: 283 IHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRD 342
Query: 301 AAELD-KLLVECNFP------------------SICIHSGMSQEERLKRYKGFKEGHTRI 341
A + LL E +P + +H M QE+R + FK +
Sbjct: 343 AVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAV 402
Query: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVL 401
L++TD+ RG+D +V +I YD P A Y+HRVGR R G KG A+ F+ ++D L
Sbjct: 403 LLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQ-PIEIDYL 461
Query: 402 NNVQ 405
++
Sbjct: 462 KELK 465
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 171/371 (46%), Gaps = 33/371 (8%)
Query: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQ 107
F++ L E++ A+ + E P+E+Q IP + V+ + +G GKT ++L +Q
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 108 I---------DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVH 158
+ P + +VLC TREL+ Q+ + S + + + GG I+
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIRPQ 232
Query: 159 KDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLE---SLDMRKDV--- 212
+D L N +VVGTPGRIL + ++ ++ + +LDE D M + ++RK +
Sbjct: 233 EDSLNNAI-DMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 291
Query: 213 -QDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQH----Y 267
Q K Q ++ +AT++ ++ + + Q + TLH + + +
Sbjct: 292 NQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTS-----TLHKKIANARHDF 346
Query: 268 IXXXX---XXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQ 324
I ++V++F +++ + +D L E ++ H +
Sbjct: 347 IKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPA 406
Query: 325 EERLKRYKGFK--EGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
E+R++ K FK EG LV TDL RG+D++ V+ V+ +D P ++ YLHR GR R
Sbjct: 407 EQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARM 465
Query: 383 GTKGLAITFVS 393
G KG + VS
Sbjct: 466 GAKGKVTSLVS 476
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 166/387 (42%), Gaps = 56/387 (14%)
Query: 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQ 106
F + L L+RA+ G E P+ +Q IP + G DV+ +AK+G GKT ++L LQ
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 107 QI---DPVPGQ---VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKD 160
++ D V + SA +L +REL Q+ + S+ + +V + + +
Sbjct: 107 KLFSADSVSKKKLAPSAFILVPSRELCQQV---YTEVSSLIELCRVQLKAVQLTSSMSAS 163
Query: 161 LLRNE---CPHIVVGTPGRI----LALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQ 213
+RN P I+V TP I A + +++ +LDE D +L S +++
Sbjct: 164 DMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLL-SYGYEDNLR 222
Query: 214 DIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYV--DDEAKLTLHGLVQHYIXXX 271
+ + P Q ++ SAT S ++ + K + +P+ + + D++ + + VQ +
Sbjct: 223 SVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISC 282
Query: 272 XXXXXXXXXXXXDALDFNQ--VVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLK 329
L+ Q ++IF+ ++ L L + S ++ + Q RL
Sbjct: 283 SAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLH 342
Query: 330 RYKGFKEGHTRILVATD-----------------------------------LVGRGIDI 354
+ F G L+ATD V RGID
Sbjct: 343 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDF 402
Query: 355 ERVNIVINYDMPDSADTYLHRVGRAGR 381
++V+ VIN+DMP S Y+HR+GR GR
Sbjct: 403 KKVHTVINFDMPQSVTGYIHRIGRTGR 429
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 172/407 (42%), Gaps = 67/407 (16%)
Query: 53 LKPELLRAIVDSGFEHPSEVQ----HECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQI 108
L P+L +A+ + G VQ HE I D+ + +G GKT + L +Q +
Sbjct: 38 LNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 97
Query: 109 DPVPGQ-VSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNI--------KVHK 159
P + + ALV+ TR+LA Q+ F+ + + L V G +I K K
Sbjct: 98 ASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAV-GLSVGSAVGQSSIAGEISQLIKTPK 156
Query: 160 ----------DLLRN--ECPHIVVGTPGRIL-ALTRDKDLSLKNVRHFILDECDKMLE-- 204
DL +N I+V TPGR++ + K +L+++R+ ++DE D++L
Sbjct: 157 LDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREA 216
Query: 205 --------------------------------SLDM--RKDVQDIFKLTPHDKQV-MMFS 229
SL R+ V+ FK P+ + V M+ S
Sbjct: 217 YQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLS 276
Query: 230 ATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXXXXXXXDALDFN 289
ATL+++ + + + P+ + L + + +
Sbjct: 277 ATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGE 336
Query: 290 QVVIFVKSVSRAAELDKLLVECNFPSICIH---SGMSQEERLKRYKGFKEGHTRILVATD 346
+ +IF SV L KLL P I G++Q R K K F++G ++LVA+D
Sbjct: 337 KCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASD 396
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393
+ RG+D++ V VINYDMP A T++HR GR R G G T +S
Sbjct: 397 ALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLS 443
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 34/356 (9%)
Query: 55 PE-LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPG 113
PE +L + + GF P+++Q E +P G D I A++G GKT ++L I+P
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 114 QVSALVLCHTRELAYQICHEFERFSTYLP-DLK---VAVFYGGVNIKVHKDLLRNECPHI 169
V A+++ TREL Q+ + D+K V G ++ HK L+ E P I
Sbjct: 144 SVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAI 203
Query: 170 VVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIF-KLTPHDKQVMMF 228
+V T + + + +VR ++DE D + S V+ + + DK+ +F
Sbjct: 204 LVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVF 263
Query: 229 -SATLSKEIRPICKKFMQDPME--------IYVDDEAKLTLH-GLVQHYIXXXXXXXXXX 278
SA++ P K F+ D ++ ++V A + + L+ ++
Sbjct: 264 ASASI-----PQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQV 318
Query: 279 XXXXXDALDFNQVVIFV-------------KSVSRAAELDKLLVECNFPSICIHSGMSQE 325
++ +IFV S + E K + + + + M+
Sbjct: 319 LLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFN 378
Query: 326 ERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
R ++G +LV+TD+ RGID+ + N+D+P + YLHR GRAGR
Sbjct: 379 SRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 47/374 (12%)
Query: 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQI------- 108
++++A+ + F+ P+ +Q I G I +SG GKT +++ +Q++
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 109 --DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNEC 166
PG +VL T ELA Q+ S + V GG + + L +
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENL-EQG 502
Query: 167 PHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVM 226
+++ TPGR L + L L N+R ILDE D + + +Q++ +P Q +
Sbjct: 503 VDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYL 562
Query: 227 MFSATLSKEIR-------PICKKFM-------QDPMEIYV-----DDEAKLTLHGLVQHY 267
+ATL EI P C+ M + +E ++ DD A+ T Q+
Sbjct: 563 FVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQN- 621
Query: 268 IXXXXXXXXXXXXXXXDALDFNQVVIFVKSVSRAAELDKLL-----VECNFPSICIHSGM 322
+ ++ +IF + +++ + E + H+ +
Sbjct: 622 -------KKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAAL 674
Query: 323 SQEERLKRYKGFK----EGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
SQE RL + F E ++ LV TD RGID V+ V+ +D P Y+ RVGR
Sbjct: 675 SQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGR 734
Query: 379 AGRFGTKGLAITFV 392
R G +G F+
Sbjct: 735 TAR-GARGKGKAFI 747
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 41/316 (12%)
Query: 53 LKPELLRAIVD----SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQI 108
LKP L I++ SGFE + VQ E IP DV+ A +G GKT F+L ++ I
Sbjct: 20 LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 79
Query: 109 ------DPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAV---FYGGVNIKVHK 159
P P QV +++ TREL+ QI H+ R AV F ++
Sbjct: 80 RRSNSYPPKPHQVMGVIISPTRELSAQI-HKVAR----------AVRLDFAKCREVEADM 128
Query: 160 DLLRNECPHIVVGTPGRIL-ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKL 218
+ L E ++++GTPGR+ + R + L +N+ ILDE D++L+ + +K V I
Sbjct: 129 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISR 187
Query: 219 TPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIXXXXXXXXXX 278
P ++ +FSAT ++ + + K +++P Y+ EA LV H +
Sbjct: 188 LPKQRRTGLFSATQTQAVADLAKAGLRNP---YLKCEADQKSSQLV-HLLIENKNKKLVV 243
Query: 279 XXXXXDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH 338
+D+ +VI +++ L FP+ H M Q+ R F E
Sbjct: 244 FFMTCACVDYWGLVI--------SKIPSLKSISFFPT---HGKMDQKGRDTALASFTEAS 292
Query: 339 TRILVATDLVGRGIDI 354
+ +L+ TD+ RG+DI
Sbjct: 293 SGVLLCTDVAARGLDI 308
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 29/260 (11%)
Query: 146 VAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLES 205
V G ++ HK L+ E P I+V T + + + +VR ++DE D + S
Sbjct: 23 VMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYS 82
Query: 206 LDMRKDVQDIF-KLTPHDKQVMMF-SATLSKEIRPICKKFMQDPMEIYVDDEAKLTLH-- 261
V+ + + DK+ +F SA++ P K F+ D ++ + +H
Sbjct: 83 SKQVGSVRKLLTSFSSCDKRQTVFASASI-----PQHKHFVHDCIQQKWTKRDVVHVHVS 137
Query: 262 -------GLVQHYIXXXXXXXXXXXXXXXDALDFNQVVIFV-------------KSVSRA 301
L+ ++ ++ +IFV S +
Sbjct: 138 AIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLL 197
Query: 302 AELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVI 361
E K + + + + M+ R ++G +LV+TD+ RGID+ +
Sbjct: 198 MEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIF 257
Query: 362 NYDMPDSADTYLHRVGRAGR 381
N+D+P + YLHR GRAGR
Sbjct: 258 NFDLPQTVTDYLHRAGRAGR 277
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 28 GTKVNGEATKKG---YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM 84
+ E KKG + H+ ++ L + A+ DSGF+ PS Q CIP + G
Sbjct: 59 ASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGK 118
Query: 85 DVICQAKSGMGKTAVFVLSSLQQID--------------PVPGQVSALVLCHTRELAYQI 130
DVI A++G GKT ++ + Q+ P P + +L+LC +
Sbjct: 119 DVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPN----VML 174
Query: 131 CHEFERFSTYL------PDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRIL---ALT 181
C + R L P L+V G + P I+V TP +L
Sbjct: 175 CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP-------DRLPDIIVSTPAALLNNIEPK 227
Query: 182 RDKDLS-LKNVRHFILDECDKML 203
R++ L L+ V++ + DE D +L
Sbjct: 228 RNRRLEFLRCVKYVVFDEADMLL 250
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 290 QVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVG 349
+ ++F +V + +L + + H +ER F+E + V TD
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRETGG-VFVCTDAAA 484
Query: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQ 405
RG+D+ V+ VI D SA +LHR+GR R G G +T + A+ D++ ++
Sbjct: 485 RGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYG-TVTSLYTEANRDLVEAIR 539
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATD 346
+ ++++ K + K L + N + HSG+ ++R++ + F R++VAT
Sbjct: 485 EIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATV 544
Query: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
G G+D V VI++ +P S + Y+ +GRAGR G
Sbjct: 545 AFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDG 581
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 292 VIFVKSVSRAAELDKLLVE-CNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGR 350
+++ S S ++ K L E C ++ H+G+ ++R+ + ++ G RI+ AT G
Sbjct: 431 IVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGM 490
Query: 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 389
GID V VI+ + + ++Y GRAGR G + I
Sbjct: 491 GIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCI 529
>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079
FORWARD LENGTH=1910
Length = 1910
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSIC-------IHSGMSQEERLKRYKG----FK 335
DF + ++FV+ V A L K+ E PS+ I SQE + + + F+
Sbjct: 664 DF-RAIVFVERVVAALVLPKVFAE--LPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFR 720
Query: 336 EGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCS 395
+GH +LVAT + G+DI + N+V+ +D+ + Y+ GRA + G+ + +
Sbjct: 721 DGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNV 780
Query: 396 ADVDVLNNVQSRFEVDIKQLPEQIDTS 422
+ L N ++ E K+ E+ D S
Sbjct: 781 SHAAFLRNARNSEETLRKEAIERTDLS 807
>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1909
Length = 1909
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 287 DFNQVVIFVKSVSRAAELDKLLVECNFPSIC-------IHSGMSQEERLKRYKG----FK 335
DF + ++FV+ V A L K+ E PS+ I SQE + + + F+
Sbjct: 664 DF-RAIVFVERVVAALVLPKVFAE--LPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFR 720
Query: 336 EGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCS 395
+GH +LVAT + G+DI + N+V+ +D+ + Y+ GRA + G+ + +
Sbjct: 721 DGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNV 780
Query: 396 ADVDVLNNVQSRFEVDIKQLPEQIDTS 422
+ L N ++ E K+ E+ D S
Sbjct: 781 SHAAFLRNARNSEETLRKEAIERTDLS 807