Miyakogusa Predicted Gene
- Lj1g3v1788430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1788430.1 tr|G7J946|G7J946_MEDTR Endoribonuclease
Dicer-like protein OS=Medicago truncatula GN=MTR_3g105390
PE,70.4,0,HELICASE-RELATED,NULL; HELICASE_ATP_BIND_1,Helicase,
superfamily 1/2, ATP-binding domain; DEAD-like ,CUFF.27955.1
(1668 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 1306 0.0
AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 1301 0.0
AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 1233 0.0
AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:685957... 617 e-176
AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-686906... 590 e-168
AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ... 586 e-167
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020... 586 e-167
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ... 543 e-154
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60... 404 e-112
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO... 400 e-111
AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2... 121 5e-27
AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:... 114 8e-25
AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:882... 100 2e-20
AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 68 6e-11
AT1G35530.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 66 2e-10
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 55 3e-07
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 1e-06
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 1e-06
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 1e-06
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 53 2e-06
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 53 2e-06
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 53 2e-06
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 53 2e-06
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 53 2e-06
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 53 2e-06
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 53 2e-06
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 53 2e-06
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 53 2e-06
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 53 2e-06
>AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1580
Length = 1580
Score = 1306 bits (3381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1658 (44%), Positives = 1011/1658 (60%), Gaps = 117/1658 (7%)
Query: 10 NPLKRTFDQLYTKPQDDDSPTFINIDPR-RYQNEVFQVARKRNTIAVLDTGTGKTLIAIM 68
N LKR F ++ D + + D Y+ +V++VA+ RN IAVL TG K+ I
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGSYELKVYEVAKNRNIIAVLGTGIDKSEITKR 76
Query: 69 LIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTW 127
LIK + S K+LII LAP V+LV Q +++ +VEEY+G +GVD+W + W
Sbjct: 77 LIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYFGAKGVDKWTSQRW 133
Query: 128 EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRAN 187
++E S++DVLVMTPQILL+ L AFLK+EM+ L++IDECH+ TGNHPYA++MKEFYH +
Sbjct: 134 DEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFYHEST 193
Query: 188 EKPMIFGMTASPVVKKG-NSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESC 246
KP IFG+TAS V++KG SS + Q+SELE ++DS+ + E+R ++ + KE
Sbjct: 194 SKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFATTVKEGP 253
Query: 247 RFYDQARFPALSLKPKIEALWLKSDALLSEFQSNYKD----VDSKFKTLHQRMSNDLAKV 302
Y+ + +L LK K+E LK DA L Q KD +D+KF+T +R+S D ++
Sbjct: 254 ILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREI 313
Query: 303 LYCLEDLGLLCAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESLNLADK 362
L+CL++LGL+CA+ A ++C K S + E E Y++ C LED++ I L DK
Sbjct: 314 LHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDK 373
Query: 363 MILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNV 422
++D++ ++ +AV G++SPKL EL + +F + CLI VERII AKVI+RFVK
Sbjct: 374 SLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERIITAKVIERFVKKE 433
Query: 423 PQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVI 482
+++L V YLT N+ S + A Q EI D F+ GKVNLLF TDV+EEG VP+CSC++
Sbjct: 434 ASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMV 493
Query: 483 RFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVHE 542
FDLPKT+ SY QS+ ++Q+NS+ I+ LERGN KQR+ +++R E + D
Sbjct: 494 CFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQDP-----EA 548
Query: 543 SNLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGCY 602
NL++ N + V G+ V S++++ +
Sbjct: 549 PNLKSCPPPVKNGHGVKEIGSMVIPDSNITVSEEA------------------------- 583
Query: 603 KCKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHH 662
A+ QT+ P + +L CKKL L+++L+ + A
Sbjct: 584 ---------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNNLLQSNGKEKVASS 623
Query: 663 IVKNKESSSGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFVL 722
K+ S++G+ KRKELHGT AL G WG +GA F AYKF+F CNI E+YS F L
Sbjct: 624 KSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFDFCCNISGEVYSSFSL 683
Query: 723 LIESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLV 782
L+ES L +DVG +E+DLYLV K+VKASVS CG++ L E+++KAK F +FFFNG+FG+L
Sbjct: 684 LLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAKYFQQFFFNGMFGKLF 743
Query: 783 SRSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVSAVEF 842
S S +R FLLQ DT SLW P ++ LLP+E ++ S I WS I+SC S VEF
Sbjct: 744 VGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE--TNDLASSATIDWSAINSCASIVEF 801
Query: 843 LRQKFSSVAGDCDNGSKVSSPCDTNSSN-------AESTNKIHFANCVLDLNDLREIVVL 895
L++ D D C+T+S E TN IHFAN D N L E+VV+
Sbjct: 802 LKKNSLLDLRDSDGNQ-----CNTSSGQEVLLDDKMEETNLIHFANASSDKNSLEELVVI 856
Query: 896 AIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQ 955
AIHTG++Y I+EAV D SA SPF+ D S+ T++ YF K+YGI L HP QPL++LKQ
Sbjct: 857 AIHTGRIYSIVEAVSDSSAMSPFEV--DASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQ 914
Query: 956 SHNSHNLLFNFHEKDVGGKSSQTGP-GASKXXXXXXXXXELLYIIDVKRDVLKSMYLLPS 1014
SH++HNLL +F+E+ V + G K ELL IDV R VLKS+YLLPS
Sbjct: 915 SHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVLKSIYLLPS 974
Query: 1015 LMHRIETLLLSSQLREEINDXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKY 1074
+MHR+E+L+L+SQLREEI+ TT C E+FSMERLELLGDSVLKY
Sbjct: 975 VMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKY 1034
Query: 1075 VVSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQH 1134
V SCHLFLKYP+ EG+L+ +RQ +I N+ LH+L T+RKLQGYI + AFEPRRW APGQ
Sbjct: 1035 VASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAPGQF 1094
Query: 1135 SIYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFA 1194
S++PVPC CG++T EVP+D KF +E+ + +GKSCD GHRW+ SK+++DC E+LIGAY+
Sbjct: 1095 SLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGAYYV 1154
Query: 1195 GGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGL 1254
GGL ASLH MKWLGID + +P+LV +AI SL Y+PK +E+ LE K+ +EFS K L
Sbjct: 1155 SGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFL 1214
Query: 1255 LLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNN 1314
L EAITH S L YERLEFLGDSVLD LIT HL+ ++ GE+T+LRSA VNN
Sbjct: 1215 LKEAITHSS---LRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1271
Query: 1315 ENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLLLLGIKAPKALGDLVESI 1374
ENFAQVAV+ N QI++Y + + + I+ PKALGD+VESI
Sbjct: 1272 ENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESI 1331
Query: 1375 AGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNK 1434
AGA+LIDT+L LD+VW+ F PLLSP+VTPD L+L P R+L+ LCDSLGYF ++K D
Sbjct: 1332 AGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGV 1391
Query: 1435 ESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDNH 1494
++ ++L QL + LL G ++A +AA HLL LEK +S + + DN
Sbjct: 1392 KAQATIQL--QLDDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNISRKTSLG----DNQ 1445
Query: 1495 IHIHDSSYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSSSEASDVIAST 1554
+ D +++ HS D LT+ ++E ++
Sbjct: 1446 SSM--------DVNLACNHS----------DRETLTS-----------ETTEIQSIV--I 1474
Query: 1555 PVISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCEALEGSKGQNCFVST 1614
P I +MKKG PR L+E CKK WP+P+FD +E K R+ F + E + F ST
Sbjct: 1475 PFIGPINMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTST 1534
Query: 1615 ITMIMPNEGTIECRGEARSDKKSSYDSAAVKMLHELQR 1652
IT+ +PN + GEAR DKKSS+DSA V++L+EL+R
Sbjct: 1535 ITLRIPNREAVMYAGEARPDKKSSFDSAVVELLYELER 1572
>AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1570
Length = 1570
Score = 1301 bits (3368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/1657 (44%), Positives = 1007/1657 (60%), Gaps = 125/1657 (7%)
Query: 10 NPLKRTFDQLYTKPQDDDSPTFINIDPR-RYQNEVFQVARKRNTIAVLDTGTGKTLIAIM 68
N LKR F ++ D + + D Y+ +V++VA+ RN IAVL TG K+ I
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGSYELKVYEVAKNRNIIAVLGTGIDKSEITKR 76
Query: 69 LIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTW 127
LIK + S K+LII LAP V+LV Q +++ +VEEY+G +GVD+W + W
Sbjct: 77 LIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYFGAKGVDKWTSQRW 133
Query: 128 EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRAN 187
++E S++DVLVMTPQILL+ L AFLK+EM+ L++IDECH+ TGNHPYA++MKEFYH +
Sbjct: 134 DEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKEFYHEST 193
Query: 188 EKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESCR 247
KP IFG+TAS V++K Q+SELE ++DS+ + E+R ++ + KE
Sbjct: 194 SKPKIFGLTASAVIRKA---------QVSELERLMDSKIFNPEEREGVEKFATTVKEGPI 244
Query: 248 FYDQARFPALSLKPKIEALWLKSDALLSEFQSNYKD----VDSKFKTLHQRMSNDLAKVL 303
Y+ + +L LK K+E LK DA L Q KD +D+KF+T +R+S D ++L
Sbjct: 245 LYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREIL 304
Query: 304 YCLEDLGLLCAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESLNLADKM 363
+CL++LGL+CA+ A ++C K S + E E Y++ C LED++ I L DK
Sbjct: 305 HCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDKS 364
Query: 364 ILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNVP 423
++D++ ++ +AV G++SPKL EL + +F + CLI VERII AKVI+RFVK
Sbjct: 365 LVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERIITAKVIERFVKKEA 424
Query: 424 QISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIR 483
+++L V YLT N+ S + A Q EI D F+ GKVNLLF TDV+EEG VP+CSC++
Sbjct: 425 SLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVC 484
Query: 484 FDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVHES 543
FDLPKT+ SY QS+ ++Q+NS+ I+ LERGN KQR+ +++R E + D
Sbjct: 485 FDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQDP-----EAP 539
Query: 544 NLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGCYK 603
NL++ N + V G+ V S++++ +
Sbjct: 540 NLKSCPPPVKNGHGVKEIGSMVIPDSNITVSEEA-------------------------- 573
Query: 604 CKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHI 663
A+ QT+ P + +L CKKL L+++L+ + A
Sbjct: 574 --------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNNLLQSNGKEKVASSK 614
Query: 664 VKNKESSSGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFVLL 723
K+ S++G+ KRKELHGT AL G WG +GA F AYKF+F CNI E+YS F LL
Sbjct: 615 SKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFDFCCNISGEVYSSFSLL 674
Query: 724 IESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVS 783
+ES L +DVG +E+DLYLV K+VKASVS CG++ L E+++KAK F +FFFNG+FG+L
Sbjct: 675 LESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAKYFQQFFFNGMFGKLFV 734
Query: 784 RSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVSAVEFL 843
S S +R FLLQ DT SLW P ++ LLP+E ++ S I WS I+SC S VEFL
Sbjct: 735 GSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE--TNDLASSATIDWSAINSCASIVEFL 792
Query: 844 RQKFSSVAGDCDNGSKVSSPCDTNSSN-------AESTNKIHFANCVLDLNDLREIVVLA 896
++ D D C+T+S E TN IHFAN D N L E+VV+A
Sbjct: 793 KKNSLLDLRDSDGNQ-----CNTSSGQEVLLDDKMEETNLIHFANASSDKNSLEELVVIA 847
Query: 897 IHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQS 956
IHTG++Y I+EAV D SA SPF+ D S+ T++ YF K+YGI L HP QPL++LKQS
Sbjct: 848 IHTGRIYSIVEAVSDSSAMSPFEV--DASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQS 905
Query: 957 HNSHNLLFNFHEKDVGGKSSQTGP-GASKXXXXXXXXXELLYIIDVKRDVLKSMYLLPSL 1015
H++HNLL +F+E+ V + G K ELL IDV R VLKS+YLLPS+
Sbjct: 906 HHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVLKSIYLLPSV 965
Query: 1016 MHRIETLLLSSQLREEINDXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKYV 1075
MHR+E+L+L+SQLREEI+ TT C E+FSMERLELLGDSVLKYV
Sbjct: 966 MHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYV 1025
Query: 1076 VSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHS 1135
SCHLFLKYP+ EG+L+ +RQ +I N+ LH+L T+RKLQGYI + AFEPRRW APGQ S
Sbjct: 1026 ASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAPGQFS 1085
Query: 1136 IYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFAG 1195
++PVPC CG++T EVP+D KF +E+ + +GKSCD GHRW+ SK+++DC E+LIGAY+
Sbjct: 1086 LFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGAYYVS 1145
Query: 1196 GGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLL 1255
GGL ASLH MKWLGID + +P+LV +AI SL Y+PK +E+ LE K+ +EFS K LL
Sbjct: 1146 GGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLL 1205
Query: 1256 LEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNNE 1315
EAITH S L YERLEFLGDSVLD LIT HL+ ++ GE+T+LRSA VNNE
Sbjct: 1206 KEAITHSS---LRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNE 1262
Query: 1316 NFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLLLLGIKAPKALGDLVESIA 1375
NFAQVAV+ N QI++Y + + + I+ PKALGD+VESIA
Sbjct: 1263 NFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESIA 1322
Query: 1376 GAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKE 1435
GA+LIDT+L LD+VW+ F PLLSP+VTPD L+L P R+L+ LCDSLGYF ++K D +
Sbjct: 1323 GALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGVK 1382
Query: 1436 STEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDNHI 1495
+ ++L QL + LL G ++A +AA HLL LEK +S + + DN
Sbjct: 1383 AQATIQL--QLDDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNISRKTSLG----DNQS 1436
Query: 1496 HIHDSSYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSSSEASDVIASTP 1555
+ D +++ HS D LT+ ++E ++ P
Sbjct: 1437 SM--------DVNLACNHS----------DRETLTS-----------ETTEIQSIV--IP 1465
Query: 1556 VISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCEALEGSKGQNCFVSTI 1615
I +MKKG PR L+E CKK WP+P+FD +E K R+ F + E + F STI
Sbjct: 1466 FIGPINMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTI 1525
Query: 1616 TMIMPNEGTIECRGEARSDKKSSYDSAAVKMLHELQR 1652
T+ +PN + GEAR DKKSS+DSA V++L+EL+R
Sbjct: 1526 TLRIPNREAVMYAGEARPDKKSSFDSAVVELLYELER 1562
>AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1531
Length = 1531
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1657 (43%), Positives = 977/1657 (58%), Gaps = 164/1657 (9%)
Query: 10 NPLKRTFDQLYTKPQDDDSPTFINIDPR-RYQNEVFQVARKRNTIAVLDTGTGKTLIAIM 68
N LKR F ++ D + + D Y+ +V++VA+ RN IAVL TG K+ I
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGSYELKVYEVAKNRNIIAVLGTGIDKSEITKR 76
Query: 69 LIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTW 127
LIK + S K+LII LAP V+L +++ +VEEY+G +GVD+W + W
Sbjct: 77 LIKAMGS---SDTDKRLIIFLAPTVNLQ---CCEIRALVNLKVEEYFGAKGVDKWTSQRW 130
Query: 128 EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRAN 187
++E S++DVLVMTPQILL+ L AFLK+EM+ L++IDECH+ TGNHPYA++MK F
Sbjct: 131 DEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHPYAKLMKIFNPEER 190
Query: 188 EKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESCR 247
E F T EG I + NPS SC
Sbjct: 191 EGVEKFATTVK-------------EGPI---------------------LYNPSP--SC- 213
Query: 248 FYDQARFPALSLKPKIEALWLKSDALLSEFQSNYKD----VDSKFKTLHQRMSNDLAKVL 303
+L LK K+E LK DA L Q KD +D+KF+T +R+S D ++L
Sbjct: 214 --------SLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFETYQKRLSIDYREIL 265
Query: 304 YCLEDLGLLCAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESLNLADKM 363
+CL++LGL+CA+ A ++C K S + E E Y++ C LED++ I L DK
Sbjct: 266 HCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDILSTIGVYLPQDDKS 325
Query: 364 ILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNVP 423
++D++ ++ +AV G++SPKL EL + +F + CLI VERII AKVI+RFVK
Sbjct: 326 LVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERIITAKVIERFVKKEA 385
Query: 424 QISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIR 483
+++L V YLT N+ S + A Q EI D F+ GKVNLLF TDV+EEG VP+CSC++
Sbjct: 386 SLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVC 445
Query: 484 FDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVHES 543
FDLPKT+ SY QS+ ++Q+NS+ I+ LERGN KQR+ +++R E + D
Sbjct: 446 FDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQDP-----EAP 500
Query: 544 NLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGCYK 603
NL++ N + V G+ V S++++ +
Sbjct: 501 NLKSCPPPVKNGHGVKEIGSMVIPDSNITVSEEA-------------------------- 534
Query: 604 CKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHI 663
A+ QT+ P + +L CKKL L+++L+ + A
Sbjct: 535 --------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNNLLQSNGKEKVASSK 575
Query: 664 VKNKESSSGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFVLL 723
K+ S++G+ KRKELHGT AL G WG +GA F AYKF+F CNI E+YS F LL
Sbjct: 576 SKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFDFCCNISGEVYSSFSLL 635
Query: 724 IESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVS 783
+ES L +DVG +E+DLYLV K+VKASVS CG++ L E+++KAK F +FFFNG+FG+L
Sbjct: 636 LESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAKYFQQFFFNGMFGKLFV 695
Query: 784 RSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVSAVEFL 843
S S +R FLLQ DT SLW P ++ LLP+E ++ S I WS I+SC S VEFL
Sbjct: 696 GSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE--TNDLASSATIDWSAINSCASIVEFL 753
Query: 844 RQKFSSVAGDCDNGSKVSSPCDTNSSN-------AESTNKIHFANCVLDLNDLREIVVLA 896
++ D D C+T+S E TN IHFAN D N L E+VV+A
Sbjct: 754 KKNSLLDLRDSDGNQ-----CNTSSGQEVLLDDKMEETNLIHFANASSDKNSLEELVVIA 808
Query: 897 IHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQS 956
IHTG++Y I+EAV D SA SPF+ D S+ T++ YF K+YGI L HP QPL++LKQS
Sbjct: 809 IHTGRIYSIVEAVSDSSAMSPFEV--DASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQS 866
Query: 957 HNSHNLLFNFHEKDVGGKSSQTGP-GASKXXXXXXXXXELLYIIDVKRDVLKSMYLLPSL 1015
H++HNLL +F+E+ V + G K ELL IDV R VLKS+YLLPS+
Sbjct: 867 HHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVLKSIYLLPSV 926
Query: 1016 MHRIETLLLSSQLREEINDXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKYV 1075
MHR+E+L+L+SQLREEI+ TT C E+FSMERLELLGDSVLKYV
Sbjct: 927 MHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYV 986
Query: 1076 VSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHS 1135
SCHLFLKYP+ EG+L+ +RQ +I N+ LH+L T+RKLQGYI + AFEPRRW APGQ S
Sbjct: 987 ASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPRRWTAPGQFS 1046
Query: 1136 IYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFAG 1195
++PVPC CG++T EVP+D KF +E+ + +GKSCD GHRW+ SK+++DC E+LIGAY+
Sbjct: 1047 LFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAEALIGAYYVS 1106
Query: 1196 GGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLL 1255
GGL ASLH MKWLGID + +P+LV +AI SL Y+PK +E+ LE K+ +EFS K LL
Sbjct: 1107 GGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLL 1166
Query: 1256 LEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNNE 1315
EAITH S L YERLEFLGDSVLD LIT HL+ ++ GE+T+LRSA VNNE
Sbjct: 1167 KEAITHSS---LRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNE 1223
Query: 1316 NFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLLLLGIKAPKALGDLVESIA 1375
NFAQVAV+ N QI++Y + + + I+ PKALGD+VESIA
Sbjct: 1224 NFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESIA 1283
Query: 1376 GAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKE 1435
GA+LIDT+L LD+VW+ F PLLSP+VTPD L+L P R+L+ LCDSLGYF ++K D +
Sbjct: 1284 GALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGVK 1343
Query: 1436 STEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDNHI 1495
+ ++L QL + LL G ++A +AA HLL LEK +S + + DN
Sbjct: 1344 AQATIQL--QLDDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNISRKTSLG----DNQS 1397
Query: 1496 HIHDSSYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSSSEASDVIASTP 1555
+ D +++ HS D LT+ ++E ++ P
Sbjct: 1398 SM--------DVNLACNHS----------DRETLTS-----------ETTEIQSIV--IP 1426
Query: 1556 VISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCEALEGSKGQNCFVSTI 1615
I +MKKG PR L+E CKK WP+P+FD +E K R+ F + E + F STI
Sbjct: 1427 FIGPINMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTI 1486
Query: 1616 TMIMPNEGTIECRGEARSDKKSSYDSAAVKMLHELQR 1652
T+ +PN + GEAR DKKSS+DSA V++L+EL+R
Sbjct: 1487 TLRIPNREAVMYAGEARPDKKSSFDSAVVELLYELER 1523
>AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 |
chr5:6859571-6869068 REVERSE LENGTH=1702
Length = 1702
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 497/1659 (29%), Positives = 783/1659 (47%), Gaps = 134/1659 (8%)
Query: 25 DDDSPTFINIDPR----RYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQAIKSS 80
DD SP + DPR RYQ E+ + A + N I L TG GKT IA+MLI ++ + S
Sbjct: 110 DDPSPK-MEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSP 168
Query: 81 GKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTWEKEVSENDVLVMT 140
KK + I LAP V LV Q + F+V + G + WE+E++ N+VLVMT
Sbjct: 169 -KKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMT 227
Query: 141 PQILLNALTKAFLKVEMISLMVIDECHNAT--GNHPYARIMKEFYHRAN-EKPMIFGMTA 197
PQILL+ L F+K+E ISL++ DECH+A NHPYA IMK FY + ++P IFGMTA
Sbjct: 228 PQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTA 287
Query: 198 SPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQARFPAL 257
SPVV KG+ + + I+ LE++L+++ Y+VE ++D S +Y A A
Sbjct: 288 SPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDAS 347
Query: 258 SLKPKIEALW--LKSDALLSE---FQSNYKDVDSKFKTLHQRMSNDLAKVLYCLEDLGLL 312
+ E + +K L S ++ K L +R ++L +Y L +LGL
Sbjct: 348 QSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNL---IYTLLNLGLW 404
Query: 313 CAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESL----NLADKMILDVE 368
A +A KI ++ E + C T L + + + N +D + L
Sbjct: 405 GAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL--- 461
Query: 369 SDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNVPQISHL 428
A+ + S KL +LIKI F + C+IFV RI+ A+ + + N+ +
Sbjct: 462 ----AALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSW 517
Query: 429 TVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPK 488
+L G + + +++ + IL F+S ++NLL T V EEG+++ C VIR+DLP+
Sbjct: 518 KSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 577
Query: 489 TVRSYVQSRGRSRQANSQFILMLERGNLKQRN--QHFEIIRTERFMTDAAINKVHESNLR 546
TV S++QSRGR+R S++ +++ GN K+ + ++F+ + +R + E+ R
Sbjct: 578 TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFK-VNEDRMNLEITYRSSEETCPR 636
Query: 547 AFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPME--GCYKC 604
+ Y V TGA +S SS+SL+ +YC +LP + KP F+ P++ G C
Sbjct: 637 L----DEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTIC 692
Query: 605 KLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIV 664
++ LP NA I + AK CL+A +LH +G LND L+P +++ E +
Sbjct: 693 RITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDE--L 750
Query: 665 KNKESSSGTTK-----RKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSG 719
+ E K R +L+ W N ++Y F + IY
Sbjct: 751 SDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKK 810
Query: 720 FVLLIESKLDDDVGNMELDLYLV-SKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLF 778
F ++S L + M++DL+L + V + G + D +++ A+ F E LF
Sbjct: 811 FGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLF 870
Query: 779 GRLVSRSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVS 838
R P E LQ+ +R+ S + Y LLPL L D + + + W I +C+S
Sbjct: 871 ERGELIPDFVPLE----LQDSSRT--SKSTFYLLLPL-CLHD-GESVISVDWVTIRNCLS 922
Query: 839 AVEFLRQKFSSVAGDCDNGSKVSSPCDTNSSNAESTNKIHFANCVLDLNDLREIVVLAIH 898
+ F K SV + + P S + + AN +++D++ +V +
Sbjct: 923 SPIF---KTPSVLVE-----DIFPP---------SGSHLKLANGCWNIDDVKNSLVFTTY 965
Query: 899 TGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQSHN 958
+ + Y + + + SP ++ KS + K YG+ L+HP QPLLR+K +
Sbjct: 966 SKQFYFVADICHGRNGFSPVKESSTKSHVESIY-----KLYGVELKHPAQPLLRVKPLCH 1020
Query: 959 SHNLLFNFHEKDVGGKSSQTGPGASKXXXXXXXXXELLYIIDVKRDVLKSMYLLPSLMHR 1018
NLL N + ++ + + L I + +D+ S+ LLPS+MHR
Sbjct: 1021 VRNLLHNRMQTNLEPQE------LDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHR 1074
Query: 1019 IETLLLSSQLREEIN-DXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKYVVS 1077
+E LL++ +L+ ++ TT +C E S+ERLE+LGD+ LK+ VS
Sbjct: 1075 MENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVS 1134
Query: 1078 CHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHSIY 1137
HLFL + EG+LT RR V+ N+ L +L + LQ YI D A +P ++ A G
Sbjct: 1135 RHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGH---- 1190
Query: 1138 PVPCDCGLETLEVPIDAKFRSEDPKVVVGKS----CDRGHRWMCSKTIADCVESLIGAYF 1193
PC + + + + D ++ + C +GH W+ KTIAD VE+L+GA+
Sbjct: 1191 --PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFL 1247
Query: 1194 AGGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKG 1253
G ++ F+KW+G++ + E V+ A + + + N + +LEN+L Y+F KG
Sbjct: 1248 VDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKG 1307
Query: 1254 LLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVN 1313
LL++A H S G G CY+RLEFLGD+VLD L+T + + ++ G+LT+LRS SVN
Sbjct: 1308 LLVQAFIHPSYNRHGGG-CYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVN 1366
Query: 1314 NENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLLLLGIKAPKALGDLVES 1373
NE A VAV + I +Y ++ S + G + PK LGDLVES
Sbjct: 1367 NEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVES 1426
Query: 1374 IAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDN 1433
GA+ +D +L+ VW L P+ NL++ P ++L LC S + +I
Sbjct: 1427 CLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISAT--K 1484
Query: 1434 KESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDN 1493
K+ VEL V L G NKR ++AA ++ +L+ S + + N
Sbjct: 1485 KDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPLEDVLKN 1544
Query: 1494 HIHIHDS--SYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSS------- 1544
I Y ++ + D + LD NL + + G SS
Sbjct: 1545 GIRNEAKLIGYNEDPIDVVD---------LVGLDVENLNILETFGGNSERSSSYVIRRGL 1595
Query: 1545 ----SEASDVIASTPVISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCE 1600
S+ D + +I +S L+E C W P F+ CE
Sbjct: 1596 PQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFE-----------CCE 1644
Query: 1601 ALEGSKGQNCFVSTITMIM---PNEGTIECRGEARSDKK 1636
EG FV + + + PN T+EC GEAR+ KK
Sbjct: 1645 E-EGPGHLKSFVYKVILEVEDAPNM-TLECYGEARATKK 1681
>AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068
REVERSE LENGTH=1688
Length = 1688
Score = 590 bits (1520), Expect = e-168, Method: Compositional matrix adjust.
Identities = 486/1659 (29%), Positives = 771/1659 (46%), Gaps = 148/1659 (8%)
Query: 25 DDDSPTFINIDPR----RYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQAIKSS 80
DD SP + DPR RYQ E+ + A + N I L TG GKT IA+MLI ++ + S
Sbjct: 110 DDPSPK-MEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSP 168
Query: 81 GKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTWEKEVSENDVLVMT 140
KK + I LAP V LV Q + F+V + G + WE+E++ N+
Sbjct: 169 -KKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANE----- 222
Query: 141 PQILLNALTKAFLKVEMISLMVIDECHNAT--GNHPYARIMKEFYHRAN-EKPMIFGMTA 197
F+K+E ISL++ DECH+A NHPYA IMK FY + ++P IFGMTA
Sbjct: 223 ---------HCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTA 273
Query: 198 SPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQARFPAL 257
SPVV KG+ + + I+ LE++L+++ Y+VE ++D S +Y A A
Sbjct: 274 SPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDAS 333
Query: 258 SLKPKIEALW--LKSDALLSE---FQSNYKDVDSKFKTLHQRMSNDLAKVLYCLEDLGLL 312
+ E + +K L S ++ K L +R ++L +Y L +LGL
Sbjct: 334 QSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNL---IYTLLNLGLW 390
Query: 313 CAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESL----NLADKMILDVE 368
A +A KI ++ E + C T L + + + N +D + L
Sbjct: 391 GAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL--- 447
Query: 369 SDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNVPQISHL 428
A+ + S KL +LIKI F + C+IFV RI+ A+ + + N+ +
Sbjct: 448 ----AALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSW 503
Query: 429 TVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPK 488
+L G + + +++ + IL F+S ++NLL T V EEG+++ C VIR+DLP+
Sbjct: 504 KSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 563
Query: 489 TVRSYVQSRGRSRQANSQFILMLERGNLKQRN--QHFEIIRTERFMTDAAINKVHESNLR 546
TV S++QSRGR+R S++ +++ GN K+ + ++F+ + +R + E+ R
Sbjct: 564 TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFK-VNEDRMNLEITYRSSEETCPR 622
Query: 547 AFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPME--GCYKC 604
+ Y V TGA +S SS+SL+ +YC +LP + KP F+ P++ G C
Sbjct: 623 L----DEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTIC 678
Query: 605 KLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIV 664
++ LP NA I + AK CL+A +LH +G LND L+P +++ E +
Sbjct: 679 RITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDE--L 736
Query: 665 KNKESSSGTTK-----RKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSG 719
+ E K R +L+ W N ++Y F + IY
Sbjct: 737 SDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKK 796
Query: 720 FVLLIESKLDDDVGNMELDLYLV-SKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLF 778
F ++S L + M++DL+L + V + G + D +++ A+ F E LF
Sbjct: 797 FGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLF 856
Query: 779 GRLVSRSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVS 838
R P E LQ+ +R+ S + Y LLPL L D + + + W I +C+S
Sbjct: 857 ERGELIPDFVPLE----LQDSSRT--SKSTFYLLLPL-CLHD-GESVISVDWVTIRNCLS 908
Query: 839 AVEFLRQKFSSVAGDCDNGSKVSSPCDTNSSNAESTNKIHFANCVLDLNDLREIVVLAIH 898
+ F K SV + + P S + + AN +++D++ +V +
Sbjct: 909 SPIF---KTPSVLVE-----DIFPP---------SGSHLKLANGCWNIDDVKNSLVFTTY 951
Query: 899 TGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQSHN 958
+ + Y + + + SP ++ KS + K YG+ L+HP QPLLR+K +
Sbjct: 952 SKQFYFVADICHGRNGFSPVKESSTKSHVESIY-----KLYGVELKHPAQPLLRVKPLCH 1006
Query: 959 SHNLLFNFHEKDVGGKSSQTGPGASKXXXXXXXXXELLYIIDVKRDVLKSMYLLPSLMHR 1018
NLL N + ++ + + L I + +D+ S+ LLPS+MHR
Sbjct: 1007 VRNLLHNRMQTNLEPQE------LDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHR 1060
Query: 1019 IETLLLSSQLREEIN-DXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKYVVS 1077
+E LL++ +L+ ++ TT +C E S+ERLE+LGD+ LK+ VS
Sbjct: 1061 MENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVS 1120
Query: 1078 CHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHSIY 1137
HLFL + EG+LT RR V+ N+ L +L + LQ YI D A +P ++ A G
Sbjct: 1121 RHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGH---- 1176
Query: 1138 PVPCDCGLETLEVPIDAKFRSEDPKVVVGKS----CDRGHRWMCSKTIADCVESLIGAYF 1193
PC + + + + D ++ + C +GH W+ KTIAD VE+L+GA+
Sbjct: 1177 --PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFL 1233
Query: 1194 AGGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKG 1253
G ++ F+KW+G++ + E V+ A + + + N + +LEN+L Y+F KG
Sbjct: 1234 VDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKG 1293
Query: 1254 LLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVN 1313
LL++A H S G G CY+RLEFLGD+VLD L+T + + ++ G+LT+LRS SVN
Sbjct: 1294 LLVQAFIHPSYNRHGGG-CYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVN 1352
Query: 1314 NENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLLLLGIKAPKALGDLVES 1373
NE A VAV + I +Y ++ S + G + PK LGDLVES
Sbjct: 1353 NEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVES 1412
Query: 1374 IAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDN 1433
GA+ +D +L+ VW L P+ NL++ P ++L LC S + +I
Sbjct: 1413 CLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISAT--K 1470
Query: 1434 KESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDN 1493
K+ VEL V L G NKR ++AA ++ +L+ S + + N
Sbjct: 1471 KDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPLEDVLKN 1530
Query: 1494 HIHIHDS--SYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSS------- 1544
I Y ++ + D + LD NL + + G SS
Sbjct: 1531 GIRNEAKLIGYNEDPIDVVD---------LVGLDVENLNILETFGGNSERSSSYVIRRGL 1581
Query: 1545 ----SEASDVIASTPVISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCE 1600
S+ D + +I +S L+E C W P F+ CE
Sbjct: 1582 PQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFE-----------CCE 1630
Query: 1601 ALEGSKGQNCFVSTITMIM---PNEGTIECRGEARSDKK 1636
EG FV + + + PN T+EC GEAR+ KK
Sbjct: 1631 E-EGPGHLKSFVYKVILEVEDAPNM-TLECYGEARATKK 1667
>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
REVERSE LENGTH=1388
Length = 1388
Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust.
Identities = 467/1492 (31%), Positives = 730/1492 (48%), Gaps = 146/1492 (9%)
Query: 17 DQLYTKPQDDDSPTFINIDPRRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQA 76
D + T+ D S + ++ R YQ E + A K+NTI L+TG+GKTLIAIML++ A
Sbjct: 6 DAMETETTDQVSASPLHF-ARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL 64
Query: 77 IKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSEND 135
+ + L P V LV Q LK HT +V Y+G GVD W+ TW++EV + +
Sbjct: 65 FRKPSPC-FCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYE 123
Query: 136 VLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHR-----ANEKP 190
VLVMTP ILL+AL +FL + MI ++++DECH+A G HPYA IM+EFYH+ + P
Sbjct: 124 VLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVP 183
Query: 191 MIFGMTASPVVKKGNSSTLDCE-GQISELESILDSQRYTVEDRTEMDVCNPSAKESCRFY 249
IFGMTAS V KG + LD +I ELE++++S+ YT E+ + + P + S ++Y
Sbjct: 184 RIFGMTASLVKTKGEN--LDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 250 DQARFPA---LSLKPKIEALWLKSDALLSEFQSNYKDVDSKFKTLHQRMSNDLAKVLYCL 306
+ P+ SL K+E L +K L N VDS K L R+S+ L YCL
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRL-LRISSTLT---YCL 297
Query: 307 EDLGLLCAYEAVKICHAKF--SKIEGECEVYRKGY--RQCITILEDVIQIIEESLNLADK 362
+DLG+L A +A + A S + GE ++ + C ++ + I + LN +
Sbjct: 298 DDLGILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWS-- 355
Query: 363 MILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNV 422
V + NA + G ++ K LI+ + + C+IFV+R+I A V++ + +
Sbjct: 356 ----VANINGNA-EAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEI 410
Query: 423 -PQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCV 481
P ++ Y+ GN++ + +Q EI++ FR G VN++ T +LEEG++V +C+ V
Sbjct: 411 LPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLV 470
Query: 482 IRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVH 541
IRFD + S++QSRGR+R NS +++M+E G+L +++ + + + M + +++
Sbjct: 471 IRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSL 530
Query: 542 ESNLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGC 601
+ + V+STGA+V+L SS+SLI YC +LP Y P F+ +G
Sbjct: 531 VPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQG- 589
Query: 602 YKCKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAH 661
C L LP + + + + ++ K VCL+AC +LH++GAL+DHLVP + A
Sbjct: 590 -SCTLYLPKSCPVKEVKAEANN--KVLKQAVCLKACIQLHKVGALSDHLVP---DMVVAE 643
Query: 662 HIVKNKESSSGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFV 721
+ + E T++ L + +PE ++ Y N + V
Sbjct: 644 TVSQKLEKIQYNTEQPCYFPP----ELVSQFSAQPE-TTYHFYLIRMKPNSPRNFHLNDV 698
Query: 722 LL-IESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGR 780
LL L+DD+GN L + ++S G L E+++ + F F L
Sbjct: 699 LLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDH 758
Query: 781 LVSRSTSTPGERVFLLQEDTRSLWSPTNL---YFLLPLEKLSDVCKGSLKIHWSGISSC- 836
V L E L + Y L+P S + I W I S
Sbjct: 759 SVEN-----------LMEALNGLHLRDGVALDYLLVP----STHSHETSLIDWEVIRSVN 803
Query: 837 VSAVEFLRQKFSSVAGDCDNGSKVSSPCDTN-SSNAESTNKIHFANCVLDLNDLREIVVL 895
+++ E L + C TN +S T F CV ++ +V
Sbjct: 804 LTSHEVLEKH---------------ENCSTNGASRILHTKDGLFCTCV-----VQNALVY 843
Query: 896 AIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQ 955
H G VYC + +L+ S N T+ Y+ +R+GI L +PLL +
Sbjct: 844 TPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQ---TYIEYYEERHGIQLNFVDEPLLNGRH 900
Query: 956 SHNSHNLLF---NFHEKDVGGKSSQTGPGASKXXXXXXXXXELLYII--DVKRDVLKSMY 1010
H+ L EK+ + + P EL ++I + D++ S
Sbjct: 901 IFTLHSYLHMAKKKKEKEHDREFVELPP-------------ELCHVILSPISVDMIYSYT 947
Query: 1011 LLPSLMHRIETLLLSSQLREEINDXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDS 1070
+PS+M RIE+LL++ L++ I TT +C + F +E LE LGDS
Sbjct: 948 FIPSVMQRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDS 1003
Query: 1071 VLKYVVSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVA 1130
LKY V LF +HEG L+ ++ +I N L + G +KLQG+I D FEP+ W+
Sbjct: 1004 FLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMV 1063
Query: 1131 PGQHS-IYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLI 1189
PGQ S Y + D E+ + + ++ R + K++AD VESLI
Sbjct: 1064 PGQSSAAYSLVNDTLPESRNIYVASR------------------RNLKRKSVADVVESLI 1105
Query: 1190 GAYFAGGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEF 1249
GAY + GG +A+L FM W+GI + + +++ + + K + +E+ L Y F
Sbjct: 1106 GAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQA-----EKLVNVGYMESLLNYSF 1160
Query: 1250 STKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRS 1309
K LL+EA+TH S CY+RLEFLGDSVLD LIT HLY + + G LT++RS
Sbjct: 1161 EDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRS 1220
Query: 1310 ASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLL-LLG----IKAP 1364
ASVNNE +A VAV+ N IS + VSE E ++L G I P
Sbjct: 1221 ASVNNECYALVAVKANLHKHILYASHHLHKHIS---RTVSEFEQSSLQSTFGWESDISFP 1277
Query: 1365 KALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYF 1424
K LGD++ES+AGAI +D+ + + V+ PLL ++TP+ ++L P R+L+ LC +
Sbjct: 1278 KVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFE 1337
Query: 1425 MKIKEKYDNKESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLE 1476
+ + +D+ + V+ K +K++AK+ A +LN L+
Sbjct: 1338 LSKAKDFDS------FTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1383
>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
chr3:768020-774833 REVERSE LENGTH=1388
Length = 1388
Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust.
Identities = 467/1492 (31%), Positives = 730/1492 (48%), Gaps = 146/1492 (9%)
Query: 17 DQLYTKPQDDDSPTFINIDPRRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQA 76
D + T+ D S + ++ R YQ E + A K+NTI L+TG+GKTLIAIML++ A
Sbjct: 6 DAMETETTDQVSASPLHF-ARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL 64
Query: 77 IKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSEND 135
+ + L P V LV Q LK HT +V Y+G GVD W+ TW++EV + +
Sbjct: 65 FRKPSPC-FCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYE 123
Query: 136 VLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHR-----ANEKP 190
VLVMTP ILL+AL +FL + MI ++++DECH+A G HPYA IM+EFYH+ + P
Sbjct: 124 VLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVP 183
Query: 191 MIFGMTASPVVKKGNSSTLDCE-GQISELESILDSQRYTVEDRTEMDVCNPSAKESCRFY 249
IFGMTAS V KG + LD +I ELE++++S+ YT E+ + + P + S ++Y
Sbjct: 184 RIFGMTASLVKTKGEN--LDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 250 DQARFPA---LSLKPKIEALWLKSDALLSEFQSNYKDVDSKFKTLHQRMSNDLAKVLYCL 306
+ P+ SL K+E L +K L N VDS K L R+S+ L YCL
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRL-LRISSTLT---YCL 297
Query: 307 EDLGLLCAYEAVKICHAKF--SKIEGECEVYRKGY--RQCITILEDVIQIIEESLNLADK 362
+DLG+L A +A + A S + GE ++ + C ++ + I + LN +
Sbjct: 298 DDLGILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWS-- 355
Query: 363 MILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNV 422
V + NA + G ++ K LI+ + + C+IFV+R+I A V++ + +
Sbjct: 356 ----VANINGNA-EAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEI 410
Query: 423 -PQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCV 481
P ++ Y+ GN++ + +Q EI++ FR G VN++ T +LEEG++V +C+ V
Sbjct: 411 LPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLV 470
Query: 482 IRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVH 541
IRFD + S++QSRGR+R NS +++M+E G+L +++ + + + M + +++
Sbjct: 471 IRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSL 530
Query: 542 ESNLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGC 601
+ + V+STGA+V+L SS+SLI YC +LP Y P F+ +G
Sbjct: 531 VPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQG- 589
Query: 602 YKCKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAH 661
C L LP + + + + ++ K VCL+AC +LH++GAL+DHLVP + A
Sbjct: 590 -SCTLYLPKSCPVKEVKAEANN--KVLKQAVCLKACIQLHKVGALSDHLVP---DMVVAE 643
Query: 662 HIVKNKESSSGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFV 721
+ + E T++ L + +PE ++ Y N + V
Sbjct: 644 TVSQKLEKIQYNTEQPCYFPP----ELVSQFSAQPE-TTYHFYLIRMKPNSPRNFHLNDV 698
Query: 722 LL-IESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGR 780
LL L+DD+GN L + ++S G L E+++ + F F L
Sbjct: 699 LLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDH 758
Query: 781 LVSRSTSTPGERVFLLQEDTRSLWSPTNL---YFLLPLEKLSDVCKGSLKIHWSGISSC- 836
V L E L + Y L+P S + I W I S
Sbjct: 759 SVEN-----------LMEALNGLHLRDGVALDYLLVP----STHSHETSLIDWEVIRSVN 803
Query: 837 VSAVEFLRQKFSSVAGDCDNGSKVSSPCDTN-SSNAESTNKIHFANCVLDLNDLREIVVL 895
+++ E L + C TN +S T F CV ++ +V
Sbjct: 804 LTSHEVLEKH---------------ENCSTNGASRILHTKDGLFCTCV-----VQNALVY 843
Query: 896 AIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQ 955
H G VYC + +L+ S N T+ Y+ +R+GI L +PLL +
Sbjct: 844 TPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQ---TYIEYYEERHGIQLNFVDEPLLNGRH 900
Query: 956 SHNSHNLLF---NFHEKDVGGKSSQTGPGASKXXXXXXXXXELLYII--DVKRDVLKSMY 1010
H+ L EK+ + + P EL ++I + D++ S
Sbjct: 901 IFTLHSYLHMAKKKKEKEHDREFVELPP-------------ELCHVILSPISVDMIYSYT 947
Query: 1011 LLPSLMHRIETLLLSSQLREEINDXXXXXXXXXXXXXXXXTTSRCCENFSMERLELLGDS 1070
+PS+M RIE+LL++ L++ I TT +C + F +E LE LGDS
Sbjct: 948 FIPSVMQRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDS 1003
Query: 1071 VLKYVVSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVA 1130
LKY V LF +HEG L+ ++ +I N L + G +KLQG+I D FEP+ W+
Sbjct: 1004 FLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMV 1063
Query: 1131 PGQHS-IYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLI 1189
PGQ S Y + D E+ + + ++ R + K++AD VESLI
Sbjct: 1064 PGQSSAAYSLVNDTLPESRNIYVASR------------------RNLKRKSVADVVESLI 1105
Query: 1190 GAYFAGGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEF 1249
GAY + GG +A+L FM W+GI + + +++ + + K + +E+ L Y F
Sbjct: 1106 GAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQA-----EKLVNVGYMESLLNYSF 1160
Query: 1250 STKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRS 1309
K LL+EA+TH S CY+RLEFLGDSVLD LIT HLY + + G LT++RS
Sbjct: 1161 EDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRS 1220
Query: 1310 ASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLL-LLG----IKAP 1364
ASVNNE +A VAV+ N IS + VSE E ++L G I P
Sbjct: 1221 ASVNNECYALVAVKANLHKHILYASHHLHKHIS---RTVSEFEQSSLQSTFGWESDISFP 1277
Query: 1365 KALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYF 1424
K LGD++ES+AGAI +D+ + + V+ PLL ++TP+ ++L P R+L+ LC +
Sbjct: 1278 KVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFE 1337
Query: 1425 MKIKEKYDNKESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLE 1476
+ + +D+ + V+ K +K++AK+ A +LN L+
Sbjct: 1338 LSKAKDFDS------FTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 1383
>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
REVERSE LENGTH=1374
Length = 1374
Score = 543 bits (1400), Expect = e-154, Method: Compositional matrix adjust.
Identities = 435/1406 (30%), Positives = 685/1406 (48%), Gaps = 144/1406 (10%)
Query: 103 LKHHTGFQVEEYYG-RGVDEWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKVEMISLM 161
LK HT +V Y+G GVD W+ TW++EV + +VLVMTP ILL+AL +FL + MI ++
Sbjct: 76 LKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHSFLSLSMIKVL 135
Query: 162 VIDECHNATGNHPYARIMKEFYHR-----ANEKPMIFGMTASPVVKKGNSSTLDCE-GQI 215
++DECH+A G HPYA IM+EFYH+ + P IFGMTAS V KG + LD +I
Sbjct: 136 IVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKGEN--LDSYWKKI 193
Query: 216 SELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQARFPA---LSLKPKIEALWLKSDA 272
ELE++++S+ YT E+ + + P + S ++Y + P+ SL K+E L +K
Sbjct: 194 HELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERLTIKHRL 253
Query: 273 LLSEFQSNYKDVDSKFKTLHQRMSNDLAKVLYCLEDLGLLCAYEAVKICHAKF--SKIEG 330
L N VDS K L R+S+ L YCL+DLG+L A +A + A S + G
Sbjct: 254 SLGTLDLNSSTVDSVEKRL-LRISSTLT---YCLDDLGILLAQKAAQSLSASQNDSFLWG 309
Query: 331 ECEVYRKGY--RQCITILEDVIQIIEESLNLADKMILDVESDYSNAVDKGYISPKLHELI 388
E ++ + C ++ + I + LN + V + NA + G ++ K LI
Sbjct: 310 ELNMFSVALVKKFCSDASQEFLAEIPQGLNWS------VANINGNA-EAGLLTLKTVCLI 362
Query: 389 KIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNV-PQISHLTVSYLTGNHTSVDALAPTR 447
+ + + C+IFV+R+I A V++ + + P ++ Y+ GN++ + +
Sbjct: 363 ETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQTRKK 422
Query: 448 QKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQF 507
Q EI++ FR G VN++ T +LEEG++V +C+ VIRFD + S++QSRGR+R NS +
Sbjct: 423 QNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDY 482
Query: 508 ILMLERGNLKQRNQHFEIIRTERFMTDAAINKVHESNLRAFTVGNTNAYVVDSTGASVSL 567
++M+E G+L +++ + + + M + +++ + + V+STGA+V+L
Sbjct: 483 LMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFRVESTGATVTL 542
Query: 568 HSSLSLINQYCEKLPRVRYSCVKPTFESLPMEGCYKCKLILPPNAAFQTIVGPSGKTARL 627
SS+SLI YC +LP Y P F+ +G C L LP + + + + ++
Sbjct: 543 SSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQG--SCTLYLPKSCPVKEVKAEANN--KV 598
Query: 628 AKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIVKNKESSSGTTKRKELHGTASIRA 687
K VCL+AC +LH++GAL+DHLVP + A + + E T++
Sbjct: 599 LKQAVCLKACIQLHKVGALSDHLVP---DMVVAETVSQKLEKIQYNTEQPCYFPP----E 651
Query: 688 LCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFVLL-IESKLDDDVGNMELDLYLVSKIV 746
L + +PE ++ Y N + VLL L+DD+GN L +
Sbjct: 652 LVSQFSAQPE-TTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTI 710
Query: 747 KASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVSRSTSTPGERVFLLQEDTRSLWSP 806
++S G L E+++ + F F L V L E L
Sbjct: 711 AVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVEN-----------LMEALNGLHLR 759
Query: 807 TNL---YFLLPLEKLSDVCKGSLKIHWSGISSC-VSAVEFLRQKFSSVAGDCDNGSKVSS 862
+ Y L+P S + I W I S +++ E L +
Sbjct: 760 DGVALDYLLVP----STHSHETSLIDWEVIRSVNLTSHEVLEKH---------------E 800
Query: 863 PCDTN-SSNAESTNKIHFANCVLDLNDLREIVVLAIHTGKVYCIIEAVMDLSAESPFDGN 921
C TN +S T F CV ++ +V H G VYC + +L+ S
Sbjct: 801 NCSTNGASRILHTKDGLFCTCV-----VQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKR 855
Query: 922 NDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQSHNSHNLLF---NFHEKDVGGKSSQT 978
N T+ Y+ +R+GI L +PLL + H+ L EK+ + +
Sbjct: 856 NSGDQ---TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVEL 912
Query: 979 GPGASKXXXXXXXXXELLYII--DVKRDVLKSMYLLPSLMHRIETLLLSSQLREEINDXX 1036
P EL ++I + D++ S +PS+M RIE+LL++ L++ I
Sbjct: 913 PP-------------ELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI---- 955
Query: 1037 XXXXXXXXXXXXXXTTSRCCENFSMERLELLGDSVLKYVVSCHLFLKYPENHEGKLTARR 1096
TT +C + F +E LE LGDS LKY V LF +HEG L+ ++
Sbjct: 956 PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKK 1015
Query: 1097 QQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHS-IYPVPCDCGLETLEVPIDAK 1155
+I N L + G +KLQG+I D FEP+ W+ PGQ S Y + D E+ + + ++
Sbjct: 1016 DGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASR 1075
Query: 1156 FRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFAGGGLIASLHFMKWLGIDAELE 1215
R + K++AD VESLIGAY + GG +A+L FM W+GI +
Sbjct: 1076 ------------------RNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFT 1117
Query: 1216 PSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYER 1275
+ +++ + + K + +E+ L Y F K LL+EA+TH S CY+R
Sbjct: 1118 TTKIQRDSPIQA-----EKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQR 1172
Query: 1276 LEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXX 1335
LEFLGDSVLD LIT HLY + + G LT++RSASVNNE +A VAV+ N
Sbjct: 1173 LEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASH 1232
Query: 1336 XXXNQISEYAKVVSESENNTLL-LLG----IKAPKALGDLVESIAGAILIDTKLSLDEVW 1390
IS + VSE E ++L G I PK LGD++ES+AGAI +D+ + + V+
Sbjct: 1233 HLHKHIS---RTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1289
Query: 1391 KFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKESTEHVELSVQLPNAL 1450
PLL ++TP+ ++L P R+L+ LC + + + +D+ + V+
Sbjct: 1290 ASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKAKDFDS------FTVEVKAKEMS 1343
Query: 1451 LVQKGKGPNKRIAKEQAAFHLLNDLE 1476
K +K++AK+ A +LN L+
Sbjct: 1344 FAHTAKASDKKMAKKLAYKEVLNLLK 1369
>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1909
Length = 1909
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 280/865 (32%), Positives = 441/865 (50%), Gaps = 110/865 (12%)
Query: 37 RRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQAIKSSGKKKLIIVLAPIVHLV 96
RRYQ +V + A+ +NTIA L+TG GKTLIAI+LIK + + + S +K L + L P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 97 HQLYNDLKHHTGFQVEEYYGR-GVDEWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKV 155
+Q +++ T FQV Y G G D W+ + W++E VLVMT QILLN L + +++
Sbjct: 310 YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369
Query: 156 EMISLMVIDECHNATGNHPYARIMKEFYHRA--NEKPMIFGMTASPVVKKGNSSTLDCEG 213
E I L+++DECH+A HPY+ +M EFYH +++P IFGMTASPV KG SS +DC
Sbjct: 370 ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429
Query: 214 QISELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQA-RFPAL--SLKPKIEALWLKS 270
+I LE+ LDS T++DR E++ P E YD+A +L ++K I A+ +
Sbjct: 430 KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489
Query: 271 DA--------LLSEFQSNYKDVDSKFKTLHQRMSNDLAKVL--------YCLEDLGLLCA 314
A + + KD + + +R +D A L Y L +LG CA
Sbjct: 490 QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549
Query: 315 YEAVKICHAKFSKIEGECEV-YRKGYRQCITILEDVIQIIE------------------- 354
Y K+ + S ++ + V ++ + + L +V+ +++
Sbjct: 550 Y---KVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKP 606
Query: 355 ESLNLADKM----ILD---------VESDYSNAVDKGYISPKLHELIKIFHTFGESNEVL 401
E+ N D+M + D V+ AV G ++PK+ LIK+ + + +
Sbjct: 607 ENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFR 666
Query: 402 CLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVN 461
++FVER++AA V+ + +P +S + + + G H + + ++ ++ + FR G V
Sbjct: 667 AIVFVERVVAALVLPKVFAELPSLSFIRCASMIG-HNNSQEMKSSQMQDTISKFRDGHVT 725
Query: 462 LLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQ 521
LL T V EEG+++ C+ V+RFDL KTV +Y+QSRGR+R+ S +ILM+ERGN+
Sbjct: 726 LLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNV----S 781
Query: 522 HFEIIR----TERFMTDAAINKVHESNLR------AFTVGNTNAYVVDSTGASVSLHSSL 571
H +R +E + AI + S+L+ + Y V++TGA VSL+S++
Sbjct: 782 HAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAV 841
Query: 572 SLINQYCEKLPRVRYSCVKPTFESLPMEGC-----YKCKLILPPNAAFQTIVGPSGKTAR 626
L++ YC +LP RY+ ++P F E Y C+L LP NA F+ + GP + R
Sbjct: 842 GLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMR 901
Query: 627 LAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIVKNKESS--SGTTKRKELHGTAS 684
LA+ VCL ACKKLH+MGA D L+P +A ++ E GT + +E +
Sbjct: 902 LAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGV 961
Query: 685 IRALCGAWGNKPE-----GANFNAYKFEFTC--------NIVSEIYSGFVLLIESKLDDD 731
L G W + + F+ Y + C +SE+ S F +L ++LD +
Sbjct: 962 ADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAE 1020
Query: 732 VGNMELDLYLV-SKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVSRSTSTPG 790
V +M +DLY+ + I KAS++ G +D+ Q+ K FH + + V ST TP
Sbjct: 1021 VLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPST-TP- 1078
Query: 791 ERVFLLQEDTRSLWSPTNLYFLLPL 815
W P Y +P+
Sbjct: 1079 -------------WDPAKAYLFVPV 1090
Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 216/610 (35%), Positives = 314/610 (51%), Gaps = 37/610 (6%)
Query: 873 STNKIHFANCVLDLNDLREIVVLAIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPI--- 929
S K+ A+ + DL +V A H+GK + + D+SAE+ F + P+
Sbjct: 1195 SKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFP-RKEGYLGPLEYN 1253
Query: 930 TFSNYFLKRYGITLRHPGQPLLRLKQSHNSHNLLFNFHEKDVGGKSSQTGPGAS--KXXX 987
T+++Y+ ++YG+ L QPL++ + NLL E Q+G +
Sbjct: 1254 TYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFE--------QSGESETVLDKTY 1305
Query: 988 XXXXXXELLYIIDVKRDVLKSMYLLPSLMHRIETLLLSSQLREEINDXXXXXXXXXXXXX 1047
EL + + +++ LPS+M R+E++LL+ QL+ I+
Sbjct: 1306 YVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKIL 1360
Query: 1048 XXXTTSRCCENFSMERLELLGDSVLKYVVSCHLFLKYPENHEGKLTARRQQVICNATLHK 1107
T + C E F ER ELLGD+ LK+VVS LFLKYP+ HEG+LT RQQ++ N L++
Sbjct: 1361 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQ 1420
Query: 1108 LGTNRKLQGYILDSAFEPRRWVAPGQHSIYPVPCDCGLETLEVPIDAKFRSEDPKVVVGK 1167
+ LQ YI F P RW APG ++ G + E+ V
Sbjct: 1421 FALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDG 1480
Query: 1168 SCDRG--------HRWMCSKTIADCVESLIGAYFAGGGLIASLHFMKWLGIDAELEPSLV 1219
+ G +R + SKT+AD VE+LIG Y+ GG IA+ H MKW+GI E +P V
Sbjct: 1481 EMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEV 1540
Query: 1220 EKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFL 1279
+ + ++ V KS + LE L YEF KGLL+EAITH S G CY+RLEF+
Sbjct: 1541 DGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFV 1599
Query: 1280 GDSVLDVLITWHLYQSHTDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXN 1339
GD+VLD LIT HL+ ++T + G LT+LR+A+VNNENFA+VAV+
Sbjct: 1600 GDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEK 1659
Query: 1340 QISEYAK-VVSESEN---NTLLLLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNP 1395
QI E+ K V +ES N+ L KAPK LGD+VESIAGAI +D+ WK F P
Sbjct: 1660 QIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQP 1719
Query: 1396 LLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKESTEHVELSVQLPNALLVQKG 1455
LL P+VTP+ L + P R+L C ++ K +T VE+ + + + V
Sbjct: 1720 LLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTAT--VEVFI---DGVQVGVA 1774
Query: 1456 KGPNKRIAKE 1465
+ P K++A++
Sbjct: 1775 QNPQKKMAQK 1784
>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1910
Length = 1910
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 280/866 (32%), Positives = 441/866 (50%), Gaps = 111/866 (12%)
Query: 37 RRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQAIKSSGKKKLIIVLAPIVHLV 96
RRYQ +V + A+ +NTIA L+TG GKTLIAI+LIK + + + S +K L + L P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 97 HQLYNDLKHHTGFQVEEYYGR-GVDEWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKV 155
+Q +++ T FQV Y G G D W+ + W++E VLVMT QILLN L + +++
Sbjct: 310 YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369
Query: 156 EMISLMVIDECHNATGNHPYARIMKEFYHRA--NEKPMIFGMTASPVVKKGNSSTLDCEG 213
E I L+++DECH+A HPY+ +M EFYH +++P IFGMTASPV KG SS +DC
Sbjct: 370 ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429
Query: 214 QISELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQA-RFPAL--SLKPKIEALWLKS 270
+I LE+ LDS T++DR E++ P E YD+A +L ++K I A+ +
Sbjct: 430 KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489
Query: 271 DA--------LLSEFQSNYKDVDSKFKTLHQRMSNDLAKVL--------YCLEDLGLLCA 314
A + + KD + + +R +D A L Y L +LG CA
Sbjct: 490 QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549
Query: 315 YEAVKICHAKFSKIEGECEV-YRKGYRQCITILEDVIQIIE------------------- 354
Y K+ + S ++ + V ++ + + L +V+ +++
Sbjct: 550 Y---KVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKP 606
Query: 355 ESLNLADKM----ILD---------VESDYSNAVDKGYISPKLHELIKIFHTFGESNEVL 401
E+ N D+M + D V+ AV G ++PK+ LIK+ + + +
Sbjct: 607 ENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFR 666
Query: 402 CLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVN 461
++FVER++AA V+ + +P +S + + + G H + + ++ ++ + FR G V
Sbjct: 667 AIVFVERVVAALVLPKVFAELPSLSFIRCASMIG-HNNSQEMKSSQMQDTISKFRDGHVT 725
Query: 462 LLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQ 521
LL T V EEG+++ C+ V+RFDL KTV +Y+QSRGR+R+ S +ILM+ERGN+
Sbjct: 726 LLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNV----S 781
Query: 522 HFEIIR----TERFMTDAAINKVHESNLR------AFTVGNTNAYVVDSTGASVSLHSSL 571
H +R +E + AI + S+L+ + Y V++TGA VSL+S++
Sbjct: 782 HAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAV 841
Query: 572 SLINQYCEKLPRVRYSCVKPTFESLPMEGC-----YKCKLILPPNAAFQTIVGPSGKTAR 626
L++ YC +LP RY+ ++P F E Y C+L LP NA F+ + GP + R
Sbjct: 842 GLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMR 901
Query: 627 LAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIVKNKESS--SGTTKRKELHGTAS 684
LA+ VCL ACKKLH+MGA D L+P +A ++ E GT + +E +
Sbjct: 902 LAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGV 961
Query: 685 IRALCGAWGNKPE-----GANFNAYKFEFTC--------NIVSEIYSGFVLLIESKLDDD 731
L G W + + F+ Y + C +SE+ S F +L ++LD +
Sbjct: 962 ADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAE 1020
Query: 732 VG-NMELDLYLV-SKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVSRSTSTP 789
V +M +DLY+ + I KAS++ G +D+ Q+ K FH + + V ST TP
Sbjct: 1021 VVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPST-TP 1079
Query: 790 GERVFLLQEDTRSLWSPTNLYFLLPL 815
W P Y +P+
Sbjct: 1080 --------------WDPAKAYLFVPV 1091
Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 216/610 (35%), Positives = 314/610 (51%), Gaps = 37/610 (6%)
Query: 873 STNKIHFANCVLDLNDLREIVVLAIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPI--- 929
S K+ A+ + DL +V A H+GK + + D+SAE+ F + P+
Sbjct: 1196 SKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFP-RKEGYLGPLEYN 1254
Query: 930 TFSNYFLKRYGITLRHPGQPLLRLKQSHNSHNLLFNFHEKDVGGKSSQTGPGAS--KXXX 987
T+++Y+ ++YG+ L QPL++ + NLL E Q+G +
Sbjct: 1255 TYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFE--------QSGESETVLDKTY 1306
Query: 988 XXXXXXELLYIIDVKRDVLKSMYLLPSLMHRIETLLLSSQLREEINDXXXXXXXXXXXXX 1047
EL + + +++ LPS+M R+E++LL+ QL+ I+
Sbjct: 1307 YVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKIL 1361
Query: 1048 XXXTTSRCCENFSMERLELLGDSVLKYVVSCHLFLKYPENHEGKLTARRQQVICNATLHK 1107
T + C E F ER ELLGD+ LK+VVS LFLKYP+ HEG+LT RQQ++ N L++
Sbjct: 1362 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQ 1421
Query: 1108 LGTNRKLQGYILDSAFEPRRWVAPGQHSIYPVPCDCGLETLEVPIDAKFRSEDPKVVVGK 1167
+ LQ YI F P RW APG ++ G + E+ V
Sbjct: 1422 FALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDG 1481
Query: 1168 SCDRG--------HRWMCSKTIADCVESLIGAYFAGGGLIASLHFMKWLGIDAELEPSLV 1219
+ G +R + SKT+AD VE+LIG Y+ GG IA+ H MKW+GI E +P V
Sbjct: 1482 EMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEV 1541
Query: 1220 EKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFL 1279
+ + ++ V KS + LE L YEF KGLL+EAITH S G CY+RLEF+
Sbjct: 1542 DGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFV 1600
Query: 1280 GDSVLDVLITWHLYQSHTDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXN 1339
GD+VLD LIT HL+ ++T + G LT+LR+A+VNNENFA+VAV+
Sbjct: 1601 GDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEK 1660
Query: 1340 QISEYAK-VVSESEN---NTLLLLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNP 1395
QI E+ K V +ES N+ L KAPK LGD+VESIAGAI +D+ WK F P
Sbjct: 1661 QIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQP 1720
Query: 1396 LLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKESTEHVELSVQLPNALLVQKG 1455
LL P+VTP+ L + P R+L C ++ K +T VE+ + + + V
Sbjct: 1721 LLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTAT--VEVFI---DGVQVGVA 1775
Query: 1456 KGPNKRIAKE 1465
+ P K++A++
Sbjct: 1776 QNPQKKMAQK 1785
>AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 |
chr3:7119371-7120895 REVERSE LENGTH=391
Length = 391
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 14/250 (5%)
Query: 1232 VPKSNEITSLE---NKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLI 1288
VP S+E+ S+E L Y+FS K LL EAITH S + + YERLEF+GDS + + I
Sbjct: 51 VPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCTDFPS---YERLEFIGDSAIGLAI 107
Query: 1289 TWHLYQSHTDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVV 1348
+ +LY ++ + +L+ LR+A+V+ E A+V++ ++ E+++ V
Sbjct: 108 SNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAV 167
Query: 1349 SESENNTLLLLG-IKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLE 1407
+ ++ ++ G +KAPK L DL ES+AGA+ +D L +W F LL PIVT D+L+
Sbjct: 168 GKEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQ 227
Query: 1408 LIPS--RKLSRLCDSLGYFMKIKEKYDNKESTEHVELSVQLPNALLVQKGKGPNKRIAKE 1465
P L +LC + IK D +V ++V + L+ G+ NK IA+
Sbjct: 228 KQPQPVSMLFKLCHKHKKRIDIKNWKDG-----NVSIAVIYLDDELLASGRAENKDIARL 282
Query: 1466 QAAFHLLNDL 1475
AA L L
Sbjct: 283 IAAKEALRKL 292
>AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 |
chr5:18260441-18264346 FORWARD LENGTH=957
Length = 957
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 1236 NEITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQS 1295
N + ++E L Y F K LL EAIT S ++RLEF GDS+L+V T ++ +
Sbjct: 2 NSVEAVEKILNYSFVNKTLLKEAITQKSP-------LFDRLEFFGDSILEVAFTNYICHT 54
Query: 1296 HTDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNT 1355
+ +++ EL +LR+A+V+NE FA++AV N ++ +A+ V + ++
Sbjct: 55 YPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPV 114
Query: 1356 LLLLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLEL---IPSR 1412
+KAPK L D +ESIA + ID + +W+ F LL PI TPD+L L +P
Sbjct: 115 PYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFL 174
Query: 1413 KLSRLCDSLG 1422
L RL D G
Sbjct: 175 TLFRLADKHG 184
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 1238 ITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHT 1297
+ ++E L Y F K LL E +TH N ++ L F+G+S L + T HLY ++
Sbjct: 415 VEAVEKILNYSFVNKTLLKELLTH------NNSPLFQGLMFVGESALSLAFTKHLYLTYP 468
Query: 1298 DIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSESENNTLL 1357
+ +L+ LR A+ ++ +A VAV+K +++ +++ + ++ +
Sbjct: 469 MLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDDPYRV 528
Query: 1358 LLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLEL---IPSRKL 1414
+KAPK L +L+ +AGA+ ID K ++ + + F LL PI T D+L + P L
Sbjct: 529 ---VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLML 585
Query: 1415 SRLCDSLG 1422
RL D G
Sbjct: 586 FRLADKHG 593
>AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 |
chr4:8821759-8822991 FORWARD LENGTH=264
Length = 264
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 9/208 (4%)
Query: 1237 EITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSH 1296
EI SLE L Y+F K LLL+A T S + YE LE LGDS+L++ I + + +
Sbjct: 28 EIESLEKILNYKFKDKSLLLKAFTDASYVD-DKSESYELLELLGDSILNMGIIYDFIKLY 86
Query: 1297 TDIREGELTELRSASVNNENFAQVAVRKNXXXXXXXXXXXXXNQISEYAKVVSES--ENN 1354
G LT+LR+ +V+ E A+VAV QI E+ + + + +N
Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146
Query: 1355 TLLLLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKL 1414
LL K PK L D+VES GAI +D S + VWK PLL PI+ D ++ P +L
Sbjct: 147 GLL----KVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHPMTEL 201
Query: 1415 SRLCDSLGYFMKIKEKY-DNKESTEHVE 1441
+ +C + K+ + +N+ H+E
Sbjct: 202 NEMCQKRNLKLTSKDTWEENQTYCFHIE 229
>AT1G35530.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089994-13097078 FORWARD LENGTH=1390
Length = 1390
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 127/532 (23%), Positives = 207/532 (38%), Gaps = 86/532 (16%)
Query: 25 DDDSPTFINIDP--------------RRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLI 70
D+D+ + IDP R YQ + + A NT+ L TG GKTLIA +++
Sbjct: 90 DNDNSPLVGIDPEAAKTWIYPGFVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVM 149
Query: 71 KDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVE---EYYGRGVDEWNLKTW 127
+ + GK I+ AP LV Q + G E + G+ W
Sbjct: 150 YNYFRWF-PQGK---IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDLTGQTCPSKRAFLW 205
Query: 128 EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRAN 187
+ + V +TPQ+L + + +VIDE H A GN+ Y +++E
Sbjct: 206 KSK----RVFFVTPQVLEKDIQSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPI 261
Query: 188 EKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYT---VEDR----TEMDVCNP 240
+ I +TA+P K + QIS LE +S V DR E+ +
Sbjct: 262 QL-RILALTATPGSKTQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQD 320
Query: 241 SAKESCRFYDQARFPALSLK-------PKIEALW----------LKSDALLSEFQSNYKD 283
+ S R + R A+ LK I+ L + L N+ D
Sbjct: 321 ADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLPHVNHGD 380
Query: 284 VDSKFKTLHQRMSNDLAKVLYCLEDLGLLCAYEAV--KICHAKFSKIEGECEVYRKGYRQ 341
V+S F L L + L G+ AYE + K+ F+++ + E R
Sbjct: 381 VESCFAALIT-----LYHIRKLLSSHGIRPAYEMLEEKLKEGPFARLMSKNE----DIRM 431
Query: 342 CITILEDVIQIIEESLNLADKMILDVESDYSNAVDKGYISPKLHELIKIFHTF-GESNEV 400
+++ + S L+ +L++ D+ D PK +I IF F G ++
Sbjct: 432 TKLLMQQRLSHGAPSPKLSK--MLEILVDHFKVKD-----PKTSRVI-IFSNFRGSVRDI 483
Query: 401 LCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKV 460
+ A I VK I + L G + Q+ +L+ FR+G
Sbjct: 484 MN--------ALSNIGDMVKATEFIGQSSGKTLKGQSQKI-------QQAVLEKFRAGGF 528
Query: 461 NLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS-RQANSQFILML 511
N++ T + EEG+++ VI FD + +Q GR+ R+ N + +L+L
Sbjct: 529 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRPLLVL 580
>AT1G35530.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:13089994-13097078 FORWARD LENGTH=1324
Length = 1324
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 203/528 (38%), Gaps = 85/528 (16%)
Query: 25 DDDSPTFINIDP--------------RRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLI 70
D+D+ + IDP R YQ + + A NT+ L TG GKTLIA +++
Sbjct: 90 DNDNSPLVGIDPEAAKTWIYPGFVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVM 149
Query: 71 KDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVE---EYYGRGVDEWNLKTW 127
+ + GK I+ AP LV Q + G E + G+ W
Sbjct: 150 YNYFRWF-PQGK---IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDLTGQTCPSKRAFLW 205
Query: 128 EKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRAN 187
+ + V +TPQ+L + + +VIDE H A GN+ Y +++E
Sbjct: 206 KSK----RVFFVTPQVLEKDIQSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPI 261
Query: 188 EKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYT---VEDR----TEMDVCNP 240
+ I +TA+P K + QIS LE +S V DR E+ +
Sbjct: 262 QL-RILALTATPGSKTQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQD 320
Query: 241 SAKESCRFYDQARFPALSLK-------PKIEALW----------LKSDALLSEFQSNYKD 283
+ S R + R A+ LK I+ L + L N+ D
Sbjct: 321 ADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLPHVNHGD 380
Query: 284 VDSKFKTLHQRMSNDLAKVLYCLEDLGLLCAYEAV--KICHAKFSKIEGECEVYRKGYRQ 341
V+S F L L + L G+ AYE + K+ F+++ + E R
Sbjct: 381 VESCFAALIT-----LYHIRKLLSSHGIRPAYEMLEEKLKEGPFARLMSKNE----DIRM 431
Query: 342 CITILEDVIQIIEESLNLADKMILDVESDYSNAVDKGYISPKLHELIKIFHTF-GESNEV 400
+++ + S L+ +L++ D+ D PK +I IF F G ++
Sbjct: 432 TKLLMQQRLSHGAPSPKLSK--MLEILVDHFKVKD-----PKTSRVI-IFSNFRGSVRDI 483
Query: 401 LCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKV 460
+ A I VK I + L G + Q+ +L+ FR+G
Sbjct: 484 MN--------ALSNIGDMVKATEFIGQSSGKTLKGQSQKI-------QQAVLEKFRAGGF 528
Query: 461 NLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFI 508
N++ T + EEG+++ VI FD + +Q GR+ + N+ I
Sbjct: 529 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRI 576
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 30/215 (13%)
Query: 306 LEDLGLLCAYEAVKICHAKFSKIEGE----CEVYRKGYRQCITILEDVIQIIEESLNLAD 361
L+DL +L EA ++ F+ E C R+ T+ E+V ++++ SLN
Sbjct: 311 LDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKP- 369
Query: 362 KMILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKN 421
L + +D S G E+++I T + E + L R +KVI
Sbjct: 370 ---LRLSADPSARRPPGLT----EEVVRIRRTREANQEAVLLSLCTRTFKSKVI--IFSG 420
Query: 422 VPQISH----------LTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEE 471
Q +H L + L GN T L + L+ FR +V+ L TDV
Sbjct: 421 TKQAAHRLKILFGLAGLKAAELHGNLTQAQRL------DSLELFRKQEVDFLIATDVAAR 474
Query: 472 GINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQ 506
G+++ VI + P+ + SYV GR+ +A +
Sbjct: 475 GLDIIGVQTVINYACPREIDSYVHRVGRTARAGRE 509
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 381 SPKLHELIKIFHTFGESN--EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHT 438
S K L+ + H E+ + L L+FVE A ++ ++ ++ + + G+ T
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLC----MNEFPATSIHGDRT 443
Query: 439 SVDALAPTRQKEI-LDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSR 497
+++E+ L SF++G+ +L TDV G+++P+ + V+ FDLP + YV
Sbjct: 444 Q-------QEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 498 GRSRQANSQFI 508
GR+ +A I
Sbjct: 497 GRTGRAGKSGI 507
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 381 SPKLHELIKIFHTFGESN--EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHT 438
S K L+ + H E+ + L L+FVE A ++ ++ ++ + + G+ T
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLC----MNEFPATSIHGDRT 443
Query: 439 SVDALAPTRQKEI-LDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSR 497
+++E+ L SF++G+ +L TDV G+++P+ + V+ FDLP + YV
Sbjct: 444 Q-------QEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 498 GRSRQANSQFI 508
GR+ +A I
Sbjct: 497 GRTGRAGKSGI 507
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 381 SPKLHELIKIFHTFGESN--EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHT 438
S K L+ + H E+ + L L+FVE A ++ ++ ++ + + G+ T
Sbjct: 388 SDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLC----MNEFPATSIHGDRT 443
Query: 439 SVDALAPTRQKEI-LDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSR 497
+++E+ L SF++G+ +L TDV G+++P+ + V+ FDLP + YV
Sbjct: 444 Q-------QEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 498 GRSRQANSQFI 508
GR+ +A I
Sbjct: 497 GRTGRAGKSGI 507
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 447 RQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQ 506
+++ L++FR GK +L TDV G+++PN VI ++LP ++V GR+ +A +
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 507 FILMLERGNLKQRNQ---------HFEII---------RTERFMTDAAINKVHESNLRAF 548
+L + ++R HFE I + A +N VH +++ F
Sbjct: 448 GSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFF 507
Query: 549 TVGNTNAY 556
+ Y
Sbjct: 508 SATAQKLY 515
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 447 RQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQ 506
+++ L++FR GK +L TDV G+++PN VI ++LP ++V GR+ +A +
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 507 FILMLERGNLKQRNQ---------HFEII---------RTERFMTDAAINKVHESNLRAF 548
+L + ++R HFE I + A +N VH +++ F
Sbjct: 448 GSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFF 507
Query: 549 TVGNTNAY 556
+ Y
Sbjct: 508 SATAQKLY 515
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 269 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 326
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 327 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 371
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 267 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 325 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 262 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 319
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 320 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 364
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 430 VSYLTGNHTSVDAL----APTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFD 485
VS N + +AL + +++ L++FR GK +L TDV G+++PN VI ++
Sbjct: 274 VSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYE 333
Query: 486 LPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQ---------HFEII---------R 527
LP ++V GR+ +A + +L + ++R HFE I
Sbjct: 334 LPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLE 393
Query: 528 TERFMTDAAINKVHESNLRAFTVGNTNAY 556
+ A +N VH +++ F+ Y
Sbjct: 394 SSADQVVATLNGVHPDSIKFFSATAQKLY 422
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 267 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 325 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 257 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 314
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 315 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 359
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 262 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 319
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 320 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 364
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 399 EVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKE---ILDSF 455
E LC ++ I VI FV ++ LT + +HT Q I+ F
Sbjct: 267 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324
Query: 456 RSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRS 500
RSG +L TTD+L GI+V S VI FDLP +Y+ GRS
Sbjct: 325 RSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369