Miyakogusa Predicted Gene

Lj1g3v1686780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1686780.1 tr|I1NVI7|I1NVI7_ORYGL DNA-directed RNA
polymerase OS=Oryza glaberrima PE=3 SV=1,46.02,4e-19,no
description,Copper amine oxidase, N2/N3-terminal; seg,NULL;
DUF3223,Protein of unknown function
D,NODE_20929_length_1204_cov_21.093023.path2.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 | 20...   249   1e-66
Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 | 20...   148   3e-36
Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 | 20...   148   3e-36
Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 | 20...   145   3e-35
Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 | 20...   130   8e-31
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...   111   6e-25
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    67   1e-11

>Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 |
           20130731
          Length = 202

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 141/179 (78%), Gaps = 2/179 (1%)

Query: 21  TARAVVARHRLWCSAAT-NSPSNEAEEKAIPSTTFNLRSDKYQANHPRWEDD-PDYRKWR 78
           T R V ARHRLWCSAA  N PS +  +K    +    R D + +++ R ED+  DYRKW+
Sbjct: 24  TVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLNRRDVFPSSNFRLEDEESDYRKWK 83

Query: 79  VKEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLE 138
            KE+EI  DIEPI++L K+ILHS KYMDG  L++EDEK +VEKLLAYHPHSEDKIG GLE
Sbjct: 84  DKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLE 143

Query: 139 SIMVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKRGSG 197
           SIMVDRHP FRHSRCLFVVRTDGGWIDFSYQKCLR+YI+ KYP HAERFIREH KRGS 
Sbjct: 144 SIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPAHAERFIREHLKRGSS 202


>Medtr3g102270.4 | DCL protein | HC | chr3:47131265-47133258 |
           20130731
          Length = 199

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 5/145 (3%)

Query: 21  TARAVVARHRLWCSAAT-NSPSNEAEEKAIP-STTFNLRSDKYQANHPRWEDD-PDYRKW 77
           T R V ARHRLWCSAA  N PS +  +K    S T N R D + +++ R ED+  DYRKW
Sbjct: 24  TVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLN-RRDVFPSSNFRLEDEESDYRKW 82

Query: 78  RVKEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGL 137
           + KE+EI  DIEPI++L K+ILHS KYMDG  L++EDEK +VEKLLAYHPHSEDKIG GL
Sbjct: 83  KDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGL 142

Query: 138 ESIMVDRHPHFRHSRCLFVVRTDGG 162
           ESIM+D + +   +RC     +D G
Sbjct: 143 ESIMIDSN-YEAQTRCQTPYISDTG 166


>Medtr3g102270.2 | DCL protein | HC | chr3:47131265-47137884 |
           20130731
          Length = 199

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 5/145 (3%)

Query: 21  TARAVVARHRLWCSAAT-NSPSNEAEEKAIP-STTFNLRSDKYQANHPRWEDD-PDYRKW 77
           T R V ARHRLWCSAA  N PS +  +K    S T N R D + +++ R ED+  DYRKW
Sbjct: 24  TVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLN-RRDVFPSSNFRLEDEESDYRKW 82

Query: 78  RVKEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGL 137
           + KE+EI  DIEPI++L K+ILHS KYMDG  L++EDEK +VEKLLAYHPHSEDKIG GL
Sbjct: 83  KDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGL 142

Query: 138 ESIMVDRHPHFRHSRCLFVVRTDGG 162
           ESIM+D + +   +RC     +D G
Sbjct: 143 ESIMIDSN-YEAQTRCQTPYISDTG 166


>Medtr3g102270.3 | DCL protein | HC | chr3:47131265-47131968 |
           20130731
          Length = 167

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/128 (60%), Positives = 94/128 (73%), Gaps = 4/128 (3%)

Query: 21  TARAVVARHRLWCSAAT-NSPSNEAEEKAIP-STTFNLRSDKYQANHPRWEDD-PDYRKW 77
           T R V ARHRLWCSAA  N PS +  +K    S T N R D + +++ R ED+  DYRKW
Sbjct: 24  TVRTVTARHRLWCSAAAINPPSEKPNDKPNSVSNTLN-RRDVFPSSNFRLEDEESDYRKW 82

Query: 78  RVKEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGL 137
           + KE+EI  DIEPI++L K+ILHS KYMDG  L++EDEK +VEKLLAYHPHSEDKIG GL
Sbjct: 83  KDKEDEIFNDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGL 142

Query: 138 ESIMVDRH 145
           ESIMV  +
Sbjct: 143 ESIMVSTY 150


>Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 |
           20130731
          Length = 224

 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 84/121 (69%)

Query: 76  KWRVKEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGS 135
           KW   E++IL+D  P++  ++ ILHS +Y +G RLS E EK IVEKLL +HP S+ KIG 
Sbjct: 101 KWVDWEDQILEDTVPLVGFVRTILHSGQYENGDRLSPEHEKTIVEKLLPFHPESQKKIGC 160

Query: 136 GLESIMVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKRG 195
           G++ I V  HP+F  SRC+F+VR DG  +DFSY KC++  IR  YP++A+ FI  HF+  
Sbjct: 161 GIDYITVGYHPNFDRSRCMFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRNR 220

Query: 196 S 196
           S
Sbjct: 221 S 221


>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
            chr8:14459096-14475944 | 20130731
          Length = 2010

 Score =  111 bits (277), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 79/115 (68%)

Query: 80   KEEEILKDIEPIMLLMKDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLES 139
            +E++I+KDIEPI+  ++ I+  + Y DG  L+ ED+K ++E +  +HP  E K+G G++ 
Sbjct: 1821 EEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDH 1880

Query: 140  IMVDRHPHFRHSRCLFVVRTDGGWIDFSYQKCLRKYIRDKYPIHAERFIREHFKR 194
            +MV +H +F+ SRCL+VV  DG   DFSY+KCL   +R KYP  AE F  ++F++
Sbjct: 1881 VMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRK 1935


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 13/137 (9%)

Query: 38   NSPSNEAEEKAIPSTTFNLRSDKYQANHPRWEDDPDYRKWR--VKEEEILKDIEPIMLLM 95
            N P +        S+ F  ++  Y    P+        +W+  ++      DI+ +    
Sbjct: 1320 NIPQSRKYSSGKCSSDFRSKNGGYTPKEPK--------QWKSVLRNFMTANDIQRLTFDA 1371

Query: 96   KDILHSRKYMDGQRLSVEDEKDIVEKLLAYHPHSEDKIGSGLESIMVDRHPHFRHSRCLF 155
            + IL+  KY   + LS E +K  + K+L +HP  ++K GSG ++I V  HP F  SRC F
Sbjct: 1372 RVILN--KYQIDETLS-ETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFF 1428

Query: 156  VVRTDGGWIDFSYQKCL 172
            ++R DG   DFSY+KC+
Sbjct: 1429 IIRKDGSVEDFSYRKCI 1445