Miyakogusa Predicted Gene

Lj1g3v1582540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1582540.1 Non Chatacterized Hit- tr|K4D9A0|K4D9A0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,75.44,8e-17,RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN,NULL; no
description,Rho GTPase-activating protein domain; Rho,CUFF.27537.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein (Rho...   178   6e-46
AT5G12150.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   178   6e-46
AT5G12150.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   178   6e-46
AT5G19390.3 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   164   1e-41
AT5G19390.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   164   1e-41
AT5G19390.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   164   1e-41
AT5G19390.4 | Symbols:  | Rho GTPase activation protein (RhoGAP)...   164   1e-41

>AT4G24580.1 | Symbols: REN1 | Rho GTPase activation protein
           (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE
           LENGTH=933
          Length = 933

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 98/118 (83%), Gaps = 1/118 (0%)

Query: 1   MEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEE 60
           M QNGI RND  D   + +D+ KD  P KSTV+GRP+LLALEDVDG PSFLEKAL+F+E 
Sbjct: 176 MGQNGIFRNDHADPA-VGVDEKKDETPTKSTVLGRPVLLALEDVDGAPSFLEKALRFVEN 234

Query: 61  HGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPVP 118
           HG  +EGILRQAADVDDVE R+REYE+GK +FSP+EDAH+I DC+K+ +RELPSSPVP
Sbjct: 235 HGVRIEGILRQAADVDDVEHRIREYEKGKNEFSPEEDAHIIADCLKYFLRELPSSPVP 292


>AT5G12150.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:3924632-3930100 REVERSE LENGTH=772
          Length = 772

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 102/116 (87%)

Query: 3   QNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEEHG 62
           QNGI R + N++I+ S +  +D+ P KS+V+GRPILLALE++DG+PSFLEKAL+F+E +G
Sbjct: 136 QNGIFRTEANNTIEASFNSWRDQRPLKSSVVGRPILLALEEIDGSPSFLEKALQFLETYG 195

Query: 63  ASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPVP 118
             VEGILRQ+ADV++VERRV+EYEQGK +FSP+ED HV+GDCVKHV+R+LPSSPVP
Sbjct: 196 TKVEGILRQSADVEEVERRVQEYEQGKTEFSPEEDPHVVGDCVKHVLRQLPSSPVP 251


>AT5G12150.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:3924393-3930100 REVERSE LENGTH=827
          Length = 827

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 102/116 (87%)

Query: 3   QNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEEHG 62
           QNGI R + N++I+ S +  +D+ P KS+V+GRPILLALE++DG+PSFLEKAL+F+E +G
Sbjct: 136 QNGIFRTEANNTIEASFNSWRDQRPLKSSVVGRPILLALEEIDGSPSFLEKALQFLETYG 195

Query: 63  ASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPVP 118
             VEGILRQ+ADV++VERRV+EYEQGK +FSP+ED HV+GDCVKHV+R+LPSSPVP
Sbjct: 196 TKVEGILRQSADVEEVERRVQEYEQGKTEFSPEEDPHVVGDCVKHVLRQLPSSPVP 251


>AT5G19390.3 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538069 FORWARD LENGTH=822
          Length = 822

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 99/117 (84%), Gaps = 5/117 (4%)

Query: 1   MEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEE 60
           M QNGI R + N++I+      +++ P KS V+GRPILLALED+DG+PSFLEKAL+FIE+
Sbjct: 134 MGQNGIFRAETNEAIEG-----REKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEK 188

Query: 61  HGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPV 117
           +G  +EGILRQ+ADV++VERRV+EYEQGK +F+ DED HV+GDC+KHV+RELPSSPV
Sbjct: 189 YGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPV 245


>AT5G19390.2 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
          Length = 870

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 99/117 (84%), Gaps = 5/117 (4%)

Query: 1   MEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEE 60
           M QNGI R + N++I+      +++ P KS V+GRPILLALED+DG+PSFLEKAL+FIE+
Sbjct: 134 MGQNGIFRAETNEAIEG-----REKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEK 188

Query: 61  HGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPV 117
           +G  +EGILRQ+ADV++VERRV+EYEQGK +F+ DED HV+GDC+KHV+RELPSSPV
Sbjct: 189 YGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPV 245


>AT5G19390.1 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
          Length = 870

 Score =  164 bits (415), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 99/117 (84%), Gaps = 5/117 (4%)

Query: 1   MEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEE 60
           M QNGI R + N++I+      +++ P KS V+GRPILLALED+DG+PSFLEKAL+FIE+
Sbjct: 134 MGQNGIFRAETNEAIEG-----REKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEK 188

Query: 61  HGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPV 117
           +G  +EGILRQ+ADV++VERRV+EYEQGK +F+ DED HV+GDC+KHV+RELPSSPV
Sbjct: 189 YGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPV 245


>AT5G19390.4 | Symbols:  | Rho GTPase activation protein (RhoGAP)
           with PH domain | chr5:6531906-6537143 FORWARD LENGTH=714
          Length = 714

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 99/117 (84%), Gaps = 5/117 (4%)

Query: 1   MEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEE 60
           M QNGI R + N++I+      +++ P KS V+GRPILLALED+DG+PSFLEKAL+FIE+
Sbjct: 134 MGQNGIFRAETNEAIEG-----REKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEK 188

Query: 61  HGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPV 117
           +G  +EGILRQ+ADV++VERRV+EYEQGK +F+ DED HV+GDC+KHV+RELPSSPV
Sbjct: 189 YGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPV 245