Miyakogusa Predicted Gene

Lj1g3v1561420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1561420.1 Non Characterized Hit- tr|G0UYX8|G0UYX8_TRYCI
Putative uncharacterized protein TCIL3000_10_13810 OS=,26.11,0.0001,WD
AND TETRATRICOPEPTIDE REPEAT PROTEIN 1,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NULL; n,CUFF.27526.1
         (201 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g100690.1 | transducin/WD-like repeat-protein | HC | chr3:...   234   5e-62

>Medtr3g100690.1 | transducin/WD-like repeat-protein | HC |
           chr3:46335782-46323405 | 20130731
          Length = 759

 Score =  234 bits (596), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 116/147 (78%), Positives = 123/147 (83%), Gaps = 6/147 (4%)

Query: 2   PYHGIEACNEVMNGYSHIIVPALKHECLCMRAALLLKRKWKNDAHMAIRDCYAARKIDTS 61
           PY+GIEACNEV+ GY+HII PALK ECLC RAALLLKRKWKNDAHMAIRDC+AARK D S
Sbjct: 379 PYYGIEACNEVLIGYNHIIGPALKQECLCTRAALLLKRKWKNDAHMAIRDCHAARKFDKS 438

Query: 62  SYKALYYMSEALSQLGRHKEALDFAVASHSLAPSKSEVAERVENVKKDIALAEAEKNRKT 121
           +YK LYYMSEALSQLG+HKEALDFAVASHSLAPSKSEVAERVEN KKDI LAE EKN KT
Sbjct: 439 AYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAERVENAKKDIVLAETEKNSKT 498

Query: 122 XXXXXXXXXXXXXILSLSDILYRSEAN 148
                        +LSLSDILYRSEAN
Sbjct: 499 ------NNGRGGRMLSLSDILYRSEAN 519