Miyakogusa Predicted Gene

Lj1g3v1561420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1561420.1 Non Chatacterized Hit- tr|G0UYX8|G0UYX8_TRYCI
Putative uncharacterized protein TCIL3000_10_13810 OS=,26.11,0.0001,WD
AND TETRATRICOPEPTIDE REPEAT PROTEIN 1,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NULL; n,CUFF.27526.1
         (201 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10940.2 | Symbols:  | transducin family protein / WD-40 repe...   177   5e-45
AT5G10940.1 | Symbols:  | transducin family protein / WD-40 repe...   177   5e-45

>AT5G10940.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:3448890-3454127 REVERSE LENGTH=754
          Length = 754

 Score =  177 bits (449), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/146 (58%), Positives = 110/146 (75%), Gaps = 7/146 (4%)

Query: 3   YHGIEACNEVMNGYSHIIVPALKHECLCMRAALLLKRKWKNDAHMAIRDCYAARKIDTSS 62
           ++ IEA NEV++ +S+ I  AL+HECLC RAALLLKRKWKNDAHMA+RDC+ AR+ID SS
Sbjct: 379 FYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASS 438

Query: 63  YKALYYMSEALSQLGRHKEALDFAVASHSLAPSKSEVAERVENVKKDIALAEAEKNRKTX 122
           +KA YYMSEAL QLG+ KEALDFA A+  + PS +++  +VE++K+D+  A AEKN +T 
Sbjct: 439 FKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEET- 497

Query: 123 XXXXXXXXXXXXILSLSDILYRSEAN 148
                       +LSLSDILYRSEAN
Sbjct: 498 ------GAGTTRVLSLSDILYRSEAN 517


>AT5G10940.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:3448890-3454127 REVERSE LENGTH=757
          Length = 757

 Score =  177 bits (449), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/146 (58%), Positives = 110/146 (75%), Gaps = 7/146 (4%)

Query: 3   YHGIEACNEVMNGYSHIIVPALKHECLCMRAALLLKRKWKNDAHMAIRDCYAARKIDTSS 62
           ++ IEA NEV++ +S+ I  AL+HECLC RAALLLKRKWKNDAHMA+RDC+ AR+ID SS
Sbjct: 382 FYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASS 441

Query: 63  YKALYYMSEALSQLGRHKEALDFAVASHSLAPSKSEVAERVENVKKDIALAEAEKNRKTX 122
           +KA YYMSEAL QLG+ KEALDFA A+  + PS +++  +VE++K+D+  A AEKN +T 
Sbjct: 442 FKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAKVESIKRDLQAAGAEKNEET- 500

Query: 123 XXXXXXXXXXXXILSLSDILYRSEAN 148
                       +LSLSDILYRSEAN
Sbjct: 501 ------GAGTTRVLSLSDILYRSEAN 520