Miyakogusa Predicted Gene

Lj1g3v1561420.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1561420.1 Non Chatacterized Hit- tr|G0UYX8|G0UYX8_TRYCI
Putative uncharacterized protein TCIL3000_10_13810 OS=,26.11,0.0001,WD
AND TETRATRICOPEPTIDE REPEAT PROTEIN 1,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NULL; n,CUFF.27526.1
         (606 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO012854 similar to UniRef100_A7NUQ1 Cluster: Chromosom...   864   0.0  

>gnl|LJGI|GO012854 similar to UniRef100_A7NUQ1 Cluster: Chromosome chr18 scaffold_1,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (23%)
          Length = 667

 Score =  864 bits (436), Expect = 0.0
 Identities = 480/488 (98%), Gaps = 5/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccctatcatggaattgaggcatgcaatgaagttatgaatggctacagtcatattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgccctatcatggaattgaggcatgcaatgaagttatgaatggctacagtcatattatt 244

                                                                       
Query: 61  gtgcctgcactaaaacatgaatgcttgtgtatgcgtgctgcactattgcttaagaggaag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 245 gtgcctgcactaaaacatgaatgcttgtgtatgcgtgctgcagtattgcttaagaggaag 304

                                                                       
Query: 121 tggaaaaatgatgctcatatggctataagagactgctatgctgccaggaaaattgatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggaaaaatgatgctcatatggctataagagactgctatgctgccaggaaaattgatact 364

                                                                       
Query: 181 tcctcctataaagcactttattatatgtcagaagcattgtcacagttgggtagacacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcctcctataaagcactttattatatgtcagaagcattgtcacagttgggtagacacaaa 424

                                                                       
Query: 241 gaagctttagattttgctgttgcttcccactctttggccccatccaaatctgaagttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaagctttagattttgctgttgcttcccactctttggccccatccaaatctgaagttgca 484

                                                                       
Query: 301 gaaagagttgagaatgtgaagaaggatattgctttagctgaagctgagaaaaatcgtaag 360
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 485 gaaagagttgagaatgtgaagaaagatattgctttagctgaagctgag-aaaatcgtaag 543

                                                                       
Query: 361 acggatgatggagcatcaaggtctgaccgtcgaggtggaaggatattatcattaagtgac 420
           || |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 544 acagatgatggagcatcaa-gtctgaccgtcgaggtggaa-gatattatcattaagtgac 601

                                                                       
Query: 421 atactctatcgttcagaggctaatagtgatggttctcaagacgatcaaagatcagagagg 480
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 602 atactctatcgttcaga-gctaatagtgatggttctc-agacgatcaaagatcagagagg 659

                   
Query: 481 gatgactc 488
           ||||||||
Sbjct: 660 gatgactc 667