Miyakogusa Predicted Gene
- Lj1g3v1419290.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1419290.2 Non Chatacterized Hit- tr|I1ISW5|I1ISW5_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,44.36,9e-19,DCD,Development/cell death domain;
Dev_Cell_Death,Development/cell death domain; no
description,Deve,CUFF.27317.2
(322 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domai... 159 2e-39
AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domai... 159 2e-39
AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domai... 159 2e-39
AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domai... 156 1e-38
AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domai... 145 3e-35
AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domai... 106 2e-23
AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domai... 106 2e-23
AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domai... 106 2e-23
AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domai... 95 5e-20
AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domai... 94 1e-19
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose ... 80 2e-15
AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domai... 76 3e-14
AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domai... 67 2e-11
>AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863741 REVERSE LENGTH=742
Length = 742
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 1 MENEENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGI 60
+++ E LPG+IFMCN TK +CYR+RVFG+P G KDVV +I+ G LFL+D + +LLYG+
Sbjct: 59 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 118
Query: 61 YRADSTGRLNIEPFAFGRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELS 120
Y A GRL+IEP AF K+PAQV F I +C PL EN FK AI +NY+ +KF ELS
Sbjct: 119 YEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYK--GSKFKQELS 176
Query: 121 SGQVRNLLELFR 132
QV +LL LFR
Sbjct: 177 PHQVMSLLSLFR 188
>AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 1 MENEENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGI 60
+++ E LPG+IFMCN TK +CYR+RVFG+P G KDVV +I+ G LFL+D + +LLYG+
Sbjct: 55 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 114
Query: 61 YRADSTGRLNIEPFAFGRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELS 120
Y A GRL+IEP AF K+PAQV F I +C PL EN FK AI +NY+ +KF ELS
Sbjct: 115 YEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYK--GSKFKQELS 172
Query: 121 SGQVRNLLELFR 132
QV +LL LFR
Sbjct: 173 PHQVMSLLSLFR 184
>AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 1 MENEENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGI 60
+++ E LPG+IFMCN TK +CYR+RVFG+P G KDVV +I+ G LFL+D + +LLYG+
Sbjct: 55 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 114
Query: 61 YRADSTGRLNIEPFAFGRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELS 120
Y A GRL+IEP AF K+PAQV F I +C PL EN FK AI +NY+ +KF ELS
Sbjct: 115 YEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYK--GSKFKQELS 172
Query: 121 SGQVRNLLELFR 132
QV +LL LFR
Sbjct: 173 PHQVMSLLSLFR 184
>AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24855908-24863729 REVERSE LENGTH=1346
Length = 1346
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 1 MENEENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGI 60
+++ E LPG+IFMCN TK +CYR+RVFG+P G KDVV +I+ G LFL+D + +LLYG+
Sbjct: 55 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 114
Query: 61 YRADSTGRLNIEPFAFGRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELS 120
Y A GRL+IEP AF K+PAQV F I +C PL EN FK AI +NY+ +KF ELS
Sbjct: 115 YEATVGGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENYK--GSKFKQELS 172
Query: 121 SGQVRNLLELFR 132
QV +LL LFR
Sbjct: 173 PHQVMSLLSLFR 184
>AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:13959685-13961989 FORWARD LENGTH=691
Length = 691
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 6 NLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADS 65
+ G IFMCN T+P+C+RF V G+ RKD V I+ G LFL+D D+KLLYGI+ A S
Sbjct: 318 KIGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIFEASS 377
Query: 66 TGRLNIEPFAFGRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELSSGQVR 125
G + +E AFG FPAQV+F ++ DC PL E+ FK AII+NY NKF EL+ QV
Sbjct: 378 AGGMKLERNAFGGSFPAQVRFKVFSDCIPLAESQFKKAIIENYN-NKNKFKTELTHKQVF 436
Query: 126 NLLELFRPLHV 136
L +LFRP +
Sbjct: 437 KLKKLFRPAAI 447
>AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 9 GFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADSTGR 68
G IFM N T+ EC ++FGLP G V +++ G LFLF+ + + L+G+++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 69 LNIEPFAF---GRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELSSGQVR 125
+NIEP AF G++FPAQVKF C PL E+ F +AI +NY + KFN LS QV+
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPT-KFNFGLSKAQVQ 141
Query: 126 NLLELFRPLHV-----LSTAPPRPV 145
LL+LF V TA P+P+
Sbjct: 142 RLLKLFSMKKVERSRLRETAAPKPL 166
>AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 9 GFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADSTGR 68
G IFM N T+ EC ++FGLP G V +++ G LFLF+ + + L+G+++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 69 LNIEPFAF---GRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELSSGQVR 125
+NIEP AF G++FPAQVKF C PL E+ F +AI +NY + KFN LS QV+
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPT-KFNFGLSKAQVQ 141
Query: 126 NLLELFRPLHV-----LSTAPPRPV 145
LL+LF V TA P+P+
Sbjct: 142 RLLKLFSMKKVERSRLRETAAPKPL 166
>AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 9 GFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADSTGR 68
G IFM N T+ EC ++FGLP G V +++ G LFLF+ + + L+G+++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 69 LNIEPFAF---GRKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELSSGQVR 125
+NIEP AF G++FPAQVKF C PL E+ F +AI +NY + KFN LS QV+
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPT-KFNFGLSKAQVQ 141
Query: 126 NLLELFRPLHV-----LSTAPPRPV 145
LL+LF V TA P+P+
Sbjct: 142 RLLKLFSMKKVERSRLRETAAPKPL 166
>AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3448442-3450283 FORWARD LENGTH=488
Length = 488
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 131/321 (40%), Gaps = 43/321 (13%)
Query: 6 NLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADS 65
+L G IF C T ECY +FGLPA + NI G LFLF+ + L+GI+ A S
Sbjct: 10 DLCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAAS 69
Query: 66 TGRLNIEPFAFG------RKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPEL 119
G+LNI+ A+ +PAQVK + C PLPE F I++NY F EL
Sbjct: 70 EGKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYN-DDKMFWFEL 128
Query: 120 SSGQVRNLLELFRP--------LHVLSTAPPR-PV----LNEIYSPSTLPLPPMNNVFHQ 166
GQ LL LF+P + + PPR P+ L +I + +N+F
Sbjct: 129 DRGQTNKLLRLFKPSPSVRPPTISRDAVPPPRKPIPASSLAQIGDSGATRIDKWSNLF-- 186
Query: 167 TSRSSFEDSYFSRMSPNQAPRQLNYRHVNELAEPTGWAYPVNKLIPNSAAEHSVISQAPR 226
+SS E + + R VN L + W N N+ + S +
Sbjct: 187 --KSSDESTKNKEKDSKEGALGAGSRLVN-LGKTKEWETASN----NADERRTQPSVSQS 239
Query: 227 NQLHAEAVYAVTPEGTYAARTATSYTLSHPQYTQQGILKPQ------PEFHTQS------ 274
++ A+ +T T + S T +G+ P P H S
Sbjct: 240 GTSYSSALSHMTASSTQEKK--NSITNEGSSQACKGVENPWTSAARVPPIHQDSGGFRNA 297
Query: 275 LHDSQHAHLNVLHPQHDLHPS 295
+ + +N H Q +LHP+
Sbjct: 298 AMEGEDVKVNAYHHQQNLHPT 318
>AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3447847-3450283 FORWARD LENGTH=607
Length = 607
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 131/321 (40%), Gaps = 43/321 (13%)
Query: 6 NLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADS 65
+L G IF C T ECY +FGLPA + NI G LFLF+ + L+GI+ A S
Sbjct: 129 DLCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAAS 188
Query: 66 TGRLNIEPFAFG------RKFPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPEL 119
G+LNI+ A+ +PAQVK + C PLPE F I++NY F EL
Sbjct: 189 EGKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYN-DDKMFWFEL 247
Query: 120 SSGQVRNLLELFRP--------LHVLSTAPPR-PV----LNEIYSPSTLPLPPMNNVFHQ 166
GQ LL LF+P + + PPR P+ L +I + +N+F
Sbjct: 248 DRGQTNKLLRLFKPSPSVRPPTISRDAVPPPRKPIPASSLAQIGDSGATRIDKWSNLF-- 305
Query: 167 TSRSSFEDSYFSRMSPNQAPRQLNYRHVNELAEPTGWAYPVNKLIPNSAAEHSVISQAPR 226
+SS E + + R VN L + W N N+ + S +
Sbjct: 306 --KSSDESTKNKEKDSKEGALGAGSRLVN-LGKTKEWETASN----NADERRTQPSVSQS 358
Query: 227 NQLHAEAVYAVTPEGTYAARTATSYTLSHPQYTQQGILKPQ------PEFHTQS------ 274
++ A+ +T T + S T +G+ P P H S
Sbjct: 359 GTSYSSALSHMTASSTQEKK--NSITNEGSSQACKGVENPWTSAARVPPIHQDSGGFRNA 416
Query: 275 LHDSQHAHLNVLHPQHDLHPS 295
+ + +N H Q +LHP+
Sbjct: 417 AMEGEDVKVNAYHHQQNLHPT 437
>AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose
oxidase/kelch, beta-propeller (InterPro:IPR011043),
Kelch repeat type 1 (InterPro:IPR006652),
Development/cell death domain (InterPro:IPR013989),
Kelch related (InterPro:IPR013089), Kelch-type beta
propeller (InterPro:IPR015915); BEST Arabidopsis
thaliana protein match is: DCD (Development and Cell
Death) domain protein (TAIR:AT3G11000.1); Has 16133
Blast hits to 7053 proteins in 482 species: Archae - 40;
Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants -
1896; Viruses - 673; Other Eukaryotes - 1230 (source:
NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Length = 656
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 7 LPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRADST 66
L G +F C + T EC ++FGLP+ V I G LFLF+ + L+GI+ A
Sbjct: 18 LGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGC 77
Query: 67 GRLNIEPFAFGRK------FPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNPELS 120
G+LN +P+ + +PAQV ++ C PL E FK AI DNY S+ F EL
Sbjct: 78 GQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYS-SHHFWFELD 136
Query: 121 SGQVRNLLELFRPLHVLSTAPPRPVLN 147
Q R L L V P+P +N
Sbjct: 137 HFQTRKLTCLLTSFAV----KPKPPMN 159
>AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:16815630-16816932 FORWARD LENGTH=349
Length = 349
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 5 ENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRAD 64
E + G+IF+CN T E + ++FGLP +D V I G LFL++ L+GIY A
Sbjct: 214 ETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAA 273
Query: 65 STGRLNIEPFAFGRK-------FPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNP 117
S G NIE AF K FPAQV+ K C PL E+ F+ I+ +Y KF
Sbjct: 274 SFGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFR-PILHHYD--GPKFRL 330
Query: 118 ELSSGQVRNLLELF 131
ELS +V +LL++F
Sbjct: 331 ELSVPEVLSLLDIF 344
>AT3G27090.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:9990020-9991407 FORWARD LENGTH=296
Length = 296
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 5 ENLPGFIFMCNRITKPECYRFRVFGLPAGRKDVVANIRRGTFLFLFDTDVKLLYGIYRAD 64
E L G+IF+CN T E + +FGLP +D V I G LFL++ L+GI+ A
Sbjct: 160 EVLGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAT 219
Query: 65 STGRLNIEPFAFGRK-------FPAQVKFNIYKDCFPLPENHFKHAIIDNYQRGSNKFNP 117
+ G NI+ A+ K FPAQV+ + K C L E+ F+ ++ +Y KF
Sbjct: 220 TFGGTNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDSFR-PVLHHYD--GPKFRL 276
Query: 118 ELSSGQVRNLLEL 130
ELS + +LL+L
Sbjct: 277 ELSVPETLDLLDL 289