Miyakogusa Predicted Gene
- Lj1g3v1357910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1357910.1 tr|F2DAA9|F2DAA9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,33.14,3e-18,RCC1/BLIP-II,Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II;
RCC1,Regulato,CUFF.27160.1
(1347 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS337333 similar to UniRef100_A7PKR9 Cluster: Chromosom... 1300 0.0
gnl|LJGI|AV773721 similar to UniRef100_A7PKR9 Cluster: Chromosom... 656 0.0
gnl|LJGI|TC74653 similar to UniRef100_A7PKR9 Cluster: Chromosome... 547 e-155
gnl|LJGI|TC57653 similar to UniRef100_A7PKR9 Cluster: Chromosome... 389 e-107
gnl|LJGI|TC65884 similar to UniRef100_A8IXS6 Cluster: UVB-resist... 153 3e-36
gnl|LJGI|DC596972 similar to UniRef100_Q9XHD7 Cluster: UVB-resis... 100 4e-20
>gnl|LJGI|FS337333 similar to UniRef100_A7PKR9 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 691
Score = 1300 bits (656), Expect = 0.0
Identities = 656/656 (100%)
Strand = Plus / Plus
Query: 1 atgatggtggacgaccaggctcaggttgaagccaccgctgtgtctccacctcgccgtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 atgatggtggacgaccaggctcaggttgaagccaccgctgtgtctccacctcgccgtgtt 95
Query: 61 cttctcatatccgctggtgctagccactccgtcgctcttctctctggaaatgctgtttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 cttctcatatccgctggtgctagccactccgtcgctcttctctctggaaatgctgtttgc 155
Query: 121 tcgtggggtcgtggagaggatggacagttaggtcatggtgatactgatgataggcttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tcgtggggtcgtggagaggatggacagttaggtcatggtgatactgatgataggcttttg 215
Query: 181 cctactctactcagtgcattggatgctcaacaagtagtttctgttgcttgtggagctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 cctactctactcagtgcattggatgctcaacaagtagtttctgttgcttgtggagctgat 275
Query: 241 catactattgcttattcagattcacgcctggaagtgtatagttggggatggggtgacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 catactattgcttattcagattcacgcctggaagtgtatagttggggatggggtgacttt 335
Query: 301 ggacggttgggtcatggtaattctagtgatttgttcattcctcagcctattagagcatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggacggttgggtcatggtaattctagtgatttgttcattcctcagcctattagagcatta 395
Query: 361 caaggtataaggataaagcaaatttcttgcggtgatagccactgtttagcagttaccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caaggtataaggataaagcaaatttcttgcggtgatagccactgtttagcagttaccatg 455
Query: 421 gaaggcgaggtgcagagttgggggcggaatcaaaatggtcaacttggacttggcaccgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaaggcgaggtgcagagttgggggcggaatcaaaatggtcaacttggacttggcaccgca 515
Query: 481 gatgactcccttgtgccacaaaaaattcaaacatttcagggagtacctatcaaaatggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gatgactcccttgtgccacaaaaaattcaaacatttcagggagtacctatcaaaatggtt 575
Query: 541 gctgccggtgctgaacatagtgtagccattactgaaaatggagaactgtatggatggggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gctgccggtgctgaacatagtgtagccattactgaaaatggagaactgtatggatggggt 635
Query: 601 tggggcagatatggaaacttgggattgggagatcgaaatgatcgctggattcctga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tggggcagatatggaaacttgggattgggagatcgaaatgatcgctggattcctga 691
>gnl|LJGI|AV773721 similar to UniRef100_A7PKR9 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 561
Score = 656 bits (331), Expect = 0.0
Identities = 355/363 (97%)
Strand = Plus / Minus
Query: 974 tgcaagtgaagtttccccacgaccagaaagtagtgcagatctcatgtgggtggagacaca 1033
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgcaagtgaagtttccccacgaccagaaagtagtgcagatctcatttgggtggagacaca 502
Query: 1034 caattgctgttactgaaagagcaaatgtatattcttggggaagaggcacaaatgggcaac 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 caattgctgttactgaaagagcaaatgtatattcttggggaagaggcacaaatgggctac 442
Query: 1094 ttgggcaaggggatactgttgaccggaattctccaaagattattgaggctttgagtgttg 1153
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ttgggcaaggggatactgttgaccggaattctcccaagattattgaggctttgagtgttg 382
Query: 1154 atggatcttgtgggcagcacatagaatcctcaaacactgatcaaatatcaggaaaatcct 1213
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct: 381 atggatcttgtgggcagcacatagaatcctcatactctgatccaatatcaggaaaatcct 322
Query: 1214 tgagctccttgtctgagagatatgcagttgttccagatgaaactgtctcagggcaaactg 1273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tgagctccttgtctgagagatatgcagttgttccagatgaaactgtctcagggccaactg 262
Query: 1274 ctaatccgggcaatggagataggtttgatcttagtgtcccagaaagcgatgtcaaacgga 1333
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatccgggccatggagataggtttgatcttagtgtcccagaaagcgatgtcaaacgga 202
Query: 1334 tcc 1336
|||
Sbjct: 201 tcc 199
>gnl|LJGI|TC74653 similar to UniRef100_A7PKR9 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 554
Score = 547 bits (276), Expect = e-155
Identities = 296/302 (98%), Gaps = 3/302 (0%)
Strand = Plus / Plus
Query: 1049 aaagagcaaatgtatattcttggggaagaggcacaaatgggcaacttgggcaaggggata 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagagcaaatgtatattcttggggaagaggcacaaatgggcaacttgggcaaggggata 60
Query: 1109 ctgttgaccggaattctccaaagattattgaggctttgagtgttgatggatcttgtgggc 1168
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgttgaccggaattctcccaagattattgaggctttgagtgttgatggatcttgtgggc 120
Query: 1169 agcacatagaatcctcaaacactgatcaaatatcaggaaaatccttgagctccttgtctg 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcacatagaatcctcaaacactgatcaaatatcaggaaaatccttgagctccttgtctg 180
Query: 1229 agagatatgcagttgttccagatgaaact---gtctcagggcaaactgctaatccgggca 1285
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 181 agagatatgcagttgttccagatgaaactcaggtctcagggccaactgctaatccgggcc 240
Query: 1286 atggagataggtttgatcttagtgtcccagaaagcgatgtcaaacggatccgagtttgat 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggagataggtttgatcttagtgtcccagaaagcgatgtcaaacggatccgagtttgat 300
Query: 1346 ta 1347
||
Sbjct: 301 ta 302
>gnl|LJGI|TC57653 similar to UniRef100_A7PKR9 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 853
Score = 389 bits (196), Expect = e-107
Identities = 573/700 (81%), Gaps = 9/700 (1%)
Strand = Plus / Plus
Query: 44 ctccacctcgccgtgttcttctcatatccgctggtgctagccactccgtcgctcttctct 103
||||||||||||||||||||||||||||||| || || | |||| | ||||| |||||
Sbjct: 149 ctccacctcgccgtgttcttctcatatccgccggagccaaccacactgtcgcccttctta 208
Query: 104 ctggaaatgctgtttgctcgtggggtcgtggagaggatggacagttaggtcatggtgata 163
|||||| ||||||||| ||||| || |||||||||||||||||||| ||||| ||||
Sbjct: 209 gtggaaactttgtttgctcatgggggcggggagaggatggacagttaggccatggcgata 268
Query: 164 ctgatgataggcttttgcctactctactcagtgcattggatgctcaacaagtagtttctg 223
|||||||| | || || ||||| | | ||||| ||||||| ||| | | || ||||
Sbjct: 269 ctgatgatcgactcttacctacaaaagtgagtgcgttggatggccaagacattgtgtctg 328
Query: 224 ttgcttgtggagctgatcatactattgcttattcagattcacgcctggaagtgtatagtt 283
|| |||||||||||||| ||| | ||| ||| || || || | | ||||| |
Sbjct: 329 ttacttgtggagctgattttaccgtggctcgttctgaatccagcggaggtttatatagct 388
Query: 284 ggggatggggtgactttggacggttgggtcatggtaattctagtgatttgttcattcctc 343
|||||||||||||||||||| |||||||||||||| || || || |||||||||||||
Sbjct: 389 ggggatggggtgactttggaaggttgggtcatggtgataatatcgacttgttcattcctc 448
Query: 344 agcctattagagcattacaaggtataaggataaagcaaatttcttgcggtgatagccact 403
| || |||||||||||||||||| ||| ||||||||||||| |||| || || || || |
Sbjct: 449 atcccattagagcattacaaggtctaacgataaagcaaattgcttgtggagacagtcatt 508
Query: 404 gtttagcagttaccatggaaggcgaggtgcagagttgggggcggaatcaaaatggtcaac 463
|||| |||||||| ||||| | |||||| ||| |||||||| |||||||||||| | |
Sbjct: 509 gtttggcagttactatggataacaaggtgctgagctgggggcgaaatcaaaatggtgagc 568
Query: 464 ttggacttggcaccgcagatgactcccttgtgccacaaaaaattcaaacatttcagggag 523
|||||||||| ||| |||| || || ||||||||||| |||||| ||||||| ||||||
Sbjct: 569 ttggacttggtaccacagacgattctcttgtgccacagaaaattggaacatttgagggag 628
Query: 524 tacctatcaaaatggttgctgccggtgctgaacatagtgtagccattactgaaaatggag 583
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||| | || |
Sbjct: 629 tacctatcaaaatggttgctgctggtgctgaacatagtgcagcaattactgaagacgggg 688
Query: 584 aactgtatggatggggttggggcagatatggaaacttgggattgggagatcgaaatgatc 643
| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 689 atgtgtatggatggggttggggacgatatggaaacttgggattgggagacagaaatgatc 748
Query: 644 gctggattcctgaaaaagtttcttctgttgatttgcagcgtgacaagatgatcatggttg 703
||| ||||||||| ||||| ||| || || ||| |||||| | || ||||
Sbjct: 749 gcttgattcctgagaaagtgtctattgatg---------gtgtcaagatagttatagttg 799
Query: 704 cttgtggctggcggcatactatatctgtttcatcttctgg 743
||||||||||| ||||||| |||||||||||||||||||
Sbjct: 800 cttgtggctggaggcatacagtatctgtttcatcttctgg 839
>gnl|LJGI|TC65884 similar to UniRef100_A8IXS6 Cluster: UVB-resistance 8; n=1; Brassica
rapa|Rep: UVB-resistance 8 - Brassica campestris (Field
mustard), partial (18%)
Length = 695
Score = 153 bits (77), Expect = 3e-36
Identities = 149/173 (86%)
Strand = Plus / Plus
Query: 1015 tcatgtgggtggagacacacaattgctgttactgaaagagcaaatgtatattcttgggga 1074
|||||||||||||||||||| ||||||||| | || | | |||||||||||||||||||
Sbjct: 4 tcatgtgggtggagacacacgattgctgtttcggagcgtggaaatgtatattcttgggga 63
Query: 1075 agaggcacaaatgggcaacttgggcaaggggatactgttgaccggaattctccaaagatt 1134
|||||| ||||||| ||||||||||| || || || | ||||||||| ||||| ||||
Sbjct: 64 agaggcgcaaatggacaacttgggcatggagacaccatagaccggaatgttccaatgatt 123
Query: 1135 attgaggctttgagtgttgatggatcttgtgggcagcacatagaatcctcaaa 1187
||| |||| || ||||||||||||||| |||||||||| |||||||| |||||
Sbjct: 124 attaaggccttcagtgttgatggatctagtgggcagcatatagaatcttcaaa 176
>gnl|LJGI|DC596972 similar to UniRef100_Q9XHD7 Cluster: UVB-resistance protein UVR8;
n=1; Arabidopsis thaliana|Rep: UVB-resistance protein
UVR8 - Arabidopsis thaliana (Mouse-ear cress), partial
(10%)
Length = 366
Score = 99.6 bits (50), Expect = 4e-20
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1015 tcatgtgggtggagacacacaattgctgttactgaaagagcaaatgtatattcttgggga 1074
|||||||||||||||||||| ||||||||| | || | | |||||||||||||||||||
Sbjct: 4 tcatgtgggtggagacacacgattgctgtttcggagcgtggaaatgtatattcttgggga 63
Query: 1075 agaggcacaaatgggcaacttgggca 1100
|||||| ||||||| |||||||||||
Sbjct: 64 agaggcgcaaatggacaacttgggca 89
Score = 69.9 bits (35), Expect = 4e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1125 tccaaagattattgaggctttgagtgttgatggatcttgtgggcagcacatagaatcctc 1184
||||| ||||||| |||| || ||||||||||||||| |||||||||| |||||||| ||
Sbjct: 228 tccaatgattattaaggccttcagtgttgatggatctagtgggcagcatatagaatcttc 287
Query: 1185 aaa 1187
|||
Sbjct: 288 aaa 290