Miyakogusa Predicted Gene

Lj1g3v1222710.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1222710.1 tr|I1JY66|I1JY66_SOYBN Ribonucleoside-diphosphate
reductase OS=Glycine max PE=3 SV=1,89.6,0,PFL-like glycyl radical
enzymes,NULL; R1 subunit of ribonucleotide reductase, N-terminal
domain,Ribo,CUFF.27032.1
         (808 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g092510.1 | ribonucleoside-diphosphate reductase, alpha ch...  1476   0.0  
Medtr3g009480.1 | ribonucleoside-diphosphate reductase, alpha ch...  1406   0.0  
Medtr8g092500.1 | ribonucleoside-diphosphate reductase | LC | ch...    83   1e-15

>Medtr8g092510.1 | ribonucleoside-diphosphate reductase, alpha chain
           | HC | chr8:38675015-38670236 | 20130731
          Length = 812

 Score = 1476 bits (3822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/812 (85%), Positives = 748/812 (92%), Gaps = 4/812 (0%)

Query: 1   MYVIKRDGRQEPVHFDAITARIKKLSLGLNTEHCDPVLVSQKVCAGIYKGVXXXXXXXXX 60
           MYV+KRDGRQE VHFD ITAR+KKLS GL+TEHCDPVLV+QKVCAG+YKGV         
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 61  XXXXXXXXXNHPDYASLAAKIAVSNLHKNTRESFSETVKIMYDHFNEESGMKAPLIADDI 120
                    NHPDYASLAA+IAVSNLHKNT +SFSETVK+MY+HFN  SG KAPLIADD+
Sbjct: 61  AETAAGMTANHPDYASLAARIAVSNLHKNTLKSFSETVKVMYNHFNHRSGKKAPLIADDV 120

Query: 121 YEIIIKNAARLDSEIIYGRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
           YEIIIKNAARLDSEIIY RDFDYDYFGFKTLERSYLLKVQG VVERPQHM+MRV+VGIHK
Sbjct: 121 YEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGVVVERPQHMIMRVSVGIHK 180

Query: 181 DDIESAVKTYHLLSERWFTHASPTLFNAGTPRPQLSSCFLVCMQDDSIEGIYETLKECAV 240
           DD+ESAVKTYH +S+RWFTHASPTLFNAGTPRPQLSSCFLVCM++DSIEGIY+TLKECAV
Sbjct: 181 DDVESAVKTYHFMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAV 240

Query: 241 ISKSAGGIGVSVHNIRATGSYIGGTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAVY 300
           ISKSAGGIGVSVHNIRA GSYI GTNGTSNGIVPMLRVFN+TARYVDQGGGKRKGAFAVY
Sbjct: 241 ISKSAGGIGVSVHNIRAHGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300

Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQKNGEWSLFCPREAPGLA 360
           LEPWHADIFEFL+L+ NHGKEE RARDLFYALWVPDLFMERVQ NGEWSLFCP EAPGLA
Sbjct: 301 LEPWHADIFEFLELKINHGKEEQRARDLFYALWVPDLFMERVQSNGEWSLFCPNEAPGLA 360

Query: 361 DCWGEEFEKLYHRYEKEGKAKKVVQAQNLWFEILKAQIETGNPYMLFKDACNRKSNQQNL 420
           DCWGEE++KLY +YEK GKAKK+VQAQ+LWF ILK+QIETGNPYMLFKDACNRKSNQQNL
Sbjct: 361 DCWGEEYDKLYTQYEKAGKAKKIVQAQSLWFAILKSQIETGNPYMLFKDACNRKSNQQNL 420

Query: 421 GTIKSSNLCTEIIQYSSPTETAVCNLASIALPQYVREKGVPVESHSSKLIGSTGSGNRYF 480
           GTIKSSNLCTEII+Y+SPTETAVCNLASIALP+YVR+KG+PVESH SKL+GS GS +RYF
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGLPVESHQSKLVGSRGSSSRYF 480

Query: 481 DFDKLAEITAVVTTNLNNIIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFMLLGLAFDS 540
           DF+KL E+TAVVTTNLN IIDVNYYPVE A+RSNLRHRPIGIGVQGLADTF+LLG+AFDS
Sbjct: 481 DFEKLGEVTAVVTTNLNKIIDVNYYPVETAERSNLRHRPIGIGVQGLADTFILLGMAFDS 540

Query: 541 PEAQQLNKEIFETIYYHALKTSSDLAVKEGPYETYSGSPLSKGILQPDMWGVTPSNRWDW 600
           PEAQQLNK+IFETIYYHALKTS +LA KEGPYETYSGSP+SKGILQPDMWGVTPSN WDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKTSCELAAKEGPYETYSGSPVSKGILQPDMWGVTPSNLWDW 600

Query: 601 DALRETISKKGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
            ALRE ISK GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEFVVVNKHL
Sbjct: 601 GALREMISKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKHL 660

Query: 661 LHDLTEMGLWSPTIKNQIIYENGSVQNISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           LHDLTEMGLW+P +KN+IIY+NGSVQN+SEIP ELK IYKTVWEIKQK LVDMA DRGCY
Sbjct: 661 LHDLTEMGLWNPALKNKIIYDNGSVQNLSEIPAELKVIYKTVWEIKQKILVDMAVDRGCY 720

Query: 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTSALKEKP 780
           IDQSQSLNIHMD+PNFGKLTSLHFYAWSKGLKTGMYYLRTRAA+DAIKFTVDTSA+K++P
Sbjct: 721 IDQSQSLNIHMDKPNFGKLTSLHFYAWSKGLKTGMYYLRTRAASDAIKFTVDTSAIKDQP 780

Query: 781 NT----ECDVDTKMAQVVCSLTNPEECLACGS 808
                 + D DTKMAQ+VCSLTN +EC ACGS
Sbjct: 781 KVKEADDEDDDTKMAQMVCSLTNRDECEACGS 812


>Medtr3g009480.1 | ribonucleoside-diphosphate reductase, alpha chain
           | HC | chr3:2062216-2059106 | 20130731
          Length = 804

 Score = 1406 bits (3639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/815 (81%), Positives = 726/815 (89%), Gaps = 18/815 (2%)

Query: 1   MYVIKRDGRQEPVHFDAITARIKKLSLGLNTEHCDPVLVSQKVCAGIYKGVXXXXXXXXX 60
           MYV++RDGRQE V FD ITAR++KLS GL+TEHCDPVLV+QKVCAG+YKGV         
Sbjct: 1   MYVVERDGRQEAVRFDKITARLQKLSYGLSTEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60

Query: 61  XXXXXXXXXNHPDYASLAAKIAVSNLHKNTRESFSETVKIMYDHFNEESGMKAPLIADDI 120
                    NHPDYASLA +IAVSNLHKNT ESFSETVK             APLIADD+
Sbjct: 61  AETAAGMTANHPDYASLAGRIAVSNLHKNTLESFSETVK-----------KAAPLIADDV 109

Query: 121 YEIIIKNAARLDSEIIYGRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
           Y II+KNAARLDSEIIY RDFDYDYFGFKTLERSYLLKV+G VVERPQHM+MRV+VGIHK
Sbjct: 110 YAIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVEGVVVERPQHMIMRVSVGIHK 169

Query: 181 DDIESAVKTYHLLSERWFTHASPTLFNAGTPRPQLSSCFLVCMQDDSIEGIYETLKECAV 240
           DD+ESAVKTYH +S+RWFTHASPTLFNAGTPRPQLSSCFLVCM++DSIEGIY+TLKECAV
Sbjct: 170 DDVESAVKTYHFMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAV 229

Query: 241 ISKSAGGIGVSVHNIRATGSYIGGTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAVY 300
           ISKSAGGIGVSVHNIRA GSYI GTNGTSNGIVPMLRVFN+TARYVDQGGGKRKGAFAVY
Sbjct: 230 ISKSAGGIGVSVHNIRAQGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 289

Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQKNGEWSLFCPREAPGLA 360
           LEPWHADIF+FL+L+ NHGKEE RARDLFYALWVPDLFMER   +GEWSLFCP EAPGLA
Sbjct: 290 LEPWHADIFDFLELKINHGKEEQRARDLFYALWVPDLFMERALSDGEWSLFCPNEAPGLA 349

Query: 361 DCWGEEFEKLYHRYEKEGKAKKVVQAQNLWFEILKAQIETGNPYMLFKDACNRKSNQQNL 420
           DCWGEEF+KLY +YEK GKAKK+VQA+ LWF ILK+QIETGNPYMLFKD CNRKSNQQNL
Sbjct: 350 DCWGEEFDKLYTQYEKAGKAKKIVQARTLWFAILKSQIETGNPYMLFKDTCNRKSNQQNL 409

Query: 421 GTIKSSNLCTEIIQYSSPTETAVCNLASIALPQYVREKGVPVESHSSKLIGSTGSGNRYF 480
           GTIKSSNLCTEIIQY+SPTETAVCNLASIALP++VR+KG+PVESH SKL+GS GS +RYF
Sbjct: 410 GTIKSSNLCTEIIQYTSPTETAVCNLASIALPRFVRDKGLPVESHQSKLVGSRGSSSRYF 469

Query: 481 DFDKLAEITAVVTTNLNNIIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFMLLGLAFDS 540
           DF+KL E+TAVVTTNLN IIDVN YPVE A+RSNLRHRPIGIGVQGLADTF+LLG+AFDS
Sbjct: 470 DFEKLGEVTAVVTTNLNKIIDVNNYPVETAERSNLRHRPIGIGVQGLADTFILLGMAFDS 529

Query: 541 PEAQQLNKEIFETIYYHALKTSSDLAVKEGPYETYSGSPLSKGILQPDMWGVTPSNRWDW 600
           PEAQQLNK+IFETIYYHALKTS +LA KEGPYETYSGSP+SKGILQPDMWGVTPSN WDW
Sbjct: 530 PEAQQLNKDIFETIYYHALKTSCELAAKEGPYETYSGSPVSKGILQPDMWGVTPSNLWDW 589

Query: 601 DALRETISKKGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
            ALRE ISK GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RR LSGEFVVVNKHL
Sbjct: 590 GALREMISKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRTLSGEFVVVNKHL 649

Query: 661 LHDLTEMGLWSPTIKNQIIYENGSVQNISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           LHDLTEMGLW+P +KN+I+Y+NGSVQN+SEIP ELK IYKTVWEIKQK LV+MA DRGCY
Sbjct: 650 LHDLTEMGLWNPALKNKILYDNGSVQNLSEIPAELKGIYKTVWEIKQKILVNMAVDRGCY 709

Query: 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTSALKEKP 780
           IDQSQSLNIHMDQP +G LTSLHF+AWSKGLKTGMYYLRTRAA+DAIKFTVDTSA+K++P
Sbjct: 710 IDQSQSLNIHMDQPTYGMLTSLHFHAWSKGLKTGMYYLRTRAASDAIKFTVDTSAIKDQP 769

Query: 781 NTE-------CDVDTKMAQVVCSLTNPEECLACGS 808
             +        D D KMAQ+VCSLTN +EC +CGS
Sbjct: 770 KVKEADDAEDEDDDAKMAQMVCSLTNRDECTSCGS 804


>Medtr8g092500.1 | ribonucleoside-diphosphate reductase | LC |
           chr8:38670074-38669019 | 20130731
          Length = 137

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 46/56 (82%)

Query: 214 QLSSCFLVCMQDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIGGTNGTS 269
           +LSSCFLVCM++DS EGIY+TLK+CAVISKSAGGIGVSVHNI +    I  T  TS
Sbjct: 69  KLSSCFLVCMKEDSTEGIYDTLKQCAVISKSAGGIGVSVHNIYSANDAIKFTVDTS 124



 Score = 74.3 bits (181), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 40/59 (67%)

Query: 42  KVCAGIYKGVXXXXXXXXXXXXXXXXXXNHPDYASLAAKIAVSNLHKNTRESFSETVKI 100
           KVCAGIYKGV                  NHPDYASLAA+IAVSNLHKNT +SF+ETVK+
Sbjct: 12  KVCAGIYKGVATSQLDELAAETTVGKTANHPDYASLAARIAVSNLHKNTLKSFAETVKL 70