Miyakogusa Predicted Gene

Lj1g3v0885530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0885530.1 Non Characterized Hit- tr|I1IN92|I1IN92_BRADI
Uncharacterized protein (Fragment) OS=Brachypodium
dis,59.68,0.00000000000006,seg,NULL,CUFF.26585.1
         (328 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088605.1 | plastid transcriptionally active protein | HC ...   468   e-132

>Medtr3g088605.1 | plastid transcriptionally active protein | HC |
           chr3:40320205-40323997 | 20130731
          Length = 320

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/276 (83%), Positives = 244/276 (88%), Gaps = 5/276 (1%)

Query: 53  RNPFLTRVDDGDADIETAGPXXXXXXXXXXXXXXNKRDFDIEYEPSGSGADLDIAVAESK 112
           RNPFLTR DDGD  +E+AGP              N++DFDIEYE +G   D+DIA A+S 
Sbjct: 50  RNPFLTRADDGD--VESAGPDDYEMDEDEMEEVDNEKDFDIEYEANG---DVDIATAQSM 104

Query: 113 SFVSTQGWDPETVVDYRINEDEFHKFSLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDV 172
           +FVSTQGWDP+T+VDYRINEDEFHK SLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDV
Sbjct: 105 NFVSTQGWDPDTLVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDV 164

Query: 173 YSIPKVLAPMPQKYIRCAQSDFGCDNVTEPPVDALRDPLYKSEREIYKIFLTKHYKNRRL 232
           YSIPKVLAPMPQKYIRCAQSDFGCDNVTEPPVDA RDPLYKSEREI K FLTKHYKNRRL
Sbjct: 165 YSIPKVLAPMPQKYIRCAQSDFGCDNVTEPPVDARRDPLYKSEREIEKAFLTKHYKNRRL 224

Query: 233 GDPEFVLDFEEIYVIDSKTKSITRAKVLVTVPGGRTRDRKSDLLVIADKGRSFKIIHASE 292
           GDPEFVLDFEEIYVIDSKTKSITRAKVLVT PGGRTRDRKSDLLVIADKG SFKIIH SE
Sbjct: 225 GDPEFVLDFEEIYVIDSKTKSITRAKVLVTAPGGRTRDRKSDLLVIADKGNSFKIIHMSE 284

Query: 293 RDDPTTVIERKEWIETREEMERHLRKLRDFSISNWF 328
           +DDPTTVIER+EW ++REEMERHLRKLRDFS SNWF
Sbjct: 285 KDDPTTVIERREWAQSREEMERHLRKLRDFSTSNWF 320