Miyakogusa Predicted Gene

Lj1g3v0049850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0049850.1 CUFF.25160.1
         (850 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44750.1 | Symbols: REV1, ATREV1 | DNA-directed DNA polymeras...   847   0.0  
AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymeras...   843   0.0  
AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily protei...   129   6e-30
AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:1...   117   4e-26
AT5G44740.1 | Symbols: POLH | Y-family DNA polymerase H | chr5:1...    75   3e-13

>AT5G44750.1 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases
           | chr5:18052669-18059581 FORWARD LENGTH=1101
          Length = 1101

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/815 (54%), Positives = 557/815 (68%), Gaps = 46/815 (5%)

Query: 45  LGVAWGS-------NALPPSDFSGYMALKNRKLHDQFHAQXXXXXXXXXXG-KPIFTGVS 96
           LG AWG+        + P SDF  YM +KNRKL +QF  +            K IF GVS
Sbjct: 33  LGAAWGAASSRSSFRSSPFSDFGSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVS 92

Query: 97  IFVDGFPVPSSQELRGYMFKYGGRFENYFSRHRVTHIICSNLPHTKLKNLRAFSAGLPLV 156
           IFVDGF +PS QEL+GYM KYGGRFENYFSR  VTHIICSNLP +K+KNLR FS GLP+V
Sbjct: 93  IFVDGFTIPSHQELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVV 152

Query: 157 KPTWILDSVAANRLLPWLPYQLHQLANNQPTLSAFFSFKTSKLSDMEDSTT----NVCQS 212
           KPTWI+DS++ANRLL W+PYQL QL + QP LSAFF+ ++     M    T    +   S
Sbjct: 153 KPTWIVDSISANRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYS 212

Query: 213 QDRHSSKVNGLISTVSNDTIPENENTNAFMLEDSTNLVRVKYDEGSTAATQ--------- 263
           +    S +    S  + D I  ++  +   +E++T  +  +   G   +++         
Sbjct: 213 EAEEGSSIRADDSEEARDHI--DDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNY 270

Query: 264 --EKTNVQDELEPNHQEPSTSVSSPCSDDQNVKEFQSSAATRL--SKQGHSTLTDPNFVE 319
             E+  V  EL+      STS +   S   N K    S AT    S + HSTL DPNFVE
Sbjct: 271 DIEEKEVSSELQSTTNLHSTSDNK--SVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVE 328

Query: 320 NYFKSSRLHFIGTWRNRYRKRFPMPSAGLN-KEXXXXXXXXXXXXXXXHVDMDCFFVSVV 378
           NYFK+SRLHFIGTWRNRYRKRF   S GL   +               H+D+DCFFVSVV
Sbjct: 329 NYFKNSRLHFIGTWRNRYRKRFHGSSNGLKWADSGQNTAEMAKKSTIIHIDLDCFFVSVV 388

Query: 379 IRSQPELFDKPVAVCHSNNSKGTSEISSANYPARSYGIKAGMFVRDAKALCPDLVIFPYN 438
           I+++ EL DKPVAVCHS+N KGT+EISSANYPAR+YG+KAGMFVR AK LCP LVI PYN
Sbjct: 389 IKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAKDLCPQLVIVPYN 448

Query: 439 FEAYEEVADQFYTILHRHCNKVQAVSCDEAFLDVTHSEVKDPELLASSIREEICKTTRCT 498
           FEAYEEVADQFY ILHRHC KVQA+SCDEAFLDV+     + E+LAS+IR EI +TT C+
Sbjct: 449 FEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVETEVLASTIRNEILETTGCS 508

Query: 499 ASAGIAGNMLMARIATRTAKPNGQYHITPERVDDYLCQLPIDSLPGVGHVLQEKLKKQNV 558
           ASAGI G MLMAR+ATR AKP GQ +I+ E+V+++L QLP+ +LPGVG VL+EKL KQN+
Sbjct: 509 ASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNI 568

Query: 559 HTCGQLRTISKALLQKDYGMKTGEMLWNYSRGIDSRAVGVFQESKSIGADVNWGVRFNDV 618
            TCGQLR ISK  LQKD+G+KTGEMLW+YSRG+D R+V   QESKSIGA+VNWGVRF D 
Sbjct: 569 QTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQ 628

Query: 619 KDCDRFLIDLCKEVSLRLQCCGVQGRTFSLKIKKRRKDAVEPAKFMGCGDCENLSHSITI 678
           +D   FL  LCKEVSLRLQ C + GRTF+LKIKKR+KDA EP K+MGCGDC+NLS SIT+
Sbjct: 629 QDVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDAEEPTKYMGCGDCDNLSRSITV 688

Query: 679 PLATDNVEVLQRIVKQLFGCFYIDVKEIRGIGLQVSRFESAETSKQEKYSLKSWVASGNA 738
           P ATD++EVLQRI K+LFG F +DVKE+RG+GLQVS+ +SA+ S +   +LKSW++S  A
Sbjct: 689 PAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKLDSADPSNKGSRTLKSWLSSAPA 748

Query: 739 SMQKQKYPMDQD--------KQNMD---GTSSGECRGGSSVKIQNNQANANPISTPPPLC 787
            +Q     ++QD        ++N D     + G  R   S   +++  + +  S+ PP+C
Sbjct: 749 VVQ-----IEQDDNVFAAKVRENSDCNRPVTGGVSRLRESNSEESSIQSGDTNSSLPPMC 803

Query: 788 HLDVEVIRNLPPEVFSELNEIYGGKLIDYIAKGKG 822
           +LD+EV+ NLPPE+ SEL+  YGGKL + I K +G
Sbjct: 804 YLDMEVLENLPPELLSELDGTYGGKLFELIEKKRG 838


>AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases
           | chr5:18052669-18059581 FORWARD LENGTH=1105
          Length = 1105

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/819 (54%), Positives = 557/819 (68%), Gaps = 50/819 (6%)

Query: 45  LGVAWGS-------NALPPSDFSGYMALKNRKLHDQFHAQXXXXXXXXXXG-KPIFTGVS 96
           LG AWG+        + P SDF  YM +KNRKL +QF  +            K IF GVS
Sbjct: 33  LGAAWGAASSRSSFRSSPFSDFGSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVS 92

Query: 97  IFVDGFPVPSSQELRGYMFKYGGRFENYFSRHRVTHIICSNLPHTKLKNLRAFSAGLPLV 156
           IFVDGF +PS QEL+GYM KYGGRFENYFSR  VTHIICSNLP +K+KNLR FS GLP+V
Sbjct: 93  IFVDGFTIPSHQELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVV 152

Query: 157 KPTWILDSVAANRLLPWLPYQLHQLANNQPTLSAFFSFKTSKLSDMEDSTT----NVCQS 212
           KPTWI+DS++ANRLL W+PYQL QL + QP LSAFF+ ++     M    T    +   S
Sbjct: 153 KPTWIVDSISANRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYS 212

Query: 213 QDRHSSKVNGLISTVSNDTIPENENTNAFMLEDSTNLVRVKYDEGSTAATQ--------- 263
           +    S +    S  + D I  ++  +   +E++T  +  +   G   +++         
Sbjct: 213 EAEEGSSIRADDSEEARDHI--DDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNY 270

Query: 264 --EKTNVQDELEPNHQEPSTSVSSPCSDDQNVKEFQSSAATRL--SKQGHSTLTDPNFVE 319
             E+  V  EL+      STS +   S   N K    S AT    S + HSTL DPNFVE
Sbjct: 271 DIEEKEVSSELQSTTNLHSTSDNK--SVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVE 328

Query: 320 NYFKSSRLHFIGTWRNRYRKRFPMPSAGLN-KEXXXXXXXXXXXXXXXHVDMDCFFVSVV 378
           NYFK+SRLHFIGTWRNRYRKRF   S GL   +               H+D+DCFFVSVV
Sbjct: 329 NYFKNSRLHFIGTWRNRYRKRFHGSSNGLKWADSGQNTAEMAKKSTIIHIDLDCFFVSVV 388

Query: 379 IRSQPELFDKPVAVCHSNNSKGTSEISSANYPARSYGIKAGMFVRDAKALCPDLVIFPYN 438
           I+++ EL DKPVAVCHS+N KGT+EISSANYPAR+YG+KAGMFVR AK LCP LVI PYN
Sbjct: 389 IKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAKDLCPQLVIVPYN 448

Query: 439 FEAYEEVADQFYTILHRHCNKVQAVSCDEAFLDVTHSEVKDPELLASSIREEICKTTRCT 498
           FEAYEEVADQFY ILHRHC KVQA+SCDEAFLDV+     + E+LAS+IR EI +TT C+
Sbjct: 449 FEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVETEVLASTIRNEILETTGCS 508

Query: 499 ASAGIAGNMLMARIATRTAKPNGQYHITPERVDDYLCQLPIDSLPGVGHVLQEKLKKQNV 558
           ASAGI G MLMAR+ATR AKP GQ +I+ E+V+++L QLP+ +LPGVG VL+EKL KQN+
Sbjct: 509 ASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNI 568

Query: 559 HTCGQLRTISKALLQKDYGMKTGEMLWNYSRGIDSRAVGVFQESKSIGADVNWGVRFNDV 618
            TCGQLR ISK  LQKD+G+KTGEMLW+YSRG+D R+V   QESKSIGA+VNWGVRF D 
Sbjct: 569 QTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQ 628

Query: 619 KD----CDRFLIDLCKEVSLRLQCCGVQGRTFSLKIKKRRKDAVEPAKFMGCGDCENLSH 674
           +D       FL  LCKEVSLRLQ C + GRTF+LKIKKR+KDA EP K+MGCGDC+NLS 
Sbjct: 629 QDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDAEEPTKYMGCGDCDNLSR 688

Query: 675 SITIPLATDNVEVLQRIVKQLFGCFYIDVKEIRGIGLQVSRFESAETSKQEKYSLKSWVA 734
           SIT+P ATD++EVLQRI K+LFG F +DVKE+RG+GLQVS+ +SA+ S +   +LKSW++
Sbjct: 689 SITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKLDSADPSNKGSRTLKSWLS 748

Query: 735 SGNASMQKQKYPMDQD--------KQNMD---GTSSGECRGGSSVKIQNNQANANPISTP 783
           S  A +Q     ++QD        ++N D     + G  R   S   +++  + +  S+ 
Sbjct: 749 SAPAVVQ-----IEQDDNVFAAKVRENSDCNRPVTGGVSRLRESNSEESSIQSGDTNSSL 803

Query: 784 PPLCHLDVEVIRNLPPEVFSELNEIYGGKLIDYIAKGKG 822
           PP+C+LD+EV+ NLPPE+ SEL+  YGGKL + I K +G
Sbjct: 804 PPMCYLDMEVLENLPPELLSELDGTYGGKLFELIEKKRG 842


>AT1G49980.1 | Symbols:  | DNA/RNA polymerases superfamily protein |
           chr1:18508026-18512111 FORWARD LENGTH=671
          Length = 671

 Score =  129 bits (325), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 190/418 (45%), Gaps = 47/418 (11%)

Query: 367 HVDMDCFFVSVVIRSQPELFDKPVAVCHSNNSKGTSEISSANYPARSYGIKAGMFVRDAK 426
           HVDMD F+ +V   S P +  KP+AV       G S IS+ANY AR +G++A M    A+
Sbjct: 107 HVDMDAFYAAVETLSDPSIKGKPMAV------GGLSMISTANYEARKFGVRAAMPGFIAR 160

Query: 427 ALCPDLVIFPYNFEAYEEVADQFYTILHRHCNKVQAVSCDEAFLDVTHSEVKDPEL---- 482
            LCPDL+  P +F  Y   +D    +   +     A S DEA+LD+T    ++  L    
Sbjct: 161 KLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEV-CRERGLSGGE 219

Query: 483 LASSIREEICKTTRCTASAGIAGNMLMARIATRTAKPNGQYHITPER--VDDYLCQLPID 540
           +A  +R  +   T  T SAG+A N L+A++ +   KPNGQ+ +  +R  V  ++  LP+ 
Sbjct: 220 IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVR 279

Query: 541 SLPGVGHVLQEKLKKQ-NVHTCGQLRTISKALLQKDYGMKTGEMLWNYSRGIDSRAVGVF 599
            + G+G V +  LK    + TC ++     +LL   +   + +   +   G+        
Sbjct: 280 KIGGIGKVTEHILKDALGIKTCEEM-VQKGSLLYALFSQSSADFFLSVGLGLGGTNTPQV 338

Query: 600 QESKSIGADVNWGVRFNDVKDCDRFLIDLCKEVSLRLQCCGVQGRTFSLKIK----KRRK 655
           +  KSI ++  +     D +     L +L + +S  ++  G+  RT +LK+K    + R 
Sbjct: 339 RSRKSISSERTFAAT-GDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLKTASFEIRS 397

Query: 656 DAVEPAKFMGCGDCENLSHSITIPLATDNVEVLQRIVKQLFGCFYIDVKEIRGIGLQVSR 715
            AV   ++  C   + L H+  +  A   V V                   R IGL++S+
Sbjct: 398 RAVSLQRYT-CSSDDILKHATKLLKAELPVSV-------------------RLIGLRMSQ 437

Query: 716 F-ESAETSKQEKYSLKSWVASGNASMQKQ------KYPMDQDKQNMDGTSSGECRGGS 766
           F E    S   + ++  ++   ++S Q Q       + +D +K  +    SG    GS
Sbjct: 438 FVEEIRNSDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGS 495


>AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H |
           chr5:18047903-18051779 REVERSE LENGTH=672
          Length = 672

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 141/334 (42%), Gaps = 66/334 (19%)

Query: 367 HVDMDCFFVSVVIRSQPELFDKPVAVCHSNNSKGTSEISSANYPARSYGIKAGMFVRDAK 426
           HVDMDCF+V V  R QPEL   P AV   N  +G   I+  +Y AR  G+K  M   +AK
Sbjct: 16  HVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIA-VSYEARKCGVKRSMRGDEAK 74

Query: 427 ALCPD--LVIFPY-----NFEAYEEVADQFYTILHRHCNKVQAVSCDEAFLDVTHS---- 475
           A CP   LV  P      +   Y     +  +IL +   K +  S DE +LD+T +    
Sbjct: 75  AACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTDAAESM 133

Query: 476 ---------EVKDPELLASSI--------------------------------------- 487
                    E+ D E+L S I                                       
Sbjct: 134 LADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDKLLSCGIIIVA 193

Query: 488 --REEICKTTRCTASAGIAGNMLMARIATRTAKPNGQYHITPERVDDYLCQLPIDSLPGV 545
             R+++ K T  T SAGIA N ++A++A+   KP  Q  +    V + L  LPI  +  +
Sbjct: 194 ELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQL 253

Query: 546 GHVLQEKLKKQ-NVHTCGQLRTISKALLQKDYGMKTGEMLWNYSRGIDSRAVGVFQESKS 604
           G  L   L+    V T G L   S+  LQ+ YG+ TG  LWN +RGI    V      KS
Sbjct: 254 GGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKS 313

Query: 605 IGADVNW-GVR-FNDVKDCDRFLIDLCKEVSLRL 636
            G+   + G R    +     +L  L +E+S RL
Sbjct: 314 HGSGKTFPGPRALKSLSTVQHWLNQLSEELSERL 347


>AT5G44740.1 | Symbols: POLH | Y-family DNA polymerase H |
           chr5:18047903-18051197 REVERSE LENGTH=588
          Length = 588

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 14/245 (5%)

Query: 482 LLASSIREEICKTTRCTASAGIAGNMLMARIATRTAKPNGQYHITPERVDDYLCQLPIDS 541
           ++ + +R+++ K T  T SAGIA N ++A++A+   KP  Q  +    V + L  LPI  
Sbjct: 106 IIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKK 165

Query: 542 LPGVGHVLQEKLKKQ-NVHTCGQLRTISKALLQKDYGMKTGEMLWNYSRGIDSRAVGVFQ 600
           +  +G  L   L+    V T G L   S+  LQ+ YG+ TG  LWN +RGI    V    
Sbjct: 166 MKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRL 225

Query: 601 ESKSIGADVNW-GVR-FNDVKDCDRFLIDLCKEVSLRLQCCGVQGR----TFSLKIKKRR 654
             KS G+   + G R    +     +L  L +E+S RL     Q +    T +L     R
Sbjct: 226 LPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFR 285

Query: 655 KDAVEPAKFMGCGDCENLSHSITIPLATDNVEVLQRIVKQLFGCFYI-----DVKEIRGI 709
               +  K      C  + + +T  +  D   + Q  +++  G F I      ++  R  
Sbjct: 286 SKDSDSHKKFPSKSCP-MRYGVT-KIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRIT 343

Query: 710 GLQVS 714
           GL VS
Sbjct: 344 GLSVS 348